Wall clock time and date at job start Wed Apr 1 2020 02:02:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 C 1.38243 * 119.99881 * 2 1 4 4 C 1.38235 * 119.99773 * 180.29368 * 3 2 1 5 5 C 1.38242 * 120.00082 * 359.70253 * 4 3 2 6 6 C 1.38234 * 120.00113 * 0.02572 * 5 4 3 7 7 C 1.50694 * 120.00356 * 179.97438 * 6 5 4 8 8 C 1.38234 * 120.00265 * 179.74214 * 2 1 3 9 9 C 1.50699 * 119.99925 * 0.02562 * 8 2 1 10 10 C 1.50697 * 109.46964 * 269.72453 * 9 8 2 11 11 O 1.21287 * 120.00332 * 359.97438 * 10 9 8 12 12 N 1.34775 * 120.00497 * 179.97438 * 10 9 8 13 13 C 1.49631 * 126.06541 * 359.97438 * 12 10 9 14 14 C 1.51525 * 102.49198 * 154.35349 * 13 12 10 15 15 H 1.09004 * 111.13024 * 287.40916 * 14 13 12 16 16 C 1.51564 * 123.33440 * 151.62928 * 14 13 12 17 17 C 1.56346 * 101.81414 * 207.98598 * 16 14 13 18 18 C 1.56004 * 105.76705 * 25.43829 * 17 16 14 19 19 H 1.09003 * 110.52119 * 125.72278 * 18 17 16 20 20 N 1.46498 * 110.52314 * 248.33336 * 18 17 16 21 21 C 1.36943 * 119.99752 * 273.26946 * 20 18 17 22 22 H 1.08002 * 119.99793 * 0.27665 * 21 20 18 23 23 C 1.38811 * 120.00012 * 180.27737 * 21 20 18 24 24 N 1.31624 * 119.99698 * 0.02562 * 23 21 20 25 25 Si 1.86795 * 120.00072 * 180.02562 * 23 21 20 26 26 H 1.48495 * 109.47159 * 0.02562 * 25 23 21 27 27 H 1.48505 * 109.47290 * 120.00044 * 25 23 21 28 28 H 1.48503 * 109.47163 * 240.00049 * 25 23 21 29 29 C 1.49701 * 103.98825 * 6.96078 * 18 17 16 30 30 H 1.08995 * 108.54862 * 77.96472 * 29 18 17 31 31 C 1.49292 * 126.07773 * 179.97438 * 12 10 9 32 32 H 1.08999 * 109.47216 * 270.25718 * 1 2 3 33 33 H 1.08999 * 109.47415 * 30.25837 * 1 2 3 34 34 H 1.08997 * 109.47338 * 150.25734 * 1 2 3 35 35 H 1.07991 * 120.00290 * 0.02562 * 3 2 1 36 36 H 1.07994 * 120.00440 * 179.72366 * 4 3 2 37 37 H 1.07993 * 119.99935 * 179.97438 * 5 4 3 38 38 H 1.09005 * 109.46741 * 270.02161 * 7 6 5 39 39 H 1.09000 * 109.47158 * 30.01532 * 7 6 5 40 40 H 1.09000 * 109.47816 * 150.01737 * 7 6 5 41 41 H 1.08995 * 109.47144 * 149.72251 * 9 8 2 42 42 H 1.09003 * 109.46949 * 29.72209 * 9 8 2 43 43 H 1.08993 * 110.80552 * 36.10404 * 13 12 10 44 44 H 1.08995 * 110.80058 * 272.60035 * 13 12 10 45 45 H 1.08998 * 110.95814 * 89.85956 * 16 14 13 46 46 H 1.08994 * 110.96319 * 326.11499 * 16 14 13 47 47 H 1.09003 * 110.18947 * 266.36168 * 17 16 14 48 48 H 1.09001 * 110.25386 * 144.54970 * 17 16 14 49 49 H 0.97001 * 120.00384 * 93.55302 * 20 18 17 50 50 H 0.96999 * 119.99739 * 180.02562 * 24 23 21 51 51 H 1.08994 * 110.39168 * 292.40975 * 31 12 10 52 52 H 1.08998 * 110.39472 * 54.69456 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0061 5 6 4.2717 0.0000 -0.0061 6 6 3.5806 -1.1971 -0.0004 7 6 4.3340 -2.5022 -0.0009 8 6 2.1982 -1.1971 0.0054 9 6 1.4447 -2.5022 0.0107 10 6 1.1990 -2.9345 1.4332 11 8 1.5969 -2.2505 2.3524 12 7 0.5370 -4.0813 1.6843 13 6 -0.0115 -5.0242 0.6601 14 6 -0.0316 -6.3430 1.4060 15 1 0.9767 -6.7357 1.5373 16 6 -1.0161 -7.4553 1.1048 17 6 -1.1274 -8.1685 2.4917 18 6 -0.7667 -7.0858 3.5553 19 1 -1.5594 -7.0015 4.2987 20 7 0.5092 -7.4047 4.2006 21 6 0.5367 -8.2314 5.2920 22 1 -0.3818 -8.6518 5.6742 23 6 1.7450 -8.5290 5.9070 24 7 2.8643 -8.0162 5.4414 25 14 1.7826 -9.6573 7.3953 26 1 0.4017 -10.0984 7.7170 27 1 2.6236 -10.8440 7.0957 28 1 2.3526 -8.9269 8.5559 29 6 -0.6518 -5.8222 2.7608 30 1 -1.6554 -5.4561 2.5446 31 6 0.2206 -4.6365 3.0336 32 1 -0.3633 0.0046 1.0276 33 1 -0.3634 0.8876 -0.5178 34 1 -0.3634 -0.8922 -0.5098 35 1 1.6582 2.1325 0.0004 36 1 4.1205 2.1324 -0.0106 37 1 5.3516 0.0000 -0.0113 38 1 4.5114 -2.8189 -1.0287 39 1 5.2886 -2.3709 0.5087 40 1 3.7471 -3.2609 0.5169 41 1 2.0318 -3.2628 -0.5040 42 1 0.4903 -2.3728 -0.4998 43 1 0.6469 -5.0799 -0.2068 44 1 -1.0188 -4.7313 0.3644 45 1 -0.6194 -8.1329 0.3487 46 1 -1.9797 -7.0502 0.7963 47 1 -0.4227 -8.9984 2.5456 48 1 -2.1440 -8.5281 2.6505 49 1 1.3341 -7.0270 3.8574 50 1 3.7087 -8.2245 5.8709 51 1 1.1344 -4.9459 3.5407 52 1 -0.3140 -3.8989 3.6320 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026279011.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:47 Heat of formation + Delta-G solvation = 10.171135 kcal Electronic energy + Delta-G solvation = -30451.288210 eV Core-core repulsion = 26608.764446 eV Total energy + Delta-G solvation = -3842.523764 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -40.65727 -39.87080 -38.21520 -35.16655 -33.66874 -33.41974 -33.27676 -30.85810 -30.04074 -28.55947 -28.39043 -26.73020 -26.58274 -25.39334 -23.41640 -22.96578 -21.14996 -20.77146 -20.02752 -18.98860 -18.76734 -17.47321 -16.72758 -16.48392 -16.29648 -15.79629 -15.06178 -14.76956 -14.61748 -14.36963 -14.30271 -13.86329 -13.68237 -13.54869 -13.29007 -13.02669 -12.98372 -12.85718 -12.76913 -12.58148 -12.52875 -12.25068 -11.85301 -11.70132 -11.58392 -11.40349 -11.22205 -10.98073 -10.95885 -10.92884 -10.81996 -10.68927 -10.45528 -10.28372 -10.05541 -9.78238 -9.60181 -9.54973 -8.91645 -8.62149 -8.57195 -8.45895 -6.96982 -5.77302 -3.06420 1.28840 1.34370 2.81967 3.02132 3.43019 3.48781 3.51079 3.69229 4.21733 4.52814 4.58786 4.68293 4.72967 4.82921 4.87565 4.94301 5.02145 5.16481 5.20497 5.27022 5.32106 5.33634 5.38518 5.49095 5.52648 5.55290 5.56641 5.59479 5.59728 5.64380 5.75335 5.80783 5.82859 5.84130 5.92613 6.01009 6.08051 6.16368 6.18330 6.27921 6.29115 6.38002 6.43370 6.45794 6.49334 6.54697 6.61821 6.66281 6.81174 6.98380 7.04593 7.67942 7.71167 8.35469 8.40908 9.52384 10.08999 10.43521 11.45045 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014221 B = 0.002723 C = 0.002465 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1968.395271 B =10279.941990 C =11358.086330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.069 4.069 3 C -0.128 4.128 4 C -0.115 4.115 5 C -0.127 4.127 6 C -0.065 4.065 7 C -0.119 4.119 8 C -0.065 4.065 9 C -0.103 4.103 10 C 0.529 3.471 11 O -0.531 6.531 12 N -0.625 5.625 13 C 0.116 3.884 14 C -0.124 4.124 15 H 0.094 0.906 16 C -0.098 4.098 17 C -0.145 4.145 18 C 0.196 3.804 19 H 0.054 0.946 20 N -0.718 5.718 21 C -0.240 4.240 22 H 0.071 0.929 23 C -0.012 4.012 24 N -0.931 5.931 25 Si 0.905 3.095 26 H -0.281 1.281 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.118 4.118 30 H 0.067 0.933 31 C 0.132 3.868 32 H 0.072 0.928 33 H 0.065 0.935 34 H 0.066 0.934 35 H 0.119 0.881 36 H 0.119 0.881 37 H 0.120 0.880 38 H 0.070 0.930 39 H 0.068 0.932 40 H 0.067 0.933 41 H 0.101 0.899 42 H 0.101 0.899 43 H 0.074 0.926 44 H 0.070 0.930 45 H 0.060 0.940 46 H 0.061 0.939 47 H 0.076 0.924 48 H 0.052 0.948 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.082 0.918 52 H 0.067 0.933 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -5.012 13.366 -17.820 22.833 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.069 4.069 3 C -0.146 4.146 4 C -0.133 4.133 5 C -0.145 4.145 6 C -0.065 4.065 7 C -0.175 4.175 8 C -0.065 4.065 9 C -0.142 4.142 10 C 0.317 3.683 11 O -0.407 6.407 12 N -0.361 5.361 13 C -0.006 4.006 14 C -0.143 4.143 15 H 0.112 0.888 16 C -0.136 4.136 17 C -0.186 4.186 18 C 0.085 3.915 19 H 0.072 0.928 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.208 4.208 24 N -0.579 5.579 25 Si 0.736 3.264 26 H -0.206 1.206 27 H -0.220 1.220 28 H -0.219 1.219 29 C -0.138 4.138 30 H 0.086 0.914 31 C 0.011 3.989 32 H 0.091 0.909 33 H 0.084 0.916 34 H 0.085 0.915 35 H 0.137 0.863 36 H 0.137 0.863 37 H 0.138 0.862 38 H 0.089 0.911 39 H 0.087 0.913 40 H 0.086 0.914 41 H 0.119 0.881 42 H 0.119 0.881 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.079 0.921 46 H 0.080 0.920 47 H 0.095 0.905 48 H 0.071 0.929 49 H 0.219 0.781 50 H 0.064 0.936 51 H 0.100 0.900 52 H 0.085 0.915 Dipole moment (debyes) X Y Z Total from point charges -4.781 13.722 -17.169 22.492 hybrid contribution 0.401 -0.551 0.746 1.011 sum -4.380 13.170 -16.423 21.502 Atomic orbital electron populations 1.20858 0.91514 1.02392 1.02636 1.19662 0.95800 0.92576 0.98844 1.20908 0.94260 0.97150 1.02294 1.21059 0.94279 0.97809 1.00129 1.20949 0.99600 0.91934 1.01995 1.19715 0.92953 0.95543 0.98282 1.20849 1.00254 0.94429 1.02000 1.18972 0.92788 0.93153 1.01584 1.20725 1.02047 0.96234 0.95225 1.20047 0.77636 0.79659 0.90946 1.90742 1.50317 1.53088 1.46536 1.49879 1.56225 1.21816 1.08203 1.21790 0.98664 0.89085 0.91084 1.22607 1.01365 0.93911 0.96456 0.88804 1.21820 0.97407 0.96211 0.98199 1.23853 1.00777 1.00310 0.93637 1.20024 0.90631 0.88934 0.91925 0.92811 1.42439 1.02845 1.56966 1.33706 1.19278 0.93043 1.20513 1.04263 0.91090 1.24741 0.95499 1.00930 0.99668 1.69668 0.97389 1.48220 1.42608 0.86151 0.77237 0.80198 0.82786 1.20582 1.21959 1.21909 1.22005 0.98616 0.95427 0.97769 0.91430 1.20932 1.00410 0.94250 0.83266 0.90909 0.91605 0.91530 0.86316 0.86286 0.86208 0.91109 0.91260 0.91384 0.88103 0.88072 0.90779 0.91182 0.92082 0.92032 0.90548 0.92900 0.78112 0.93555 0.89958 0.91479 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.14 9.60 36.00 0.35 -0.79 16 2 C -0.07 -0.82 5.88 -104.62 -0.62 -1.44 16 3 C -0.13 -1.42 9.70 -39.58 -0.38 -1.80 16 4 C -0.11 -1.24 10.05 -39.58 -0.40 -1.64 16 5 C -0.13 -1.46 9.70 -39.58 -0.38 -1.85 16 6 C -0.06 -0.82 5.88 -104.63 -0.62 -1.43 16 7 C -0.12 -1.34 9.19 36.00 0.33 -1.01 16 8 C -0.06 -0.82 4.37 -104.62 -0.46 -1.28 16 9 C -0.10 -1.18 3.80 -29.04 -0.11 -1.29 16 10 C 0.53 8.17 7.47 -10.99 -0.08 8.09 16 11 O -0.53 -10.55 16.40 5.55 0.09 -10.46 16 12 N -0.63 -9.16 3.43 -171.56 -0.59 -9.75 16 13 C 0.12 1.31 6.48 -3.04 -0.02 1.29 16 14 C -0.12 -1.69 3.09 -89.44 -0.28 -1.97 16 15 H 0.09 1.54 8.01 -51.93 -0.42 1.13 16 16 C -0.10 -1.23 6.62 -25.66 -0.17 -1.40 16 17 C -0.14 -2.31 6.74 -23.33 -0.16 -2.47 16 18 C 0.20 3.63 3.45 -67.96 -0.23 3.40 16 19 H 0.05 1.02 8.11 -51.93 -0.42 0.60 16 20 N -0.72 -17.10 4.92 -53.45 -0.26 -17.37 16 21 C -0.24 -6.45 9.97 -15.06 -0.15 -6.60 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.35 5.50 -17.43 -0.10 -0.44 16 24 N -0.93 -27.85 13.06 55.49 0.72 -27.13 16 25 Si 0.90 22.25 29.55 -169.99 -5.02 17.22 16 26 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 27 H -0.29 -7.24 7.11 56.52 0.40 -6.84 16 28 H -0.29 -7.29 7.11 56.52 0.40 -6.89 16 29 C -0.12 -1.84 2.25 -91.23 -0.21 -2.04 16 30 H 0.07 0.93 7.99 -51.93 -0.41 0.52 16 31 C 0.13 2.26 6.66 -4.12 -0.03 2.24 16 32 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 33 H 0.06 0.51 8.09 -51.93 -0.42 0.09 16 34 H 0.07 0.56 5.94 -51.93 -0.31 0.26 16 35 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 36 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 39 H 0.07 0.75 8.09 -51.93 -0.42 0.33 16 40 H 0.07 0.87 6.37 -51.93 -0.33 0.54 16 41 H 0.10 1.00 6.47 -51.93 -0.34 0.66 16 42 H 0.10 0.92 5.94 -51.93 -0.31 0.61 16 43 H 0.07 0.69 7.58 -51.93 -0.39 0.30 16 44 H 0.07 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 47 H 0.08 1.42 7.98 -51.93 -0.41 1.01 16 48 H 0.05 0.76 8.14 -51.93 -0.42 0.34 16 49 H 0.38 9.86 6.71 -40.82 -0.27 9.58 16 50 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 51 H 0.08 1.70 7.12 -51.93 -0.37 1.33 16 52 H 0.07 1.16 8.14 -51.93 -0.42 0.74 16 LS Contribution 406.80 15.07 6.13 6.13 Total: -1.00 -32.71 406.80 -11.24 -43.95 By element: Atomic # 1 Polarization: 18.44 SS G_CDS: -8.60 Total: 9.84 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -3.71 Total: -12.44 kcal Atomic # 7 Polarization: -54.12 SS G_CDS: -0.13 Total: -54.24 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.09 Total: -10.46 kcal Atomic # 14 Polarization: 22.25 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -32.71 -11.24 -43.95 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026279011.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.119 kcal (2) G-P(sol) polarization free energy of solvation -32.712 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 21.407 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.236 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.948 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.171 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds