Wall clock time and date at job start Wed Apr 1 2020 02:02:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38237 * 120.00278 * 2 1 4 4 C 1.38231 * 120.00146 * 180.22659 * 3 2 1 5 5 C 1.38235 * 120.00069 * 359.80618 * 4 3 2 6 6 C 1.38233 * 119.99873 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99944 * 180.02562 * 6 5 4 8 8 C 1.38236 * 120.00240 * 359.97438 * 6 5 4 9 9 C 1.50696 * 119.99961 * 179.97438 * 8 6 5 10 10 C 1.50694 * 109.47054 * 90.00706 * 9 8 6 11 11 O 1.21281 * 119.99880 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00243 * 179.97438 * 10 9 8 13 13 C 1.49212 * 126.05884 * 0.02562 * 12 10 9 14 14 C 1.50347 * 104.86485 * 172.91565 * 13 12 10 15 15 H 1.09000 * 110.05166 * 278.94039 * 14 13 12 16 16 C 1.51203 * 125.53723 * 144.31196 * 14 13 12 17 17 C 1.56402 * 101.50455 * 203.98298 * 16 14 13 18 18 C 1.55946 * 105.85352 * 25.03333 * 17 16 14 19 19 H 1.09003 * 110.49231 * 248.83729 * 18 17 16 20 20 N 1.46499 * 110.49264 * 126.17430 * 18 17 16 21 21 C 1.36941 * 119.99721 * 86.45422 * 20 18 17 22 22 H 1.07993 * 120.00314 * 359.97438 * 21 20 18 23 23 C 1.38816 * 119.99670 * 179.97438 * 21 20 18 24 24 N 1.31612 * 120.00079 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99776 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47125 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47230 * 120.00146 * 25 23 21 28 28 H 1.48497 * 109.47058 * 239.99708 * 25 23 21 29 29 C 1.50286 * 104.15576 * 7.50669 * 18 17 16 30 30 H 1.08998 * 109.99752 * 79.59082 * 29 18 17 31 31 C 1.49696 * 126.05862 * 179.97438 * 12 10 9 32 32 H 1.08998 * 109.48076 * 270.21734 * 1 2 3 33 33 H 1.09002 * 109.47018 * 30.22296 * 1 2 3 34 34 H 1.09004 * 109.46934 * 150.21724 * 1 2 3 35 35 H 1.08006 * 119.99377 * 0.05299 * 3 2 1 36 36 H 1.08002 * 119.99497 * 179.83361 * 4 3 2 37 37 H 1.08002 * 119.99835 * 180.02562 * 5 4 3 38 38 H 1.09002 * 109.47298 * 269.98012 * 7 6 5 39 39 H 1.08999 * 109.47156 * 29.97429 * 7 6 5 40 40 H 1.08998 * 109.47525 * 149.98167 * 7 6 5 41 41 H 1.08997 * 109.47305 * 330.00416 * 9 8 6 42 42 H 1.09007 * 109.46951 * 210.00354 * 9 8 6 43 43 H 1.09008 * 110.35748 * 291.75776 * 13 12 10 44 44 H 1.08998 * 110.36466 * 54.06145 * 13 12 10 45 45 H 1.09006 * 111.06475 * 85.92580 * 16 14 13 46 46 H 1.09009 * 111.02719 * 322.01857 * 16 14 13 47 47 H 1.09002 * 110.18631 * 265.91372 * 17 16 14 48 48 H 1.09003 * 110.18534 * 144.15021 * 17 16 14 49 49 H 0.96995 * 120.00068 * 266.44944 * 20 18 17 50 50 H 0.96995 * 120.00121 * 180.02562 * 24 23 21 51 51 H 1.08995 * 110.84858 * 36.69008 * 31 12 10 52 52 H 1.09001 * 111.02189 * 273.15372 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0047 5 6 4.2716 0.0000 -0.0054 6 6 3.5805 -1.1971 -0.0008 7 6 4.3339 -2.5022 -0.0010 8 6 2.1981 -1.1972 0.0050 9 6 1.4447 -2.5022 0.0094 10 6 1.1993 -2.9358 1.4316 11 8 1.5976 -2.2525 2.3511 12 7 0.5374 -4.0828 1.6818 13 6 -0.0088 -5.0226 0.6596 14 6 -0.4866 -6.2120 1.4454 15 1 0.3532 -6.8654 1.6820 16 6 -1.7070 -7.0449 1.1242 17 6 -2.0473 -7.6525 2.5246 18 6 -1.4536 -6.6634 3.5739 19 1 -0.6107 -7.1189 4.0935 20 7 -2.4842 -6.2499 4.5295 21 6 -2.7320 -7.0106 5.6409 22 1 -2.1681 -7.9154 5.8128 23 6 -3.7082 -6.6186 6.5467 24 7 -4.3951 -5.5156 6.3375 25 14 -4.0467 -7.6565 8.0624 26 1 -3.1465 -8.8376 8.0647 27 1 -3.8032 -6.8455 9.2823 28 1 -5.4600 -8.1119 8.0449 29 6 -0.9948 -5.4901 2.7545 30 1 -1.8445 -4.8546 2.5050 31 6 0.2208 -4.6404 3.0345 32 1 -0.3635 0.0039 1.0276 33 1 -0.3633 0.8880 -0.5173 34 1 -0.3633 -0.8920 -0.5105 35 1 1.6581 2.1325 0.0009 36 1 4.1204 2.1325 -0.0074 37 1 5.3517 0.0000 -0.0087 38 1 4.5118 -2.8190 -1.0287 39 1 5.2883 -2.3709 0.5089 40 1 3.7468 -3.2609 0.5165 41 1 2.0316 -3.2624 -0.5061 42 1 0.4901 -2.3724 -0.5007 43 1 -0.8403 -4.5615 0.1265 44 1 0.7732 -5.3190 -0.0394 45 1 -1.4681 -7.8290 0.4057 46 1 -2.5227 -6.4196 0.7610 47 1 -1.5864 -8.6346 2.6306 48 1 -3.1275 -7.7291 2.6489 49 1 -2.9909 -5.4374 4.3750 50 1 -5.0769 -5.2414 6.9706 51 1 -0.0177 -3.8419 3.7371 52 1 1.0431 -5.2506 3.4082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026279012.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:51 Heat of formation + Delta-G solvation = 8.539749 kcal Electronic energy + Delta-G solvation = -30076.241831 eV Core-core repulsion = 26233.647325 eV Total energy + Delta-G solvation = -3842.594506 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.71857 -39.91103 -38.28737 -35.29702 -33.73730 -33.51123 -33.35500 -30.93043 -30.12959 -28.64553 -28.43311 -26.79498 -26.63850 -25.37554 -23.35227 -22.88087 -21.19415 -20.84048 -20.23206 -19.21334 -18.98153 -17.18759 -16.80241 -16.66799 -16.35932 -15.98744 -15.06387 -14.86654 -14.71347 -14.57766 -14.08696 -13.91629 -13.74679 -13.61316 -13.36388 -13.07753 -13.06036 -12.90809 -12.86911 -12.72500 -12.51842 -12.19495 -11.91359 -11.76845 -11.64061 -11.58218 -11.41559 -11.06201 -11.04164 -10.98219 -10.81421 -10.77742 -10.46967 -10.16255 -10.11078 -9.86826 -9.73272 -9.56863 -8.92998 -8.68844 -8.64109 -8.60183 -6.98164 -5.78460 -3.07619 1.22102 1.27866 2.70594 2.91221 3.42379 3.48160 3.50371 3.62207 4.12497 4.45512 4.56785 4.61244 4.67138 4.76468 4.82105 4.82689 4.94776 5.10818 5.13937 5.17190 5.24153 5.27880 5.34883 5.40261 5.42789 5.49969 5.50610 5.55382 5.56661 5.57966 5.67653 5.72238 5.74624 5.84646 5.91358 5.99216 6.00167 6.04070 6.08913 6.12461 6.21096 6.32375 6.34121 6.37290 6.42044 6.49353 6.54694 6.62312 6.76861 6.91744 7.04693 7.56626 7.69893 8.23627 8.39758 9.51201 10.07920 10.42242 11.44058 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016547 B = 0.002363 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.699788 B =11846.357857 C =12521.853504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.066 4.066 3 C -0.127 4.127 4 C -0.114 4.114 5 C -0.128 4.128 6 C -0.068 4.068 7 C -0.116 4.116 8 C -0.065 4.065 9 C -0.103 4.103 10 C 0.530 3.470 11 O -0.531 6.531 12 N -0.627 5.627 13 C 0.121 3.879 14 C -0.130 4.130 15 H 0.081 0.919 16 C -0.097 4.097 17 C -0.144 4.144 18 C 0.196 3.804 19 H 0.054 0.946 20 N -0.720 5.720 21 C -0.239 4.239 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.280 1.280 27 H -0.292 1.292 28 H -0.292 1.292 29 C -0.116 4.116 30 H 0.081 0.919 31 C 0.130 3.870 32 H 0.074 0.926 33 H 0.066 0.934 34 H 0.066 0.934 35 H 0.120 0.880 36 H 0.119 0.881 37 H 0.119 0.881 38 H 0.070 0.930 39 H 0.067 0.933 40 H 0.065 0.935 41 H 0.100 0.900 42 H 0.103 0.897 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.060 0.940 46 H 0.065 0.935 47 H 0.054 0.946 48 H 0.074 0.926 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.082 0.918 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.394 6.848 -20.182 25.717 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.066 4.066 3 C -0.145 4.145 4 C -0.132 4.132 5 C -0.146 4.146 6 C -0.068 4.068 7 C -0.173 4.173 8 C -0.066 4.066 9 C -0.142 4.142 10 C 0.318 3.682 11 O -0.407 6.407 12 N -0.363 5.363 13 C -0.001 4.001 14 C -0.150 4.150 15 H 0.099 0.901 16 C -0.135 4.135 17 C -0.185 4.185 18 C 0.085 3.915 19 H 0.072 0.928 20 N -0.361 5.361 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.205 1.205 27 H -0.219 1.219 28 H -0.219 1.219 29 C -0.136 4.136 30 H 0.099 0.901 31 C 0.009 3.991 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.085 0.915 35 H 0.138 0.862 36 H 0.138 0.862 37 H 0.137 0.863 38 H 0.089 0.911 39 H 0.086 0.914 40 H 0.084 0.916 41 H 0.118 0.882 42 H 0.121 0.879 43 H 0.087 0.913 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.084 0.916 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.100 0.900 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 14.654 7.186 -19.530 25.452 hybrid contribution -0.458 -0.280 0.824 0.983 sum 14.196 6.907 -18.707 24.478 Atomic orbital electron populations 1.20884 0.91332 1.02519 1.02880 1.19698 0.95925 0.92562 0.98449 1.20941 0.94262 0.97259 1.02006 1.21065 0.94288 0.97828 1.00037 1.20926 0.99513 0.91951 1.02180 1.19672 0.92926 0.95449 0.98760 1.20824 1.00036 0.94488 1.01948 1.18963 0.92743 0.93171 1.01682 1.20725 1.02200 0.96187 0.95136 1.20072 0.77581 0.79530 0.91006 1.90741 1.50506 1.52967 1.46526 1.49908 1.56288 1.21843 1.08267 1.21270 0.98169 0.89981 0.90701 1.22218 0.99251 0.95927 0.97577 0.90064 1.21785 0.95482 0.98120 0.98128 1.23807 1.02482 0.98978 0.93194 1.20086 0.91687 0.90664 0.89057 0.92834 1.42498 1.41412 1.28733 1.23425 1.19276 1.15304 1.03999 0.98488 0.91093 1.24749 0.99171 0.97771 0.99203 1.69664 1.26593 1.24084 1.37636 0.86144 0.77629 0.79379 0.83190 1.20547 1.21874 1.21909 1.22488 0.97089 0.97458 0.96582 0.90068 1.21477 0.96548 0.97406 0.83689 0.90693 0.91488 0.91478 0.86203 0.86250 0.86270 0.91148 0.91409 0.91631 0.88185 0.87904 0.91258 0.91240 0.92165 0.91615 0.92716 0.90722 0.78166 0.93538 0.89994 0.91244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.20 9.60 36.00 0.35 -0.85 16 2 C -0.07 -0.77 5.88 -104.63 -0.62 -1.39 16 3 C -0.13 -1.35 9.70 -39.58 -0.38 -1.74 16 4 C -0.11 -1.15 10.05 -39.59 -0.40 -1.55 16 5 C -0.13 -1.33 9.70 -39.58 -0.38 -1.72 16 6 C -0.07 -0.77 5.88 -104.63 -0.62 -1.38 16 7 C -0.12 -1.07 9.19 36.00 0.33 -0.74 16 8 C -0.07 -0.77 4.37 -104.62 -0.46 -1.23 16 9 C -0.10 -1.08 3.98 -29.04 -0.12 -1.20 16 10 C 0.53 7.53 7.46 -10.99 -0.08 7.45 16 11 O -0.53 -9.84 16.37 5.56 0.09 -9.75 16 12 N -0.63 -8.38 3.43 -171.55 -0.59 -8.97 16 13 C 0.12 1.24 6.41 -3.86 -0.02 1.22 16 14 C -0.13 -1.54 2.77 -90.16 -0.25 -1.79 16 15 H 0.08 0.95 8.14 -51.93 -0.42 0.53 16 16 C -0.10 -1.18 6.73 -25.81 -0.17 -1.35 16 17 C -0.14 -2.30 6.73 -23.33 -0.16 -2.46 16 18 C 0.20 3.64 3.39 -67.71 -0.23 3.41 16 19 H 0.05 1.02 8.12 -51.93 -0.42 0.60 16 20 N -0.72 -17.39 5.12 -53.21 -0.27 -17.66 16 21 C -0.24 -6.48 9.98 -15.06 -0.15 -6.63 16 22 H 0.07 1.87 7.83 -52.49 -0.41 1.46 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -27.91 13.06 55.49 0.72 -27.18 16 25 Si 0.91 22.23 29.55 -169.99 -5.02 17.21 16 26 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 27 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 28 H -0.29 -7.21 7.11 56.52 0.40 -6.81 16 29 C -0.12 -1.81 2.40 -90.32 -0.22 -2.03 16 30 H 0.08 1.38 7.93 -51.93 -0.41 0.97 16 31 C 0.13 2.02 6.81 -3.30 -0.02 2.00 16 32 H 0.07 0.86 8.14 -51.93 -0.42 0.44 16 33 H 0.07 0.54 8.09 -51.93 -0.42 0.12 16 34 H 0.07 0.59 5.94 -51.93 -0.31 0.28 16 35 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 36 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.56 16 38 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 40 H 0.06 0.66 6.37 -51.93 -0.33 0.33 16 41 H 0.10 0.84 6.70 -51.93 -0.35 0.49 16 42 H 0.10 0.90 5.94 -51.93 -0.31 0.59 16 43 H 0.07 0.65 8.14 -51.92 -0.42 0.23 16 44 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 0.80 8.14 -51.92 -0.42 0.38 16 47 H 0.05 0.82 8.14 -51.93 -0.42 0.40 16 48 H 0.07 1.38 7.98 -51.93 -0.41 0.97 16 49 H 0.38 9.99 7.65 -40.82 -0.31 9.67 16 50 H 0.25 7.41 8.31 -40.82 -0.34 7.07 16 51 H 0.08 1.47 8.09 -51.93 -0.42 1.05 16 52 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 LS Contribution 409.87 15.07 6.18 6.18 Total: -1.00 -32.76 409.87 -11.32 -44.08 By element: Atomic # 1 Polarization: 17.27 SS G_CDS: -8.73 Total: 8.53 kcal Atomic # 6 Polarization: -8.74 SS G_CDS: -3.70 Total: -12.43 kcal Atomic # 7 Polarization: -53.68 SS G_CDS: -0.14 Total: -53.81 kcal Atomic # 8 Polarization: -9.84 SS G_CDS: 0.09 Total: -9.75 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 6.18 Total: 6.18 kcal Total: -32.76 -11.32 -44.08 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026279012.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 52.618 kcal (2) G-P(sol) polarization free energy of solvation -32.756 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.861 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.322 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.078 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds