Wall clock time and date at job start Wed Apr 1 2020 02:59:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50700 * 109.46984 * 2 1 4 4 C 1.38257 * 119.99946 * 264.97720 * 3 2 1 5 5 C 1.38220 * 119.99893 * 180.02562 * 4 3 2 6 6 C 1.38256 * 119.99925 * 359.97438 * 5 4 3 7 7 C 1.38219 * 120.00105 * 359.80658 * 6 5 4 8 8 C 1.38210 * 120.00075 * 85.00345 * 3 2 1 9 9 C 1.50705 * 119.99970 * 359.97399 * 8 3 2 10 10 C 1.50697 * 109.46723 * 85.00178 * 9 8 3 11 11 O 1.21274 * 120.00315 * 0.02562 * 10 9 8 12 12 N 1.34784 * 119.99685 * 179.97438 * 10 9 8 13 13 C 1.48342 * 128.19290 * 359.68385 * 12 10 9 14 14 C 1.54910 * 104.07089 * 138.26259 * 13 12 10 15 15 H 1.08996 * 112.55018 * 263.88789 * 14 13 12 16 16 C 1.53564 * 108.94198 * 139.48545 * 14 13 12 17 17 C 1.53960 * 106.02807 * 229.12173 * 16 14 13 18 18 C 1.53957 * 104.88947 * 29.56178 * 17 16 14 19 19 H 1.09002 * 110.19588 * 211.26462 * 18 17 16 20 20 N 1.46499 * 110.13621 * 89.57906 * 18 17 16 21 21 C 1.36943 * 119.99890 * 138.29032 * 20 18 17 22 22 H 1.07998 * 119.99396 * 359.97438 * 21 20 18 23 23 C 1.38809 * 120.00250 * 179.97438 * 21 20 18 24 24 N 1.31614 * 120.00066 * 179.97438 * 23 21 20 25 25 Si 1.86802 * 119.99732 * 359.97438 * 23 21 20 26 26 H 1.48504 * 109.47135 * 90.00409 * 25 23 21 27 27 H 1.48497 * 109.46998 * 210.00364 * 25 23 21 28 28 H 1.48501 * 109.47314 * 330.00455 * 25 23 21 29 29 C 1.53560 * 106.03194 * 330.43704 * 18 17 16 30 30 H 1.08998 * 111.65912 * 254.94158 * 29 18 17 31 31 C 1.48352 * 128.19200 * 179.97438 * 12 10 9 32 32 H 1.08997 * 109.47090 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46959 * 299.99979 * 1 2 3 34 34 H 1.09004 * 109.47135 * 60.00039 * 1 2 3 35 35 H 1.09000 * 109.46959 * 240.00021 * 2 1 3 36 36 H 1.08995 * 109.46938 * 119.99860 * 2 1 3 37 37 H 1.07995 * 120.00195 * 359.97438 * 4 3 2 38 38 H 1.07998 * 120.00074 * 179.97438 * 5 4 3 39 39 H 1.07998 * 120.00305 * 179.97438 * 6 5 4 40 40 H 1.07994 * 120.00192 * 180.23954 * 7 6 5 41 41 H 1.09000 * 109.46854 * 325.00251 * 9 8 3 42 42 H 1.09000 * 109.47224 * 205.00627 * 9 8 3 43 43 H 1.09005 * 110.47174 * 256.99500 * 13 12 10 44 44 H 1.08995 * 110.47278 * 19.59679 * 13 12 10 45 45 H 1.09002 * 110.14092 * 109.98539 * 16 14 13 46 46 H 1.08995 * 110.19720 * 348.29385 * 16 14 13 47 47 H 1.09002 * 110.35743 * 270.70596 * 17 16 14 48 48 H 1.09001 * 110.44359 * 148.46309 * 17 16 14 49 49 H 0.97000 * 120.00589 * 318.28282 * 20 18 17 50 50 H 0.97001 * 119.99799 * 179.97438 * 24 23 21 51 51 H 1.08995 * 110.46886 * 340.40359 * 31 12 10 52 52 H 1.09003 * 110.46867 * 103.00519 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.3616 2.0376 -1.1927 5 6 2.8228 3.3406 -1.1927 6 6 2.9544 4.0273 0.0001 7 6 2.6209 3.4122 1.1921 8 6 2.1644 2.1071 1.1924 9 6 1.8055 1.4348 2.4925 10 6 2.9845 0.6374 2.9877 11 8 4.0147 0.6174 2.3482 12 7 2.8942 -0.0528 4.1419 13 6 1.7366 -0.1496 5.0646 14 6 1.7013 -1.6446 5.4689 15 1 1.0043 -2.2248 4.8642 16 6 1.3753 -1.7486 6.9659 17 6 2.4242 -2.7037 7.5641 18 6 3.6747 -2.5184 6.6854 19 1 4.2391 -3.4494 6.6329 20 7 4.5168 -1.4483 7.2258 21 6 5.8774 -1.5994 7.2609 22 1 6.3295 -2.5075 6.8905 23 6 6.6754 -0.5853 7.7725 24 7 7.9830 -0.7307 7.8066 25 14 5.8932 0.9857 8.4124 26 1 5.5896 0.8343 9.8582 27 1 6.8321 2.1200 8.2200 28 1 4.6362 1.2519 7.6678 29 6 3.1599 -2.1329 5.2909 30 1 3.2382 -2.9634 4.5894 31 6 3.9309 -0.8906 4.7932 32 1 -0.3633 -1.0276 -0.0005 33 1 -0.3633 0.5138 0.8900 34 1 -0.3633 0.5138 -0.8900 35 1 1.8934 -0.5138 -0.8900 36 1 1.8933 -0.5138 0.8900 37 1 2.2592 1.5011 -2.1244 38 1 3.0804 3.8223 -2.1243 39 1 3.3151 5.0452 0.0002 40 1 2.7200 3.9498 2.1234 41 1 0.9569 0.7691 2.3351 42 1 1.5419 2.1910 3.2320 43 1 1.8931 0.4808 5.9400 44 1 0.8162 0.1298 4.5521 45 1 0.3740 -2.1564 7.1045 46 1 1.4491 -0.7680 7.4361 47 1 2.0727 -3.7341 7.5110 48 1 2.6425 -2.4311 8.5966 49 1 4.1107 -0.6328 7.5587 50 1 8.5407 -0.0219 8.1638 51 1 4.6953 -1.1801 4.0722 52 1 4.3790 -0.3587 5.6324 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026294787.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:41 Heat of formation + Delta-G solvation = -12.838325 kcal Electronic energy + Delta-G solvation = -30909.500424 eV Core-core repulsion = 27065.978895 eV Total energy + Delta-G solvation = -3843.521529 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.62195 -40.69320 -39.33664 -36.57064 -35.22827 -35.09536 -33.57274 -33.08009 -30.92102 -30.33420 -30.00957 -28.41575 -26.68008 -25.12120 -24.71966 -24.45671 -22.89874 -21.55442 -21.17821 -20.16147 -20.03618 -19.58756 -18.16929 -17.42156 -17.25076 -16.87819 -16.71372 -16.49310 -16.01117 -15.80737 -15.57658 -15.17736 -14.75824 -14.69536 -14.43152 -14.36781 -14.20543 -14.00058 -13.92862 -13.77926 -13.38591 -13.16463 -13.02698 -12.92435 -12.81553 -12.65901 -12.36126 -12.29617 -12.14268 -12.07454 -11.88174 -11.71255 -11.59961 -11.57947 -11.49387 -11.37546 -11.34219 -11.01167 -10.85556 -9.79698 -9.71295 -9.49513 -9.15844 -8.03382 -5.35184 0.40107 0.49265 1.31101 1.36460 1.42703 1.63223 2.04287 2.45249 2.85528 3.27862 3.44230 3.52880 3.62892 3.70609 3.83098 3.94900 4.00613 4.04018 4.09253 4.27755 4.30559 4.35202 4.40303 4.45419 4.49216 4.50608 4.56140 4.62014 4.63789 4.70810 4.73121 4.75911 4.84214 4.88296 5.01187 5.05385 5.07491 5.08609 5.14811 5.19414 5.21254 5.25998 5.39205 5.41297 5.46593 5.48511 5.57163 5.60354 5.63767 5.73011 5.79706 6.12871 6.21647 6.67242 7.07900 7.18268 7.84140 8.01837 9.18641 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012527 B = 0.003383 C = 0.002920 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2234.692524 B = 8275.412739 C = 9585.499913 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.087 4.087 3 C -0.079 4.079 4 C -0.131 4.131 5 C -0.124 4.124 6 C -0.136 4.136 7 C -0.124 4.124 8 C -0.081 4.081 9 C -0.089 4.089 10 C 0.524 3.476 11 O -0.591 6.591 12 N -0.627 5.627 13 C 0.101 3.899 14 C -0.087 4.087 15 H 0.112 0.888 16 C -0.107 4.107 17 C -0.128 4.128 18 C 0.171 3.829 19 H 0.051 0.949 20 N -0.734 5.734 21 C -0.222 4.222 22 H 0.056 0.944 23 C -0.063 4.063 24 N -0.985 5.985 25 Si 0.946 3.054 26 H -0.272 1.272 27 H -0.306 1.306 28 H -0.251 1.251 29 C -0.116 4.116 30 H 0.078 0.922 31 C 0.106 3.894 32 H 0.070 0.930 33 H 0.062 0.938 34 H 0.061 0.939 35 H 0.072 0.928 36 H 0.052 0.948 37 H 0.137 0.863 38 H 0.143 0.857 39 H 0.138 0.862 40 H 0.125 0.875 41 H 0.128 0.872 42 H 0.120 0.880 43 H 0.073 0.927 44 H 0.114 0.886 45 H 0.097 0.903 46 H 0.064 0.936 47 H 0.086 0.914 48 H 0.062 0.938 49 H 0.366 0.634 50 H 0.255 0.745 51 H 0.026 0.974 52 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.529 4.171 -12.866 28.891 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.124 4.124 3 C -0.079 4.079 4 C -0.149 4.149 5 C -0.142 4.142 6 C -0.154 4.154 7 C -0.142 4.142 8 C -0.081 4.081 9 C -0.128 4.128 10 C 0.314 3.686 11 O -0.472 6.472 12 N -0.360 5.360 13 C -0.021 4.021 14 C -0.106 4.106 15 H 0.130 0.870 16 C -0.145 4.145 17 C -0.166 4.166 18 C 0.062 3.938 19 H 0.069 0.931 20 N -0.376 5.376 21 C -0.353 4.353 22 H 0.074 0.926 23 C -0.254 4.254 24 N -0.636 5.636 25 Si 0.774 3.226 26 H -0.198 1.198 27 H -0.233 1.233 28 H -0.175 1.175 29 C -0.138 4.138 30 H 0.097 0.903 31 C -0.017 4.017 32 H 0.089 0.911 33 H 0.081 0.919 34 H 0.081 0.919 35 H 0.091 0.909 36 H 0.071 0.929 37 H 0.155 0.845 38 H 0.161 0.839 39 H 0.156 0.844 40 H 0.143 0.857 41 H 0.146 0.854 42 H 0.138 0.862 43 H 0.091 0.909 44 H 0.132 0.868 45 H 0.115 0.885 46 H 0.083 0.917 47 H 0.105 0.895 48 H 0.080 0.920 49 H 0.200 0.800 50 H 0.064 0.936 51 H 0.045 0.955 52 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges -24.786 4.115 -13.304 28.430 hybrid contribution 1.283 0.927 0.492 1.657 sum -23.503 5.043 -12.813 27.240 Atomic orbital electron populations 1.21730 0.92525 1.02727 1.02657 1.20563 0.97738 0.91852 1.02290 1.19956 0.98584 0.96405 0.92915 1.21282 1.00105 0.95692 0.97842 1.21438 0.99087 0.94830 0.98868 1.21369 1.00514 1.01020 0.92488 1.21250 0.99017 0.94907 0.99039 1.19342 1.00730 0.94334 0.93736 1.20723 0.96155 1.00104 0.95823 1.20861 0.89806 0.78948 0.78946 1.90706 1.33784 1.64961 1.57729 1.49438 1.17181 1.47931 1.21423 1.23069 0.88956 0.97111 0.92965 1.22656 0.95076 0.94787 0.98056 0.87005 1.22134 0.99656 0.99838 0.92880 1.22531 0.94266 1.00928 0.98904 1.20992 0.91506 0.90281 0.91069 0.93080 1.42785 1.02386 1.18265 1.74213 1.19026 0.82870 1.01110 1.32340 0.92645 1.25436 0.95537 1.01751 1.02713 1.69877 1.04610 1.35064 1.54023 0.85558 0.78173 0.79822 0.79083 1.19809 1.23334 1.17550 1.23071 0.95836 0.96188 0.98726 0.90340 1.22732 0.90406 0.92499 0.96060 0.91091 0.91927 0.91947 0.90897 0.92940 0.84507 0.83910 0.84400 0.85722 0.85423 0.86185 0.90858 0.86821 0.88488 0.91718 0.89509 0.91971 0.79991 0.93596 0.95526 0.89638 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.72 71.98 0.70 -1.21 16 2 C -0.09 -1.77 5.38 29.85 0.16 -1.61 16 3 C -0.08 -1.87 5.13 -19.87 -0.10 -1.97 16 4 C -0.13 -2.84 9.68 22.27 0.22 -2.62 16 5 C -0.12 -2.54 10.05 22.27 0.22 -2.32 16 6 C -0.14 -2.97 10.05 22.27 0.22 -2.75 16 7 C -0.12 -3.04 9.68 22.27 0.22 -2.83 16 8 C -0.08 -2.03 4.37 -19.86 -0.09 -2.12 16 9 C -0.09 -1.97 4.14 29.10 0.12 -1.85 16 10 C 0.52 17.23 7.12 87.65 0.62 17.85 16 11 O -0.59 -26.01 16.32 -3.01 -0.05 -26.06 16 12 N -0.63 -19.48 3.31 -805.76 -2.67 -22.15 16 13 C 0.10 2.09 6.46 86.68 0.56 2.65 16 14 C -0.09 -1.74 3.95 -9.32 -0.04 -1.78 16 15 H 0.11 1.68 8.14 -2.39 -0.02 1.66 16 16 C -0.11 -1.95 6.37 31.11 0.20 -1.76 16 17 C -0.13 -3.12 6.50 31.24 0.20 -2.92 16 18 C 0.17 5.81 3.54 45.50 0.16 5.97 16 19 H 0.05 1.92 7.91 -2.39 -0.02 1.90 16 20 N -0.73 -31.88 2.69 -320.51 -0.86 -32.74 16 21 C -0.22 -12.38 9.92 84.03 0.83 -11.55 16 22 H 0.06 3.44 7.97 -2.91 -0.02 3.41 16 23 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 24 N -0.98 -64.24 13.97 21.65 0.30 -63.94 16 25 Si 0.95 45.60 27.73 68.60 1.90 47.51 16 26 H -0.27 -12.55 7.11 99.48 0.71 -11.84 16 27 H -0.31 -15.46 7.11 99.48 0.71 -14.76 16 28 H -0.25 -10.78 6.52 99.48 0.65 -10.13 16 29 C -0.12 -3.52 3.93 -9.48 -0.04 -3.56 16 30 H 0.08 2.33 8.14 -2.39 -0.02 2.31 16 31 C 0.11 4.11 6.27 86.51 0.54 4.65 16 32 H 0.07 0.80 8.14 -2.39 -0.02 0.78 16 33 H 0.06 0.77 6.80 -2.39 -0.02 0.76 16 34 H 0.06 0.79 8.14 -2.38 -0.02 0.77 16 35 H 0.07 1.41 8.05 -2.39 -0.02 1.39 16 36 H 0.05 1.27 6.42 -2.39 -0.02 1.25 16 37 H 0.14 2.32 8.06 -2.91 -0.02 2.30 16 38 H 0.14 2.11 8.06 -2.91 -0.02 2.09 16 39 H 0.14 2.36 8.06 -2.91 -0.02 2.34 16 40 H 0.12 2.75 8.06 -2.91 -0.02 2.73 16 41 H 0.13 2.08 5.47 -2.39 -0.01 2.07 16 42 H 0.12 2.09 8.05 -2.39 -0.02 2.07 16 43 H 0.07 1.57 7.22 -2.38 -0.02 1.55 16 44 H 0.11 1.43 7.32 -2.39 -0.02 1.42 16 45 H 0.10 1.18 8.14 -2.39 -0.02 1.16 16 46 H 0.06 1.22 7.13 -2.39 -0.02 1.20 16 47 H 0.09 1.75 8.14 -2.39 -0.02 1.73 16 48 H 0.06 1.67 8.09 -2.39 -0.02 1.65 16 49 H 0.37 15.29 5.49 -92.71 -0.51 14.78 16 50 H 0.26 16.00 8.31 -92.71 -0.77 15.23 16 51 H 0.03 1.22 7.88 -2.39 -0.02 1.20 16 52 H 0.09 3.87 5.19 -2.39 -0.01 3.85 16 Total: -1.00 -79.62 400.89 4.16 -75.46 By element: Atomic # 1 Polarization: 34.53 SS G_CDS: 0.34 Total: 34.87 kcal Atomic # 6 Polarization: -18.15 SS G_CDS: 5.19 Total: -12.96 kcal Atomic # 7 Polarization: -115.60 SS G_CDS: -3.22 Total: -118.82 kcal Atomic # 8 Polarization: -26.01 SS G_CDS: -0.05 Total: -26.06 kcal Atomic # 14 Polarization: 45.60 SS G_CDS: 1.90 Total: 47.51 kcal Total: -79.62 4.16 -75.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026294787.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.624 kcal (2) G-P(sol) polarization free energy of solvation -79.622 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.998 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.160 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.462 kcal (6) G-S(sol) free energy of system = (1) + (5) -12.838 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds