Wall clock time and date at job start Wed Apr 1 2020 02:59:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50689 * 109.47457 * 2 1 4 4 C 1.38261 * 119.99975 * 265.20938 * 3 2 1 5 5 C 1.38216 * 119.99840 * 180.22936 * 4 3 2 6 6 C 1.38261 * 120.00226 * 359.81304 * 5 4 3 7 7 C 1.38214 * 119.99572 * 359.97438 * 6 5 4 8 8 C 1.38213 * 120.00315 * 84.99642 * 3 2 1 9 9 C 1.50706 * 119.99928 * 0.02562 * 8 3 2 10 10 C 1.50695 * 109.47145 * 84.72299 * 9 8 3 11 11 O 1.21284 * 119.99958 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00268 * 180.02562 * 10 9 8 13 13 C 1.49624 * 126.07045 * 359.97290 * 12 10 9 14 14 C 1.51523 * 102.67120 * 154.23751 * 13 12 10 15 15 H 1.09004 * 111.12305 * 288.23811 * 14 13 12 16 16 C 1.51324 * 123.51516 * 151.34916 * 14 13 12 17 17 C 1.56343 * 101.94228 * 208.26512 * 16 14 13 18 18 C 1.55996 * 105.77082 * 25.55932 * 17 16 14 19 19 H 1.09009 * 110.64406 * 248.27493 * 18 17 16 20 20 N 1.46501 * 110.52789 * 125.58966 * 18 17 16 21 21 C 1.36928 * 120.00234 * 90.43171 * 20 18 17 22 22 H 1.08002 * 120.00117 * 359.97438 * 21 20 18 23 23 C 1.38816 * 120.00126 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99644 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00215 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47353 * 90.00004 * 25 23 21 27 27 H 1.48501 * 109.47103 * 209.99955 * 25 23 21 28 28 H 1.48496 * 109.47105 * 329.99758 * 25 23 21 29 29 C 1.49703 * 103.99082 * 6.95951 * 18 17 16 30 30 H 1.08995 * 108.54664 * 76.79930 * 29 18 17 31 31 C 1.49293 * 126.07500 * 179.97438 * 12 10 9 32 32 H 1.08998 * 109.47052 * 60.00409 * 1 2 3 33 33 H 1.08999 * 109.47287 * 180.02562 * 1 2 3 34 34 H 1.08992 * 109.47057 * 300.00138 * 1 2 3 35 35 H 1.09000 * 109.46882 * 239.99687 * 2 1 3 36 36 H 1.09003 * 109.46713 * 120.00236 * 2 1 3 37 37 H 1.07995 * 120.00057 * 0.06281 * 4 3 2 38 38 H 1.08000 * 119.99861 * 179.83492 * 5 4 3 39 39 H 1.07997 * 119.99870 * 180.02562 * 6 5 4 40 40 H 1.08001 * 119.99938 * 179.97438 * 7 6 5 41 41 H 1.09000 * 109.46882 * 324.72875 * 9 8 3 42 42 H 1.08993 * 109.47164 * 204.72645 * 9 8 3 43 43 H 1.09002 * 110.80542 * 272.58629 * 13 12 10 44 44 H 1.09004 * 110.80248 * 35.89264 * 13 12 10 45 45 H 1.08995 * 110.79393 * 90.13496 * 16 14 13 46 46 H 1.09001 * 111.03153 * 326.49581 * 16 14 13 47 47 H 1.09001 * 110.18372 * 266.48427 * 17 16 14 48 48 H 1.08993 * 110.18630 * 144.63481 * 17 16 14 49 49 H 0.97003 * 119.99361 * 270.43304 * 20 18 17 50 50 H 0.96999 * 119.99612 * 179.97438 * 24 23 21 51 51 H 1.08997 * 110.39275 * 292.42827 * 31 12 10 52 52 H 1.08999 * 110.39611 * 54.71856 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3572 2.0391 -1.1932 5 6 2.8225 3.3406 -1.1928 6 6 2.9595 4.0254 0.0005 7 6 2.6307 3.4086 1.1929 8 6 2.1644 2.1071 1.1924 9 6 1.8064 1.4345 2.4926 10 6 2.9837 0.6323 2.9840 11 8 4.0124 0.6094 2.3419 12 7 2.8936 -0.0597 4.1370 13 6 1.6972 -0.1267 5.0330 14 6 1.8828 -1.4559 5.7365 15 1 1.7012 -2.2886 5.0570 16 6 1.3601 -1.7456 7.1267 17 6 2.3774 -2.8170 7.6380 18 6 3.6932 -2.5682 6.8379 19 1 3.8879 -3.3931 6.1524 20 7 4.8232 -2.3840 7.7519 21 6 5.5644 -3.4641 8.1506 22 1 5.3158 -4.4519 7.7916 23 6 6.6348 -3.2896 9.0170 24 7 6.9375 -2.0859 9.4549 25 14 7.6456 -4.7632 9.5615 26 1 8.7687 -4.9710 8.6125 27 1 8.1866 -4.5167 10.9223 28 1 6.7850 -5.9732 9.5826 29 6 3.4217 -1.3073 6.0780 30 1 3.5071 -0.4642 6.7635 31 6 3.9698 -0.8954 4.7471 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8899 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 2.2498 1.5043 -2.1253 38 1 3.0787 3.8227 -2.1246 39 1 3.3227 5.0425 0.0007 40 1 2.7381 3.9434 2.1250 41 1 0.9551 0.7719 2.3366 42 1 1.5473 2.1907 3.2336 43 1 1.7035 0.6947 5.7495 44 1 0.7762 -0.1226 4.4500 45 1 0.3511 -2.1555 7.0830 46 1 1.3891 -0.8517 7.7497 47 1 1.9996 -3.8198 7.4385 48 1 2.5558 -2.6870 8.7054 49 1 5.0463 -1.4969 8.0746 50 1 7.6853 -1.9640 10.0606 51 1 4.1661 -1.7719 4.1296 52 1 4.8800 -0.3093 4.8739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026294786.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:38 Heat of formation + Delta-G solvation = 7.272101 kcal Electronic energy + Delta-G solvation = -29946.553071 eV Core-core repulsion = 26103.903595 eV Total energy + Delta-G solvation = -3842.649476 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -40.69385 -39.85359 -38.29226 -35.30041 -34.50306 -33.39742 -32.75236 -30.93242 -29.99927 -29.56379 -28.46915 -27.44109 -25.42406 -24.07605 -23.33918 -22.93672 -22.05203 -20.78419 -20.20162 -19.20443 -19.04787 -17.20061 -16.82225 -16.69002 -16.32897 -16.13554 -15.28407 -15.01987 -14.82696 -14.57308 -14.00663 -13.95888 -13.77171 -13.72921 -13.71913 -13.22542 -13.21314 -12.88402 -12.65964 -12.44397 -12.23532 -12.16127 -11.96358 -11.82134 -11.56778 -11.50855 -11.40963 -11.04351 -10.98715 -10.87296 -10.81083 -10.78225 -10.49687 -10.15224 -10.13115 -9.85111 -9.75641 -9.57068 -8.93743 -8.90967 -8.71213 -8.59832 -6.98944 -5.78650 -3.07790 1.19387 1.27988 2.69078 2.90340 3.42919 3.48201 3.49575 3.63627 4.12330 4.44301 4.55560 4.56619 4.62183 4.73029 4.76460 4.88112 4.95995 5.03693 5.08921 5.14194 5.20233 5.26023 5.28143 5.33973 5.38573 5.40758 5.45836 5.54567 5.59738 5.67616 5.70515 5.72949 5.83865 5.86302 5.91121 5.94312 6.00537 6.01892 6.03631 6.13358 6.21168 6.32260 6.33953 6.37014 6.38717 6.49203 6.51718 6.61680 6.77075 6.87880 7.03570 7.55637 7.69144 8.22111 8.39570 9.50972 10.07363 10.41824 11.43818 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.002290 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.421836 B =12221.899698 C =12890.562633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.089 4.089 3 C -0.063 4.063 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.125 4.125 7 C -0.104 4.104 8 C -0.062 4.062 9 C -0.101 4.101 10 C 0.528 3.472 11 O -0.532 6.532 12 N -0.626 5.626 13 C 0.117 3.883 14 C -0.128 4.128 15 H 0.086 0.914 16 C -0.099 4.099 17 C -0.143 4.143 18 C 0.199 3.801 19 H 0.056 0.944 20 N -0.720 5.720 21 C -0.240 4.240 22 H 0.071 0.929 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.906 3.094 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C -0.120 4.120 30 H 0.074 0.926 31 C 0.135 3.865 32 H 0.056 0.944 33 H 0.059 0.941 34 H 0.055 0.945 35 H 0.072 0.928 36 H 0.071 0.929 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.120 0.880 41 H 0.102 0.898 42 H 0.099 0.901 43 H 0.073 0.927 44 H 0.074 0.926 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.055 0.945 48 H 0.074 0.926 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.068 0.932 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.802 9.393 -17.626 26.755 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.126 4.126 3 C -0.063 4.063 4 C -0.137 4.137 5 C -0.137 4.137 6 C -0.143 4.143 7 C -0.122 4.122 8 C -0.062 4.062 9 C -0.141 4.141 10 C 0.316 3.684 11 O -0.409 6.409 12 N -0.362 5.362 13 C -0.005 4.005 14 C -0.148 4.148 15 H 0.104 0.896 16 C -0.137 4.137 17 C -0.184 4.184 18 C 0.087 3.913 19 H 0.074 0.926 20 N -0.360 5.360 21 C -0.371 4.371 22 H 0.089 0.911 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.217 1.217 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.140 4.140 30 H 0.092 0.908 31 C 0.014 3.986 32 H 0.075 0.925 33 H 0.078 0.922 34 H 0.074 0.926 35 H 0.090 0.910 36 H 0.090 0.910 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.138 0.862 41 H 0.120 0.880 42 H 0.118 0.882 43 H 0.091 0.909 44 H 0.093 0.907 45 H 0.078 0.922 46 H 0.085 0.915 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.086 0.914 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -17.119 9.270 -18.011 26.521 hybrid contribution 0.755 -0.403 0.580 1.034 sum -16.364 8.867 -17.431 25.500 Atomic orbital electron populations 1.21769 0.94679 1.01839 1.02094 1.20570 0.95938 0.92904 1.03231 1.19660 0.98363 0.95650 0.92623 1.20969 1.00242 0.95211 0.97297 1.21097 0.99751 0.94851 0.98001 1.21060 1.00733 0.99975 0.92537 1.20980 0.98514 0.94512 0.98210 1.19132 0.99984 0.94011 0.93102 1.20723 0.97639 0.99904 0.95837 1.20094 0.89357 0.79347 0.79565 1.90744 1.31286 1.63171 1.55663 1.49918 1.15435 1.48791 1.22064 1.21771 0.87801 0.97967 0.92995 1.22609 0.97984 0.96646 0.97548 0.89551 1.21799 0.98407 0.99885 0.93644 1.23796 0.95755 0.96989 1.01877 1.19940 0.87856 0.93103 0.90366 0.92626 1.42494 1.31812 1.08078 1.53619 1.19242 1.07623 0.88290 1.21990 0.91138 1.24747 0.99205 0.96526 1.00392 1.69659 1.30972 1.20091 1.37322 0.86207 0.80376 0.81934 0.77775 1.21705 1.21808 1.20757 1.22195 0.94656 1.01427 0.95682 0.90766 1.20951 0.89915 0.94493 0.93245 0.92476 0.92239 0.92557 0.90958 0.90998 0.86253 0.86274 0.86191 0.86233 0.87960 0.88239 0.90889 0.90745 0.92212 0.91524 0.92660 0.90744 0.78176 0.93491 0.91413 0.90729 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.07 9.72 37.16 0.36 -0.71 16 2 C -0.09 -0.85 5.38 -27.89 -0.15 -1.00 16 3 C -0.06 -0.69 5.13 -104.63 -0.54 -1.23 16 4 C -0.12 -1.21 9.68 -39.58 -0.38 -1.59 16 5 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 6 C -0.13 -1.25 10.05 -39.58 -0.40 -1.65 16 7 C -0.10 -1.14 9.68 -39.58 -0.38 -1.52 16 8 C -0.06 -0.70 4.37 -104.62 -0.46 -1.16 16 9 C -0.10 -1.03 4.21 -29.03 -0.12 -1.15 16 10 C 0.53 7.45 7.05 -10.99 -0.08 7.37 16 11 O -0.53 -9.79 16.40 5.55 0.09 -9.70 16 12 N -0.63 -8.39 3.43 -171.57 -0.59 -8.98 16 13 C 0.12 1.20 6.46 -3.05 -0.02 1.18 16 14 C -0.13 -1.53 3.17 -89.27 -0.28 -1.81 16 15 H 0.09 1.03 8.14 -51.93 -0.42 0.60 16 16 C -0.10 -1.20 6.58 -25.78 -0.17 -1.37 16 17 C -0.14 -2.29 6.74 -23.33 -0.16 -2.45 16 18 C 0.20 3.70 3.45 -67.96 -0.23 3.46 16 19 H 0.06 1.07 8.09 -51.92 -0.42 0.65 16 20 N -0.72 -17.36 5.10 -53.45 -0.27 -17.63 16 21 C -0.24 -6.51 9.96 -15.06 -0.15 -6.66 16 22 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 24 N -0.93 -27.88 13.06 55.49 0.72 -27.16 16 25 Si 0.91 22.24 29.55 -169.99 -5.02 17.22 16 26 H -0.29 -7.14 7.11 56.52 0.40 -6.73 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.83 16 28 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 29 C -0.12 -1.86 2.23 -90.94 -0.20 -2.07 16 30 H 0.07 1.23 7.72 -51.93 -0.40 0.83 16 31 C 0.13 2.14 6.83 -4.12 -0.03 2.11 16 32 H 0.06 0.39 8.14 -51.93 -0.42 -0.03 16 33 H 0.06 0.38 8.14 -51.93 -0.42 -0.04 16 34 H 0.06 0.39 6.80 -51.93 -0.35 0.04 16 35 H 0.07 0.65 8.05 -51.93 -0.42 0.23 16 36 H 0.07 0.80 6.40 -51.93 -0.33 0.46 16 37 H 0.12 0.98 8.06 -52.49 -0.42 0.55 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 40 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 41 H 0.10 0.85 5.40 -51.93 -0.28 0.57 16 42 H 0.10 0.82 8.05 -51.93 -0.42 0.40 16 43 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 44 H 0.07 0.58 7.57 -51.93 -0.39 0.18 16 45 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 46 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.07 1.36 7.98 -51.93 -0.41 0.95 16 49 H 0.38 9.93 7.68 -40.82 -0.31 9.62 16 50 H 0.26 7.42 8.31 -40.82 -0.34 7.08 16 51 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 52 H 0.07 1.33 8.14 -51.93 -0.42 0.90 16 LS Contribution 410.49 15.07 6.19 6.19 Total: -1.00 -32.54 410.49 -11.55 -44.09 By element: Atomic # 1 Polarization: 17.00 SS G_CDS: -8.79 Total: 8.21 kcal Atomic # 6 Polarization: -8.36 SS G_CDS: -3.89 Total: -12.24 kcal Atomic # 7 Polarization: -53.63 SS G_CDS: -0.14 Total: -53.77 kcal Atomic # 8 Polarization: -9.79 SS G_CDS: 0.09 Total: -9.70 kcal Atomic # 14 Polarization: 22.24 SS G_CDS: -5.02 Total: 17.22 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.54 -11.55 -44.09 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026294786.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 51.362 kcal (2) G-P(sol) polarization free energy of solvation -32.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.554 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.090 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.272 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds