Wall clock time and date at job start Wed Apr 1 2020 02:59:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46984 * 2 1 4 4 C 1.38257 * 119.99946 * 264.97720 * 3 2 1 5 5 C 1.38220 * 119.99893 * 180.02562 * 4 3 2 6 6 C 1.38256 * 119.99925 * 359.97438 * 5 4 3 7 7 C 1.38219 * 120.00105 * 359.80658 * 6 5 4 8 8 C 1.38210 * 120.00075 * 85.00345 * 3 2 1 9 9 C 1.50705 * 119.99970 * 359.97399 * 8 3 2 10 10 C 1.50697 * 109.46723 * 85.00178 * 9 8 3 11 11 O 1.21274 * 120.00315 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99685 * 179.97438 * 10 9 8 13 13 C 1.48342 * 128.19290 * 359.68385 * 12 10 9 14 14 C 1.54910 * 104.07089 * 138.26259 * 13 12 10 15 15 H 1.08996 * 112.55018 * 263.88789 * 14 13 12 16 16 C 1.53564 * 108.94198 * 139.48545 * 14 13 12 17 17 C 1.53960 * 106.02807 * 229.12173 * 16 14 13 18 18 C 1.53957 * 104.88947 * 29.56178 * 17 16 14 19 19 H 1.09002 * 110.19588 * 211.26462 * 18 17 16 20 20 N 1.46499 * 110.13621 * 89.57906 * 18 17 16 21 21 C 1.36943 * 119.99890 * 138.29032 * 20 18 17 22 22 H 1.07998 * 119.99396 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00250 * 179.97438 * 21 20 18 24 24 N 1.31614 * 120.00066 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99732 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47135 * 90.00409 * 25 23 21 27 27 H 1.48497 * 109.46998 * 210.00364 * 25 23 21 28 28 H 1.48501 * 109.47314 * 330.00455 * 25 23 21 29 29 C 1.53560 * 106.03194 * 330.43704 * 18 17 16 30 30 H 1.08998 * 111.65912 * 254.94158 * 29 18 17 31 31 C 1.48352 * 128.19200 * 179.97438 * 12 10 9 32 32 H 1.08997 * 109.47090 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46959 * 299.99979 * 1 2 3 34 34 H 1.09004 * 109.47135 * 60.00039 * 1 2 3 35 35 H 1.09000 * 109.46959 * 240.00021 * 2 1 3 36 36 H 1.08995 * 109.46938 * 119.99860 * 2 1 3 37 37 H 1.07995 * 120.00195 * 359.97438 * 4 3 2 38 38 H 1.07998 * 120.00074 * 179.97438 * 5 4 3 39 39 H 1.07998 * 120.00305 * 179.97438 * 6 5 4 40 40 H 1.07994 * 120.00192 * 180.23954 * 7 6 5 41 41 H 1.09000 * 109.46854 * 325.00251 * 9 8 3 42 42 H 1.09000 * 109.47224 * 205.00627 * 9 8 3 43 43 H 1.09005 * 110.47174 * 256.99500 * 13 12 10 44 44 H 1.08995 * 110.47278 * 19.59679 * 13 12 10 45 45 H 1.09002 * 110.14092 * 109.98539 * 16 14 13 46 46 H 1.08995 * 110.19720 * 348.29385 * 16 14 13 47 47 H 1.09002 * 110.35743 * 270.70596 * 17 16 14 48 48 H 1.09001 * 110.44359 * 148.46309 * 17 16 14 49 49 H 0.97000 * 120.00589 * 318.28282 * 20 18 17 50 50 H 0.97001 * 119.99799 * 179.97438 * 24 23 21 51 51 H 1.08995 * 110.46886 * 340.40359 * 31 12 10 52 52 H 1.09003 * 110.46867 * 103.00519 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3616 2.0376 -1.1927 5 6 2.8228 3.3406 -1.1927 6 6 2.9544 4.0273 0.0001 7 6 2.6209 3.4122 1.1921 8 6 2.1644 2.1071 1.1924 9 6 1.8055 1.4348 2.4925 10 6 2.9845 0.6374 2.9877 11 8 4.0147 0.6174 2.3482 12 7 2.8942 -0.0528 4.1419 13 6 1.7366 -0.1496 5.0646 14 6 1.7013 -1.6446 5.4689 15 1 1.0043 -2.2248 4.8642 16 6 1.3753 -1.7486 6.9659 17 6 2.4242 -2.7037 7.5641 18 6 3.6747 -2.5184 6.6854 19 1 4.2391 -3.4494 6.6329 20 7 4.5168 -1.4483 7.2258 21 6 5.8774 -1.5994 7.2609 22 1 6.3295 -2.5075 6.8905 23 6 6.6754 -0.5853 7.7725 24 7 7.9830 -0.7307 7.8066 25 14 5.8932 0.9857 8.4124 26 1 5.5896 0.8343 9.8582 27 1 6.8321 2.1200 8.2200 28 1 4.6362 1.2519 7.6678 29 6 3.1599 -2.1329 5.2909 30 1 3.2382 -2.9634 4.5894 31 6 3.9309 -0.8906 4.7932 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 2.2592 1.5011 -2.1244 38 1 3.0804 3.8223 -2.1243 39 1 3.3151 5.0452 0.0002 40 1 2.7200 3.9498 2.1234 41 1 0.9569 0.7691 2.3351 42 1 1.5419 2.1910 3.2320 43 1 1.8931 0.4808 5.9400 44 1 0.8162 0.1298 4.5521 45 1 0.3740 -2.1564 7.1045 46 1 1.4491 -0.7680 7.4361 47 1 2.0727 -3.7341 7.5110 48 1 2.6425 -2.4311 8.5966 49 1 4.1107 -0.6328 7.5587 50 1 8.5407 -0.0219 8.1638 51 1 4.6953 -1.1801 4.0722 52 1 4.3790 -0.3587 5.6324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026294787.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:42 Heat of formation + Delta-G solvation = 5.548376 kcal Electronic energy + Delta-G solvation = -30908.703116 eV Core-core repulsion = 27065.978895 eV Total energy + Delta-G solvation = -3842.724222 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.44164 -39.66462 -38.09446 -35.04655 -34.41384 -33.48897 -32.62947 -31.21218 -29.78629 -29.41325 -28.63086 -27.42997 -25.30503 -24.07267 -23.55183 -22.85861 -21.98816 -20.67345 -19.93479 -18.84204 -18.70407 -17.80180 -16.93573 -16.49844 -16.21775 -15.60943 -15.38460 -15.26810 -14.87886 -14.35374 -14.13283 -13.96112 -13.82910 -13.60049 -13.19354 -13.15294 -13.06848 -12.88950 -12.78152 -12.50155 -12.18805 -11.97564 -11.88929 -11.78879 -11.71590 -11.42585 -11.09228 -10.94767 -10.91640 -10.82493 -10.75611 -10.56934 -10.36974 -10.28355 -10.17708 -10.00873 -9.61297 -9.55787 -9.04919 -8.82158 -8.61169 -8.33724 -7.27167 -5.82092 -3.18991 1.29444 1.37138 2.89069 3.23661 3.31234 3.33679 3.42028 3.76252 4.52841 4.54346 4.59914 4.64965 4.68553 4.81688 4.83738 4.91382 5.02779 5.04019 5.13305 5.21576 5.30105 5.30934 5.36137 5.41976 5.46642 5.48206 5.52577 5.55054 5.64777 5.74151 5.76610 5.78349 5.89180 5.92392 5.94340 5.97969 6.04154 6.06102 6.11737 6.18359 6.25280 6.41943 6.42718 6.45845 6.48664 6.57528 6.61344 6.74306 6.78639 6.97309 7.02304 7.90181 7.94691 8.37145 8.45904 9.13856 9.85604 10.03776 11.35991 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.003383 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.692524 B = 8275.412739 C = 9585.499913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.089 4.089 3 C -0.064 4.064 4 C -0.119 4.119 5 C -0.120 4.120 6 C -0.124 4.124 7 C -0.105 4.105 8 C -0.059 4.059 9 C -0.103 4.103 10 C 0.530 3.470 11 O -0.533 6.533 12 N -0.626 5.626 13 C 0.106 3.894 14 C -0.100 4.100 15 H 0.080 0.920 16 C -0.115 4.115 17 C -0.136 4.136 18 C 0.183 3.817 19 H 0.072 0.928 20 N -0.735 5.735 21 C -0.251 4.251 22 H 0.093 0.907 23 C 0.011 3.989 24 N -0.928 5.928 25 Si 0.878 3.122 26 H -0.283 1.283 27 H -0.291 1.291 28 H -0.278 1.278 29 C -0.123 4.123 30 H 0.075 0.925 31 C 0.105 3.895 32 H 0.058 0.942 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.072 0.928 37 H 0.119 0.881 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.101 0.899 42 H 0.097 0.903 43 H 0.073 0.927 44 H 0.070 0.930 45 H 0.059 0.941 46 H 0.063 0.937 47 H 0.063 0.937 48 H 0.071 0.929 49 H 0.361 0.639 50 H 0.260 0.740 51 H 0.071 0.929 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.395 3.446 -12.584 24.211 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.126 4.126 3 C -0.064 4.064 4 C -0.137 4.137 5 C -0.138 4.138 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.059 4.059 9 C -0.142 4.142 10 C 0.318 3.682 11 O -0.410 6.410 12 N -0.361 5.361 13 C -0.018 4.018 14 C -0.119 4.119 15 H 0.099 0.901 16 C -0.153 4.153 17 C -0.175 4.175 18 C 0.072 3.928 19 H 0.090 0.910 20 N -0.377 5.377 21 C -0.380 4.380 22 H 0.110 0.890 23 C -0.186 4.186 24 N -0.575 5.575 25 Si 0.709 3.291 26 H -0.210 1.210 27 H -0.217 1.217 28 H -0.204 1.204 29 C -0.145 4.145 30 H 0.094 0.906 31 C -0.016 4.016 32 H 0.077 0.923 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.091 0.909 37 H 0.137 0.863 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.119 0.881 42 H 0.115 0.885 43 H 0.091 0.909 44 H 0.088 0.912 45 H 0.078 0.922 46 H 0.082 0.918 47 H 0.081 0.919 48 H 0.090 0.910 49 H 0.195 0.805 50 H 0.071 0.929 51 H 0.089 0.911 52 H 0.135 0.865 Dipole moment (debyes) X Y Z Total from point charges -19.535 3.420 -13.031 23.731 hybrid contribution -0.391 1.273 0.525 1.431 sum -19.926 4.694 -12.506 23.989 Atomic orbital electron populations 1.21765 0.94769 1.01740 1.02036 1.20563 0.95850 0.92945 1.03240 1.19652 0.98468 0.95665 0.92613 1.20956 1.00298 0.95197 0.97266 1.21082 0.99925 0.94852 0.97960 1.21053 1.00668 0.99985 0.92544 1.20990 0.98570 0.94522 0.98208 1.19134 0.99755 0.93921 0.93120 1.20726 0.97836 0.99912 0.95754 1.19961 0.89237 0.79472 0.79514 1.90737 1.31206 1.63060 1.55995 1.49336 1.16837 1.48779 1.21101 1.22754 0.88853 0.96902 0.93257 1.22623 0.97692 0.94815 0.96770 0.90145 1.22134 0.98747 1.00249 0.94150 1.22632 0.95837 0.98651 1.00363 1.20687 0.90460 0.92461 0.89233 0.91006 1.42888 1.04126 1.16848 1.73820 1.19106 0.80414 1.03122 1.35395 0.88951 1.24661 0.95139 0.97872 1.00922 1.69681 1.02709 1.33867 1.51240 0.86668 0.78499 0.84881 0.79069 1.21010 1.21685 1.20413 1.23200 0.93359 0.97612 1.00341 0.90624 1.23078 0.89722 0.90720 0.98108 0.92305 0.92597 0.92525 0.91004 0.90929 0.86284 0.86302 0.86221 0.86268 0.88120 0.88485 0.90882 0.91185 0.92180 0.91797 0.91869 0.91046 0.80511 0.92947 0.91063 0.86532 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.21 9.72 37.16 0.36 -0.85 16 2 C -0.09 -0.96 5.38 -27.88 -0.15 -1.11 16 3 C -0.06 -0.79 5.13 -104.63 -0.54 -1.33 16 4 C -0.12 -1.36 9.68 -39.58 -0.38 -1.74 16 5 C -0.12 -1.31 10.05 -39.58 -0.40 -1.71 16 6 C -0.12 -1.43 10.05 -39.58 -0.40 -1.83 16 7 C -0.10 -1.33 9.68 -39.58 -0.38 -1.71 16 8 C -0.06 -0.77 4.37 -104.62 -0.46 -1.23 16 9 C -0.10 -1.25 4.14 -29.03 -0.12 -1.37 16 10 C 0.53 8.85 7.12 -10.98 -0.08 8.77 16 11 O -0.53 -11.29 16.32 5.56 0.09 -11.19 16 12 N -0.63 -10.11 3.31 -168.61 -0.56 -10.66 16 13 C 0.11 1.32 6.46 -2.02 -0.01 1.30 16 14 C -0.10 -1.22 3.95 -88.35 -0.35 -1.57 16 15 H 0.08 0.86 8.14 -51.93 -0.42 0.44 16 16 C -0.11 -1.35 6.37 -25.94 -0.17 -1.51 16 17 C -0.14 -1.88 6.50 -25.73 -0.17 -2.05 16 18 C 0.18 3.16 3.54 -67.14 -0.24 2.92 16 19 H 0.07 1.31 7.91 -51.93 -0.41 0.90 16 20 N -0.74 -15.82 2.69 -52.66 -0.14 -15.97 16 21 C -0.25 -6.67 9.92 -15.06 -0.15 -6.82 16 22 H 0.09 2.66 7.97 -52.49 -0.42 2.25 16 23 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 24 N -0.93 -28.69 13.97 55.49 0.78 -27.92 16 25 Si 0.88 21.57 27.73 -169.99 -4.71 16.85 16 26 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 27 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 28 H -0.28 -6.35 6.52 56.52 0.37 -5.98 16 29 C -0.12 -1.92 3.93 -88.60 -0.35 -2.27 16 30 H 0.08 1.15 8.14 -51.93 -0.42 0.72 16 31 C 0.10 1.98 6.27 -2.26 -0.01 1.97 16 32 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 33 H 0.05 0.45 6.80 -51.93 -0.35 0.09 16 34 H 0.06 0.44 8.14 -51.93 -0.42 0.02 16 35 H 0.07 0.73 8.05 -51.93 -0.42 0.31 16 36 H 0.07 0.91 6.42 -51.93 -0.33 0.58 16 37 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 38 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 39 H 0.12 1.11 8.06 -52.49 -0.42 0.68 16 40 H 0.12 1.36 8.06 -52.49 -0.42 0.94 16 41 H 0.10 1.01 5.47 -51.93 -0.28 0.73 16 42 H 0.10 1.01 8.05 -51.93 -0.42 0.59 16 43 H 0.07 0.94 7.22 -51.93 -0.37 0.57 16 44 H 0.07 0.66 7.32 -51.93 -0.38 0.28 16 45 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 46 H 0.06 0.77 7.13 -51.93 -0.37 0.40 16 47 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 48 H 0.07 1.06 8.09 -51.93 -0.42 0.64 16 49 H 0.36 7.73 5.49 -40.82 -0.22 7.51 16 50 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 51 H 0.07 1.53 7.88 -51.93 -0.41 1.12 16 52 H 0.12 2.56 5.19 -51.93 -0.27 2.29 16 LS Contribution 400.89 15.07 6.04 6.04 Total: -1.00 -32.99 400.89 -11.07 -44.06 By element: Atomic # 1 Polarization: 19.22 SS G_CDS: -8.48 Total: 10.74 kcal Atomic # 6 Polarization: -7.87 SS G_CDS: -4.08 Total: -11.95 kcal Atomic # 7 Polarization: -54.62 SS G_CDS: 0.08 Total: -54.55 kcal Atomic # 8 Polarization: -11.29 SS G_CDS: 0.09 Total: -11.19 kcal Atomic # 14 Polarization: 21.57 SS G_CDS: -4.71 Total: 16.85 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -32.99 -11.07 -44.06 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026294787.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.604 kcal (2) G-P(sol) polarization free energy of solvation -32.986 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.618 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.069 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.056 kcal (6) G-S(sol) free energy of system = (1) + (5) 5.548 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds