Wall clock time and date at job start Wed Apr 1 2020 02:02:50 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38237 * 120.00278 * 2 1 4 4 C 1.38231 * 120.00146 * 180.22659 * 3 2 1 5 5 C 1.38235 * 120.00069 * 359.80618 * 4 3 2 6 6 C 1.38233 * 119.99873 * 359.97438 * 5 4 3 7 7 C 1.50698 * 119.99944 * 180.02562 * 6 5 4 8 8 C 1.38236 * 120.00240 * 359.97438 * 6 5 4 9 9 C 1.50696 * 119.99961 * 179.97438 * 8 6 5 10 10 C 1.50694 * 109.47054 * 90.00706 * 9 8 6 11 11 O 1.21281 * 119.99880 * 359.97438 * 10 9 8 12 12 N 1.34776 * 120.00243 * 179.97438 * 10 9 8 13 13 C 1.49212 * 126.05884 * 0.02562 * 12 10 9 14 14 C 1.50347 * 104.86485 * 172.91565 * 13 12 10 15 15 H 1.09000 * 110.05166 * 278.94039 * 14 13 12 16 16 C 1.51203 * 125.53723 * 144.31196 * 14 13 12 17 17 C 1.56402 * 101.50455 * 203.98298 * 16 14 13 18 18 C 1.55946 * 105.85352 * 25.03333 * 17 16 14 19 19 H 1.09003 * 110.49231 * 248.83729 * 18 17 16 20 20 N 1.46499 * 110.49264 * 126.17430 * 18 17 16 21 21 C 1.36941 * 119.99721 * 86.45422 * 20 18 17 22 22 H 1.07993 * 120.00314 * 359.97438 * 21 20 18 23 23 C 1.38816 * 119.99670 * 179.97438 * 21 20 18 24 24 N 1.31612 * 120.00079 * 359.97438 * 23 21 20 25 25 Si 1.86800 * 119.99776 * 179.97438 * 23 21 20 26 26 H 1.48502 * 109.47125 * 359.97438 * 25 23 21 27 27 H 1.48504 * 109.47230 * 120.00146 * 25 23 21 28 28 H 1.48497 * 109.47058 * 239.99708 * 25 23 21 29 29 C 1.50286 * 104.15576 * 7.50669 * 18 17 16 30 30 H 1.08998 * 109.99752 * 79.59082 * 29 18 17 31 31 C 1.49696 * 126.05862 * 179.97438 * 12 10 9 32 32 H 1.08998 * 109.48076 * 270.21734 * 1 2 3 33 33 H 1.09002 * 109.47018 * 30.22296 * 1 2 3 34 34 H 1.09004 * 109.46934 * 150.21724 * 1 2 3 35 35 H 1.08006 * 119.99377 * 0.05299 * 3 2 1 36 36 H 1.08002 * 119.99497 * 179.83361 * 4 3 2 37 37 H 1.08002 * 119.99835 * 180.02562 * 5 4 3 38 38 H 1.09002 * 109.47298 * 269.98012 * 7 6 5 39 39 H 1.08999 * 109.47156 * 29.97429 * 7 6 5 40 40 H 1.08998 * 109.47525 * 149.98167 * 7 6 5 41 41 H 1.08997 * 109.47305 * 330.00416 * 9 8 6 42 42 H 1.09007 * 109.46951 * 210.00354 * 9 8 6 43 43 H 1.09008 * 110.35748 * 291.75776 * 13 12 10 44 44 H 1.08998 * 110.36466 * 54.06145 * 13 12 10 45 45 H 1.09006 * 111.06475 * 85.92580 * 16 14 13 46 46 H 1.09009 * 111.02719 * 322.01857 * 16 14 13 47 47 H 1.09002 * 110.18631 * 265.91372 * 17 16 14 48 48 H 1.09003 * 110.18534 * 144.15021 * 17 16 14 49 49 H 0.96995 * 120.00068 * 266.44944 * 20 18 17 50 50 H 0.96995 * 120.00121 * 180.02562 * 24 23 21 51 51 H 1.08995 * 110.84858 * 36.69008 * 31 12 10 52 52 H 1.09001 * 111.02189 * 273.15372 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1971 0.0000 4 6 3.5805 1.1971 -0.0047 5 6 4.2716 0.0000 -0.0054 6 6 3.5805 -1.1971 -0.0008 7 6 4.3339 -2.5022 -0.0010 8 6 2.1981 -1.1972 0.0050 9 6 1.4447 -2.5022 0.0094 10 6 1.1993 -2.9358 1.4316 11 8 1.5976 -2.2525 2.3511 12 7 0.5374 -4.0828 1.6818 13 6 -0.0088 -5.0226 0.6596 14 6 -0.4866 -6.2120 1.4454 15 1 0.3532 -6.8654 1.6820 16 6 -1.7070 -7.0449 1.1242 17 6 -2.0473 -7.6525 2.5246 18 6 -1.4536 -6.6634 3.5739 19 1 -0.6107 -7.1189 4.0935 20 7 -2.4842 -6.2499 4.5295 21 6 -2.7320 -7.0106 5.6409 22 1 -2.1681 -7.9154 5.8128 23 6 -3.7082 -6.6186 6.5467 24 7 -4.3951 -5.5156 6.3375 25 14 -4.0467 -7.6565 8.0624 26 1 -3.1465 -8.8376 8.0647 27 1 -3.8032 -6.8455 9.2823 28 1 -5.4600 -8.1119 8.0449 29 6 -0.9948 -5.4901 2.7545 30 1 -1.8445 -4.8546 2.5050 31 6 0.2208 -4.6404 3.0345 32 1 -0.3635 0.0039 1.0276 33 1 -0.3633 0.8880 -0.5173 34 1 -0.3633 -0.8920 -0.5105 35 1 1.6581 2.1325 0.0009 36 1 4.1204 2.1325 -0.0074 37 1 5.3517 0.0000 -0.0087 38 1 4.5118 -2.8190 -1.0287 39 1 5.2883 -2.3709 0.5089 40 1 3.7468 -3.2609 0.5165 41 1 2.0316 -3.2624 -0.5061 42 1 0.4901 -2.3724 -0.5007 43 1 -0.8403 -4.5615 0.1265 44 1 0.7732 -5.3190 -0.0394 45 1 -1.4681 -7.8290 0.4057 46 1 -2.5227 -6.4196 0.7610 47 1 -1.5864 -8.6346 2.6306 48 1 -3.1275 -7.7291 2.6489 49 1 -2.9909 -5.4374 4.3750 50 1 -5.0769 -5.2414 6.9706 51 1 -0.0177 -3.8419 3.7371 52 1 1.0431 -5.2506 3.4082 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026279012.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:50 Heat of formation + Delta-G solvation = -9.514442 kcal Electronic energy + Delta-G solvation = -30077.024719 eV Core-core repulsion = 26233.647325 eV Total energy + Delta-G solvation = -3843.377395 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.79143 -40.83943 -39.39662 -36.76119 -35.06856 -34.48701 -34.29672 -32.67084 -31.25270 -29.88555 -29.40984 -27.54636 -27.52624 -26.84603 -24.89552 -24.28434 -22.04795 -21.60548 -21.41649 -20.48037 -20.06283 -19.11278 -17.90907 -17.74898 -17.23010 -16.94665 -16.47606 -16.13024 -15.83396 -15.58612 -15.42918 -15.30882 -14.99133 -14.60378 -14.42234 -14.07982 -14.00109 -13.85129 -13.80914 -13.57565 -13.56340 -13.26356 -13.15300 -13.09684 -12.99440 -12.61922 -12.51888 -12.45083 -12.40165 -12.18585 -12.09231 -11.80170 -11.77651 -11.72726 -11.57195 -11.35413 -11.04349 -10.96900 -10.82275 -9.70862 -9.49548 -9.41662 -8.98919 -7.94343 -5.22247 0.41892 0.48993 1.46017 1.46835 1.56506 1.63793 1.86908 2.55867 2.81543 3.00688 3.40211 3.62230 3.70313 3.75633 3.87948 3.98925 4.04073 4.06449 4.11060 4.18415 4.27434 4.29897 4.39969 4.44934 4.47446 4.54548 4.55260 4.60679 4.69872 4.72887 4.74578 4.77402 4.78208 4.80805 4.82099 4.95481 4.97404 4.98321 4.99257 5.10035 5.20700 5.24963 5.29114 5.34228 5.38715 5.48811 5.54511 5.60340 5.65117 5.65441 5.75377 6.16558 6.28307 6.52651 7.15781 7.33754 8.11023 8.32628 9.29505 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016547 B = 0.002363 C = 0.002236 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1691.699788 B =11846.357857 C =12521.853504 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.117 4.117 2 C -0.087 4.087 3 C -0.142 4.142 4 C -0.121 4.121 5 C -0.140 4.140 6 C -0.084 4.084 7 C -0.114 4.114 8 C -0.086 4.086 9 C -0.092 4.092 10 C 0.527 3.473 11 O -0.585 6.585 12 N -0.625 5.625 13 C 0.120 3.880 14 C -0.106 4.106 15 H 0.092 0.908 16 C -0.083 4.083 17 C -0.138 4.138 18 C 0.186 3.814 19 H 0.047 0.953 20 N -0.735 5.735 21 C -0.233 4.233 22 H 0.077 0.923 23 C -0.079 4.079 24 N -0.972 5.972 25 Si 0.969 3.031 26 H -0.264 1.264 27 H -0.298 1.298 28 H -0.294 1.294 29 C -0.120 4.120 30 H 0.064 0.936 31 C 0.131 3.869 32 H 0.051 0.949 33 H 0.083 0.917 34 H 0.079 0.921 35 H 0.134 0.866 36 H 0.141 0.859 37 H 0.138 0.862 38 H 0.094 0.906 39 H 0.071 0.929 40 H 0.055 0.945 41 H 0.129 0.871 42 H 0.123 0.877 43 H 0.087 0.913 44 H 0.110 0.890 45 H 0.095 0.905 46 H 0.067 0.933 47 H 0.067 0.933 48 H 0.045 0.955 49 H 0.370 0.630 50 H 0.249 0.751 51 H 0.043 0.957 52 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 16.008 5.462 -23.192 28.705 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.174 4.174 2 C -0.087 4.087 3 C -0.160 4.160 4 C -0.138 4.138 5 C -0.158 4.158 6 C -0.084 4.084 7 C -0.170 4.170 8 C -0.087 4.087 9 C -0.131 4.131 10 C 0.317 3.683 11 O -0.465 6.465 12 N -0.360 5.360 13 C 0.000 4.000 14 C -0.125 4.125 15 H 0.110 0.890 16 C -0.121 4.121 17 C -0.179 4.179 18 C 0.077 3.923 19 H 0.065 0.935 20 N -0.374 5.374 21 C -0.365 4.365 22 H 0.095 0.905 23 C -0.271 4.271 24 N -0.623 5.623 25 Si 0.799 3.201 26 H -0.188 1.188 27 H -0.225 1.225 28 H -0.221 1.221 29 C -0.140 4.140 30 H 0.082 0.918 31 C 0.009 3.991 32 H 0.070 0.930 33 H 0.102 0.898 34 H 0.097 0.903 35 H 0.152 0.848 36 H 0.159 0.841 37 H 0.156 0.844 38 H 0.112 0.888 39 H 0.089 0.911 40 H 0.074 0.926 41 H 0.146 0.854 42 H 0.141 0.859 43 H 0.105 0.895 44 H 0.128 0.872 45 H 0.114 0.886 46 H 0.086 0.914 47 H 0.086 0.914 48 H 0.064 0.936 49 H 0.202 0.798 50 H 0.058 0.942 51 H 0.061 0.939 52 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges 16.300 5.741 -22.605 28.454 hybrid contribution -0.874 0.169 1.756 1.969 sum 15.426 5.910 -20.849 26.600 Atomic orbital electron populations 1.20877 0.90717 1.04007 1.01768 1.20006 0.96711 0.93107 0.98860 1.21245 0.94905 0.97749 1.02085 1.21404 0.94330 0.98850 0.99256 1.21259 1.00654 0.91940 1.01924 1.20038 0.93152 0.96662 0.98544 1.20844 0.99670 0.93195 1.03312 1.19219 0.93342 0.93754 1.02370 1.20736 1.03572 0.96361 0.92416 1.20792 0.76494 0.78852 0.92131 1.90716 1.52760 1.54557 1.48456 1.49945 1.55895 1.22236 1.07884 1.21540 1.00017 0.88376 0.90073 1.22199 0.99311 0.96136 0.94894 0.88973 1.21700 0.95478 0.98863 0.96042 1.23599 1.00400 0.98996 0.94858 1.20384 0.90221 0.92688 0.89049 0.93514 1.42720 1.42550 1.28089 1.24090 1.19659 1.14168 1.03788 0.98868 0.90526 1.25539 0.99907 0.99260 1.02417 1.69822 1.27665 1.26082 1.38707 0.85128 0.77370 0.78215 0.79422 1.18837 1.22529 1.22107 1.22237 0.96455 0.96787 0.98554 0.91793 1.21269 0.96753 0.96271 0.84774 0.92980 0.89828 0.90266 0.84816 0.84096 0.84425 0.88802 0.91052 0.92619 0.85352 0.85917 0.89525 0.87175 0.88641 0.91438 0.91433 0.93635 0.79791 0.94219 0.93853 0.90909 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.28 9.60 71.23 0.68 -1.60 16 2 C -0.09 -1.97 5.88 -19.87 -0.12 -2.08 16 3 C -0.14 -2.95 9.70 22.27 0.22 -2.73 16 4 C -0.12 -2.30 10.05 22.27 0.22 -2.08 16 5 C -0.14 -2.74 9.70 22.27 0.22 -2.52 16 6 C -0.08 -1.78 5.88 -19.87 -0.12 -1.89 16 7 C -0.11 -1.84 9.19 71.24 0.65 -1.19 16 8 C -0.09 -1.94 4.37 -19.87 -0.09 -2.03 16 9 C -0.09 -1.71 3.98 29.10 0.12 -1.60 16 10 C 0.53 14.57 7.46 87.66 0.65 15.22 16 11 O -0.58 -22.33 16.37 -3.03 -0.05 -22.38 16 12 N -0.62 -15.84 3.43 -815.06 -2.79 -18.63 16 13 C 0.12 1.99 6.41 85.00 0.54 2.54 16 14 C -0.11 -2.16 2.77 -10.50 -0.03 -2.19 16 15 H 0.09 1.76 8.14 -2.39 -0.02 1.74 16 16 C -0.08 -1.72 6.73 31.19 0.21 -1.51 16 17 C -0.14 -4.24 6.73 32.80 0.22 -4.01 16 18 C 0.19 6.92 3.39 45.14 0.15 7.07 16 19 H 0.05 1.79 8.12 -2.39 -0.02 1.77 16 20 N -0.74 -36.73 5.12 -322.25 -1.65 -38.38 16 21 C -0.23 -12.86 9.98 84.03 0.84 -12.02 16 22 H 0.08 4.06 7.83 -2.91 -0.02 4.03 16 23 C -0.08 -4.60 5.50 84.86 0.47 -4.13 16 24 N -0.97 -60.38 13.06 21.65 0.28 -60.10 16 25 Si 0.97 46.64 29.55 68.60 2.03 48.67 16 26 H -0.26 -11.84 7.11 99.48 0.71 -11.13 16 27 H -0.30 -14.51 7.11 99.48 0.71 -13.80 16 28 H -0.29 -14.11 7.11 99.48 0.71 -13.40 16 29 C -0.12 -3.73 2.40 -10.60 -0.03 -3.75 16 30 H 0.06 2.22 7.93 -2.39 -0.02 2.20 16 31 C 0.13 4.18 6.81 85.09 0.58 4.75 16 32 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 33 H 0.08 1.28 8.09 -2.39 -0.02 1.26 16 34 H 0.08 1.28 5.94 -2.38 -0.01 1.27 16 35 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 36 H 0.14 1.93 8.06 -2.91 -0.02 1.91 16 37 H 0.14 2.03 8.06 -2.91 -0.02 2.01 16 38 H 0.09 1.04 8.14 -2.39 -0.02 1.02 16 39 H 0.07 1.08 8.09 -2.39 -0.02 1.06 16 40 H 0.05 1.01 6.37 -2.39 -0.02 0.99 16 41 H 0.13 1.64 6.70 -2.39 -0.02 1.62 16 42 H 0.12 1.77 5.94 -2.38 -0.01 1.76 16 43 H 0.09 1.22 8.14 -2.38 -0.02 1.20 16 44 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 45 H 0.10 1.43 8.14 -2.38 -0.02 1.41 16 46 H 0.07 1.43 8.14 -2.38 -0.02 1.41 16 47 H 0.07 1.88 8.14 -2.39 -0.02 1.87 16 48 H 0.04 1.67 7.98 -2.39 -0.02 1.65 16 49 H 0.37 20.26 7.65 -92.71 -0.71 19.55 16 50 H 0.25 15.05 8.31 -92.71 -0.77 14.28 16 51 H 0.04 1.68 8.09 -2.39 -0.02 1.66 16 52 H 0.07 2.23 8.14 -2.39 -0.02 2.21 16 Total: -1.00 -75.96 409.87 3.42 -72.54 By element: Atomic # 1 Polarization: 33.82 SS G_CDS: 0.20 Total: 34.02 kcal Atomic # 6 Polarization: -21.15 SS G_CDS: 5.40 Total: -15.75 kcal Atomic # 7 Polarization: -112.95 SS G_CDS: -4.16 Total: -117.11 kcal Atomic # 8 Polarization: -22.33 SS G_CDS: -0.05 Total: -22.38 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -75.96 3.42 -72.54 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026279012.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 63.030 kcal (2) G-P(sol) polarization free energy of solvation -75.963 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.933 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.419 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.544 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.514 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds