Wall clock time and date at job start Wed Apr 1 2020 02:59:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.50689 * 109.47457 * 2 1 4 4 C 1.38261 * 119.99975 * 265.20938 * 3 2 1 5 5 C 1.38216 * 119.99840 * 180.22936 * 4 3 2 6 6 C 1.38261 * 120.00226 * 359.81304 * 5 4 3 7 7 C 1.38214 * 119.99572 * 359.97438 * 6 5 4 8 8 C 1.38213 * 120.00315 * 84.99642 * 3 2 1 9 9 C 1.50706 * 119.99928 * 0.02562 * 8 3 2 10 10 C 1.50695 * 109.47145 * 84.72299 * 9 8 3 11 11 O 1.21284 * 119.99958 * 0.02562 * 10 9 8 12 12 N 1.34772 * 120.00268 * 180.02562 * 10 9 8 13 13 C 1.49624 * 126.07045 * 359.97290 * 12 10 9 14 14 C 1.51523 * 102.67120 * 154.23751 * 13 12 10 15 15 H 1.09004 * 111.12305 * 288.23811 * 14 13 12 16 16 C 1.51324 * 123.51516 * 151.34916 * 14 13 12 17 17 C 1.56343 * 101.94228 * 208.26512 * 16 14 13 18 18 C 1.55996 * 105.77082 * 25.55932 * 17 16 14 19 19 H 1.09009 * 110.64406 * 248.27493 * 18 17 16 20 20 N 1.46501 * 110.52789 * 125.58966 * 18 17 16 21 21 C 1.36928 * 120.00234 * 90.43171 * 20 18 17 22 22 H 1.08002 * 120.00117 * 359.97438 * 21 20 18 23 23 C 1.38816 * 120.00126 * 180.02562 * 21 20 18 24 24 N 1.31621 * 119.99644 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00215 * 179.97438 * 23 21 20 26 26 H 1.48496 * 109.47353 * 90.00004 * 25 23 21 27 27 H 1.48501 * 109.47103 * 209.99955 * 25 23 21 28 28 H 1.48496 * 109.47105 * 329.99758 * 25 23 21 29 29 C 1.49703 * 103.99082 * 6.95951 * 18 17 16 30 30 H 1.08995 * 108.54664 * 76.79930 * 29 18 17 31 31 C 1.49293 * 126.07500 * 179.97438 * 12 10 9 32 32 H 1.08998 * 109.47052 * 60.00409 * 1 2 3 33 33 H 1.08999 * 109.47287 * 180.02562 * 1 2 3 34 34 H 1.08992 * 109.47057 * 300.00138 * 1 2 3 35 35 H 1.09000 * 109.46882 * 239.99687 * 2 1 3 36 36 H 1.09003 * 109.46713 * 120.00236 * 2 1 3 37 37 H 1.07995 * 120.00057 * 0.06281 * 4 3 2 38 38 H 1.08000 * 119.99861 * 179.83492 * 5 4 3 39 39 H 1.07997 * 119.99870 * 180.02562 * 6 5 4 40 40 H 1.08001 * 119.99938 * 179.97438 * 7 6 5 41 41 H 1.09000 * 109.46882 * 324.72875 * 9 8 3 42 42 H 1.08993 * 109.47164 * 204.72645 * 9 8 3 43 43 H 1.09002 * 110.80542 * 272.58629 * 13 12 10 44 44 H 1.09004 * 110.80248 * 35.89264 * 13 12 10 45 45 H 1.08995 * 110.79393 * 90.13496 * 16 14 13 46 46 H 1.09001 * 111.03153 * 326.49581 * 16 14 13 47 47 H 1.09001 * 110.18372 * 266.48427 * 17 16 14 48 48 H 1.08993 * 110.18630 * 144.63481 * 17 16 14 49 49 H 0.97003 * 119.99361 * 270.43304 * 20 18 17 50 50 H 0.96999 * 119.99612 * 179.97438 * 24 23 21 51 51 H 1.08997 * 110.39275 * 292.42827 * 31 12 10 52 52 H 1.08999 * 110.39611 * 54.71856 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0324 1.4207 0.0000 4 6 2.3572 2.0391 -1.1932 5 6 2.8225 3.3406 -1.1928 6 6 2.9595 4.0254 0.0005 7 6 2.6307 3.4086 1.1929 8 6 2.1644 2.1071 1.1924 9 6 1.8064 1.4345 2.4926 10 6 2.9837 0.6323 2.9840 11 8 4.0124 0.6094 2.3419 12 7 2.8936 -0.0597 4.1370 13 6 1.6972 -0.1267 5.0330 14 6 1.8828 -1.4559 5.7365 15 1 1.7012 -2.2886 5.0570 16 6 1.3601 -1.7456 7.1267 17 6 2.3774 -2.8170 7.6380 18 6 3.6932 -2.5682 6.8379 19 1 3.8879 -3.3931 6.1524 20 7 4.8232 -2.3840 7.7519 21 6 5.5644 -3.4641 8.1506 22 1 5.3158 -4.4519 7.7916 23 6 6.6348 -3.2896 9.0170 24 7 6.9375 -2.0859 9.4549 25 14 7.6456 -4.7632 9.5615 26 1 8.7687 -4.9710 8.6125 27 1 8.1866 -4.5167 10.9223 28 1 6.7850 -5.9732 9.5826 29 6 3.4217 -1.3073 6.0780 30 1 3.5071 -0.4642 6.7635 31 6 3.9698 -0.8954 4.7471 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3634 -1.0276 0.0005 34 1 -0.3633 0.5138 0.8899 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 2.2498 1.5043 -2.1253 38 1 3.0787 3.8227 -2.1246 39 1 3.3227 5.0425 0.0007 40 1 2.7381 3.9434 2.1250 41 1 0.9551 0.7719 2.3366 42 1 1.5473 2.1907 3.2336 43 1 1.7035 0.6947 5.7495 44 1 0.7762 -0.1226 4.4500 45 1 0.3511 -2.1555 7.0830 46 1 1.3891 -0.8517 7.7497 47 1 1.9996 -3.8198 7.4385 48 1 2.5558 -2.6870 8.7054 49 1 5.0463 -1.4969 8.0746 50 1 7.6853 -1.9640 10.0606 51 1 4.1661 -1.7719 4.1296 52 1 4.8800 -0.3093 4.8739 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026294786.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:37 Heat of formation + Delta-G solvation = -10.415698 kcal Electronic energy + Delta-G solvation = -29947.320071 eV Core-core repulsion = 26103.903595 eV Total energy + Delta-G solvation = -3843.416476 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.78157 -40.76452 -39.38520 -36.76606 -35.21195 -35.06576 -33.56925 -32.67455 -31.11567 -30.32207 -29.79344 -28.33577 -26.93873 -24.88913 -24.78691 -24.27091 -22.86923 -21.57452 -21.35304 -20.49564 -20.12624 -19.11680 -17.88167 -17.77872 -17.15443 -17.09103 -16.59006 -16.15959 -15.88616 -15.71870 -15.60873 -15.36053 -14.86749 -14.67167 -14.42650 -14.34154 -14.01484 -13.97028 -13.90320 -13.60756 -13.18499 -13.13715 -13.01714 -12.97020 -12.80431 -12.65117 -12.62171 -12.44454 -12.17291 -12.14475 -12.11664 -11.83517 -11.69296 -11.57777 -11.55469 -11.35153 -11.01841 -10.98101 -10.83011 -9.73981 -9.68769 -9.47360 -8.99417 -7.94520 -5.22289 0.42160 0.52097 1.45977 1.47648 1.55600 1.62286 1.85472 2.55741 2.85594 3.00124 3.39897 3.60833 3.65351 3.76770 3.85874 3.99359 4.03450 4.04719 4.09204 4.27773 4.30452 4.31339 4.34548 4.44579 4.49129 4.51262 4.53911 4.60845 4.63166 4.69002 4.72900 4.73570 4.75786 4.77811 4.95036 4.99690 5.02598 5.06660 5.09287 5.17114 5.20886 5.24146 5.25435 5.38561 5.41110 5.48286 5.54724 5.59767 5.63377 5.64305 5.75360 6.15158 6.28037 6.51233 7.13963 7.33755 8.10679 8.32690 9.29045 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.017243 B = 0.002290 C = 0.002172 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1623.421836 B =12221.899698 C =12890.562633 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.088 4.088 3 C -0.078 4.078 4 C -0.133 4.133 5 C -0.125 4.125 6 C -0.136 4.136 7 C -0.121 4.121 8 C -0.082 4.082 9 C -0.090 4.090 10 C 0.525 3.475 11 O -0.585 6.585 12 N -0.624 5.624 13 C 0.118 3.882 14 C -0.104 4.104 15 H 0.094 0.906 16 C -0.085 4.085 17 C -0.137 4.137 18 C 0.188 3.812 19 H 0.045 0.955 20 N -0.734 5.734 21 C -0.235 4.235 22 H 0.075 0.925 23 C -0.078 4.078 24 N -0.971 5.971 25 Si 0.969 3.031 26 H -0.291 1.291 27 H -0.296 1.296 28 H -0.267 1.267 29 C -0.124 4.124 30 H 0.063 0.937 31 C 0.138 3.862 32 H 0.060 0.940 33 H 0.068 0.932 34 H 0.063 0.937 35 H 0.071 0.929 36 H 0.054 0.946 37 H 0.134 0.866 38 H 0.141 0.859 39 H 0.138 0.862 40 H 0.128 0.872 41 H 0.127 0.873 42 H 0.125 0.875 43 H 0.086 0.914 44 H 0.117 0.883 45 H 0.094 0.906 46 H 0.071 0.929 47 H 0.066 0.934 48 H 0.047 0.953 49 H 0.371 0.629 50 H 0.249 0.751 51 H 0.056 0.944 52 H 0.042 0.958 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.120 9.401 -18.677 29.720 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.125 4.125 3 C -0.078 4.078 4 C -0.150 4.150 5 C -0.143 4.143 6 C -0.154 4.154 7 C -0.139 4.139 8 C -0.082 4.082 9 C -0.129 4.129 10 C 0.316 3.684 11 O -0.465 6.465 12 N -0.358 5.358 13 C -0.002 4.002 14 C -0.123 4.123 15 H 0.112 0.888 16 C -0.123 4.123 17 C -0.178 4.178 18 C 0.079 3.921 19 H 0.063 0.937 20 N -0.374 5.374 21 C -0.367 4.367 22 H 0.093 0.907 23 C -0.270 4.270 24 N -0.622 5.622 25 Si 0.798 3.202 26 H -0.219 1.219 27 H -0.223 1.223 28 H -0.192 1.192 29 C -0.144 4.144 30 H 0.081 0.919 31 C 0.016 3.984 32 H 0.079 0.921 33 H 0.087 0.913 34 H 0.082 0.918 35 H 0.090 0.910 36 H 0.073 0.927 37 H 0.152 0.848 38 H 0.159 0.841 39 H 0.156 0.844 40 H 0.146 0.854 41 H 0.145 0.855 42 H 0.143 0.857 43 H 0.104 0.896 44 H 0.135 0.865 45 H 0.113 0.887 46 H 0.089 0.911 47 H 0.085 0.915 48 H 0.066 0.934 49 H 0.203 0.797 50 H 0.058 0.942 51 H 0.074 0.926 52 H 0.060 0.940 Dipole moment (debyes) X Y Z Total from point charges -20.520 9.254 -19.078 29.508 hybrid contribution 1.795 -0.413 0.807 2.011 sum -18.725 8.841 -18.272 27.616 Atomic orbital electron populations 1.21739 0.92717 1.02660 1.02682 1.20567 0.97595 0.91975 1.02365 1.19941 0.98559 0.96312 0.92974 1.21267 1.00222 0.95717 0.97838 1.21431 0.99093 0.94838 0.98911 1.21374 1.00580 1.00974 0.92496 1.21255 0.98739 0.94846 0.99056 1.19354 1.00742 0.94412 0.93724 1.20743 0.96132 1.00178 0.95842 1.20870 0.89817 0.78856 0.78900 1.90718 1.33623 1.64936 1.57218 1.49959 1.15617 1.48029 1.22240 1.22029 0.87891 0.97191 0.93135 1.22603 0.93775 0.98133 0.97836 0.88771 1.21715 0.98710 0.98733 0.93101 1.23585 0.95184 0.99303 0.99707 1.20230 0.87536 0.94355 0.89986 0.93687 1.42700 1.33341 1.06742 1.54570 1.19624 1.07237 0.89221 1.20647 0.90669 1.25529 1.00942 0.99000 1.01529 1.69815 1.31693 1.22068 1.38616 0.85198 0.78802 0.79412 0.76739 1.21868 1.22298 1.19214 1.21950 0.98321 0.99314 0.94824 0.91866 1.20699 0.90048 0.94053 0.93648 0.92072 0.91256 0.91790 0.91002 0.92684 0.84767 0.84135 0.84409 0.85374 0.85525 0.85746 0.89565 0.86496 0.88742 0.91068 0.91498 0.93444 0.79674 0.94177 0.92568 0.93985 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.70 9.72 71.98 0.70 -1.00 16 2 C -0.09 -1.57 5.38 29.85 0.16 -1.41 16 3 C -0.08 -1.63 5.13 -19.87 -0.10 -1.73 16 4 C -0.13 -2.55 9.68 22.27 0.22 -2.33 16 5 C -0.12 -2.25 10.05 22.27 0.22 -2.03 16 6 C -0.14 -2.57 10.05 22.27 0.22 -2.35 16 7 C -0.12 -2.52 9.68 22.27 0.22 -2.30 16 8 C -0.08 -1.76 4.37 -19.86 -0.09 -1.84 16 9 C -0.09 -1.61 4.21 29.10 0.12 -1.49 16 10 C 0.53 14.36 7.05 87.66 0.62 14.98 16 11 O -0.58 -22.05 16.40 -3.04 -0.05 -22.10 16 12 N -0.62 -15.93 3.43 -815.10 -2.79 -18.73 16 13 C 0.12 1.98 6.46 85.29 0.55 2.53 16 14 C -0.10 -2.15 3.17 -9.92 -0.03 -2.18 16 15 H 0.09 1.88 8.14 -2.39 -0.02 1.86 16 16 C -0.08 -1.74 6.58 31.21 0.21 -1.54 16 17 C -0.14 -4.21 6.74 32.80 0.22 -3.99 16 18 C 0.19 7.06 3.45 44.97 0.16 7.22 16 19 H 0.04 1.76 8.09 -2.38 -0.02 1.74 16 20 N -0.73 -36.61 5.10 -323.02 -1.65 -38.25 16 21 C -0.24 -13.03 9.96 84.04 0.84 -12.19 16 22 H 0.08 4.00 7.83 -2.91 -0.02 3.98 16 23 C -0.08 -4.51 5.50 84.86 0.47 -4.05 16 24 N -0.97 -60.08 13.06 21.65 0.28 -59.80 16 25 Si 0.97 46.64 29.55 68.60 2.03 48.67 16 26 H -0.29 -13.95 7.11 99.48 0.71 -13.25 16 27 H -0.30 -14.36 7.11 99.48 0.71 -13.66 16 28 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 29 C -0.12 -3.86 2.23 -11.00 -0.02 -3.88 16 30 H 0.06 2.12 7.72 -2.39 -0.02 2.10 16 31 C 0.14 4.50 6.83 84.78 0.58 5.08 16 32 H 0.06 0.70 8.14 -2.39 -0.02 0.68 16 33 H 0.07 0.70 8.14 -2.39 -0.02 0.68 16 34 H 0.06 0.67 6.80 -2.39 -0.02 0.65 16 35 H 0.07 1.24 8.05 -2.39 -0.02 1.22 16 36 H 0.05 1.16 6.40 -2.39 -0.02 1.15 16 37 H 0.13 2.03 8.06 -2.91 -0.02 2.00 16 38 H 0.14 1.80 8.06 -2.91 -0.02 1.77 16 39 H 0.14 1.96 8.06 -2.91 -0.02 1.94 16 40 H 0.13 2.29 8.06 -2.91 -0.02 2.27 16 41 H 0.13 1.62 5.40 -2.39 -0.01 1.61 16 42 H 0.12 1.60 8.05 -2.39 -0.02 1.59 16 43 H 0.09 1.32 8.14 -2.39 -0.02 1.30 16 44 H 0.12 1.10 7.57 -2.39 -0.02 1.08 16 45 H 0.09 1.42 8.14 -2.39 -0.02 1.40 16 46 H 0.07 1.46 8.14 -2.39 -0.02 1.44 16 47 H 0.07 1.88 8.14 -2.39 -0.02 1.86 16 48 H 0.05 1.72 7.98 -2.39 -0.02 1.70 16 49 H 0.37 20.12 7.68 -92.71 -0.71 19.41 16 50 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 51 H 0.06 1.93 8.14 -2.39 -0.02 1.91 16 52 H 0.04 1.61 8.14 -2.39 -0.02 1.59 16 Total: -1.00 -75.03 410.49 3.26 -71.77 By element: Atomic # 1 Polarization: 32.74 SS G_CDS: 0.19 Total: 32.93 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 5.25 Total: -14.49 kcal Atomic # 7 Polarization: -112.62 SS G_CDS: -4.16 Total: -116.78 kcal Atomic # 8 Polarization: -22.05 SS G_CDS: -0.05 Total: -22.10 kcal Atomic # 14 Polarization: 46.64 SS G_CDS: 2.03 Total: 48.67 kcal Total: -75.03 3.26 -71.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026294786.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.356 kcal (2) G-P(sol) polarization free energy of solvation -75.031 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.675 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.259 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.772 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.416 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds