Wall clock time and date at job start Wed Apr 1 2020 02:59:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50706 * 109.46956 * 2 1 4 4 C 1.38256 * 120.00066 * 264.72716 * 3 2 1 5 5 C 1.38218 * 119.99718 * 179.78517 * 4 3 2 6 6 C 1.38256 * 119.99999 * 0.44998 * 5 4 3 7 7 C 1.38216 * 120.00057 * 359.80383 * 6 5 4 8 8 C 1.38220 * 119.99654 * 85.00068 * 3 2 1 9 9 C 1.50698 * 119.99880 * 359.97438 * 8 3 2 10 10 C 1.50704 * 109.47351 * 84.99911 * 9 8 3 11 11 O 1.21282 * 119.99435 * 359.97438 * 10 9 8 12 12 N 1.34774 * 119.99880 * 179.97438 * 10 9 8 13 13 C 1.49217 * 126.06099 * 0.02608 * 12 10 9 14 14 C 1.50345 * 104.86086 * 172.92781 * 13 12 10 15 15 H 1.08995 * 110.05046 * 278.95663 * 14 13 12 16 16 C 1.50996 * 125.56639 * 143.74253 * 14 13 12 17 17 C 1.56401 * 101.59621 * 203.98135 * 16 14 13 18 18 C 1.55948 * 105.78545 * 25.01948 * 17 16 14 19 19 H 1.09004 * 110.49193 * 126.20851 * 18 17 16 20 20 N 1.46494 * 110.49105 * 248.73544 * 18 17 16 21 21 C 1.36942 * 120.00281 * 273.54709 * 20 18 17 22 22 H 1.07995 * 119.99946 * 0.02562 * 21 20 18 23 23 C 1.38810 * 120.00191 * 180.02562 * 21 20 18 24 24 N 1.31624 * 120.00066 * 359.97438 * 23 21 20 25 25 Si 1.86799 * 120.00215 * 180.02562 * 23 21 20 26 26 H 1.48500 * 109.47233 * 59.99261 * 25 23 21 27 27 H 1.48504 * 109.47350 * 179.97438 * 25 23 21 28 28 H 1.48503 * 109.46884 * 299.99691 * 25 23 21 29 29 C 1.50328 * 103.80394 * 8.04709 * 18 17 16 30 30 H 1.09000 * 110.56130 * 79.87734 * 29 18 17 31 31 C 1.49696 * 126.05625 * 179.71294 * 12 10 9 32 32 H 1.09002 * 109.47311 * 59.99562 * 1 2 3 33 33 H 1.09002 * 109.46959 * 179.97438 * 1 2 3 34 34 H 1.09003 * 109.47335 * 299.99441 * 1 2 3 35 35 H 1.08999 * 109.46886 * 240.00748 * 2 1 3 36 36 H 1.08999 * 109.47559 * 119.99979 * 2 1 3 37 37 H 1.07998 * 120.00433 * 0.02562 * 4 3 2 38 38 H 1.07999 * 119.99937 * 180.27304 * 5 4 3 39 39 H 1.08002 * 120.00208 * 179.83126 * 6 5 4 40 40 H 1.08000 * 120.00481 * 180.02562 * 7 6 5 41 41 H 1.09000 * 109.46648 * 204.99855 * 9 8 3 42 42 H 1.08999 * 109.46926 * 324.99408 * 9 8 3 43 43 H 1.08995 * 110.35962 * 291.77832 * 13 12 10 44 44 H 1.09007 * 110.35875 * 53.97723 * 13 12 10 45 45 H 1.09006 * 111.00348 * 322.06194 * 16 14 13 46 46 H 1.09002 * 111.00116 * 85.86927 * 16 14 13 47 47 H 1.08998 * 110.18379 * 144.09536 * 17 16 14 48 48 H 1.08993 * 110.19073 * 265.93890 * 17 16 14 49 49 H 0.97006 * 119.99931 * 93.55088 * 20 18 17 50 50 H 0.96994 * 120.00060 * 180.02562 * 24 23 21 51 51 H 1.09002 * 110.84899 * 273.06034 * 31 12 10 52 52 H 1.08995 * 110.84383 * 36.66943 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.3664 2.0360 -1.1923 5 6 2.8229 3.3406 -1.1926 6 6 2.9541 4.0274 0.0001 7 6 2.6251 3.4107 1.1925 8 6 2.1642 2.1072 1.1925 9 6 1.8053 1.4348 2.4925 10 6 2.9841 0.6372 2.9879 11 8 4.0142 0.6165 2.3479 12 7 2.8937 -0.0530 4.1420 13 6 1.6983 -0.1227 5.0323 14 6 2.0522 -1.1482 6.0733 15 1 1.8902 -2.1515 5.6796 16 6 1.6577 -1.0934 7.5298 17 6 2.7649 -1.9798 8.1889 18 6 3.9895 -1.9149 7.2256 19 1 4.8838 -1.6036 7.7656 20 7 4.2060 -3.2135 6.5831 21 6 4.9647 -4.1680 7.2066 22 1 5.4031 -3.9635 8.1721 23 6 5.1702 -5.3983 6.5975 24 7 4.6354 -5.6477 5.4210 25 14 6.2045 -6.7005 7.4483 26 1 5.5894 -7.0454 8.7552 27 1 6.2699 -7.9152 6.5965 28 1 7.5762 -6.1763 7.6698 29 6 3.5993 -0.8685 6.2193 30 1 3.7595 0.1307 6.6243 31 6 3.9725 -0.8908 4.7544 32 1 -0.3634 0.5139 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8900 35 1 1.8932 -0.5137 -0.8901 36 1 1.8934 -0.5138 0.8900 37 1 2.2671 1.4984 -2.1237 38 1 3.0797 3.8226 -2.1243 39 1 3.3134 5.0459 0.0002 40 1 2.7272 3.9472 2.1242 41 1 1.5417 2.1910 3.2320 42 1 0.9566 0.7692 2.3351 43 1 1.5165 0.8451 5.4996 44 1 0.8223 -0.4406 4.4668 45 1 1.6988 -0.0717 7.9076 46 1 0.6685 -1.5249 7.6831 47 1 3.0339 -1.5802 9.1667 48 1 2.4160 -3.0079 8.2851 49 1 3.8119 -3.3973 5.7160 50 1 4.7787 -6.5076 4.9956 51 1 3.9458 -1.9066 4.3601 52 1 4.9515 -0.4382 4.5970 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026294788.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:45 Heat of formation + Delta-G solvation = -9.354662 kcal Electronic energy + Delta-G solvation = -30301.993911 eV Core-core repulsion = 26458.623445 eV Total energy + Delta-G solvation = -3843.370466 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.81007 -40.78527 -39.38590 -36.64478 -35.22165 -35.02952 -33.56308 -32.58636 -31.02028 -30.32351 -29.89717 -28.30672 -26.88877 -25.17076 -24.80356 -24.28203 -22.85712 -21.52954 -21.11905 -20.34537 -20.03888 -19.41650 -17.89422 -17.63838 -17.17425 -16.96664 -16.63526 -16.13772 -15.86253 -15.73511 -15.63037 -15.21903 -14.90766 -14.73207 -14.63674 -14.39797 -13.96695 -13.94241 -13.81032 -13.60590 -13.22018 -13.18855 -12.98436 -12.86674 -12.80345 -12.66481 -12.60742 -12.37858 -12.24736 -12.16861 -12.04339 -11.80736 -11.71405 -11.56352 -11.50956 -11.39488 -11.04060 -10.88677 -10.79869 -9.70320 -9.68118 -9.47375 -8.96989 -7.93119 -5.20358 0.42637 0.52492 1.46205 1.48753 1.54569 1.63695 1.88922 2.56624 2.85881 3.02249 3.41076 3.62939 3.76359 3.78481 3.84909 3.97536 4.01721 4.05608 4.09270 4.24191 4.29847 4.32350 4.36091 4.45606 4.47448 4.49828 4.52259 4.62882 4.63864 4.69401 4.71594 4.74600 4.75454 4.85811 4.96889 5.01191 5.04965 5.06663 5.09096 5.16666 5.22105 5.24272 5.24962 5.37186 5.40602 5.46143 5.55202 5.59812 5.63454 5.70296 5.75834 6.15443 6.29624 6.53981 7.15519 7.35466 8.13540 8.35033 9.30204 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014743 B = 0.002582 C = 0.002419 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1898.784108 B =10839.948855 C =11573.902661 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.080 4.080 4 C -0.134 4.134 5 C -0.124 4.124 6 C -0.134 4.134 7 C -0.117 4.117 8 C -0.081 4.081 9 C -0.090 4.090 10 C 0.524 3.476 11 O -0.586 6.586 12 N -0.625 5.625 13 C 0.123 3.877 14 C -0.113 4.113 15 H 0.054 0.946 16 C -0.079 4.079 17 C -0.139 4.139 18 C 0.180 3.820 19 H 0.045 0.955 20 N -0.730 5.730 21 C -0.234 4.234 22 H 0.076 0.924 23 C -0.077 4.077 24 N -0.971 5.971 25 Si 0.969 3.031 26 H -0.276 1.276 27 H -0.299 1.299 28 H -0.281 1.281 29 C -0.118 4.118 30 H 0.103 0.897 31 C 0.133 3.867 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.069 0.931 36 H 0.048 0.952 37 H 0.132 0.868 38 H 0.142 0.858 39 H 0.142 0.858 40 H 0.134 0.866 41 H 0.131 0.869 42 H 0.119 0.881 43 H 0.107 0.893 44 H 0.092 0.908 45 H 0.096 0.904 46 H 0.076 0.924 47 H 0.072 0.928 48 H 0.044 0.956 49 H 0.372 0.628 50 H 0.248 0.752 51 H 0.043 0.957 52 H 0.054 0.946 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.517 21.315 -6.043 25.953 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.127 4.127 3 C -0.080 4.080 4 C -0.152 4.152 5 C -0.142 4.142 6 C -0.152 4.152 7 C -0.135 4.135 8 C -0.082 4.082 9 C -0.129 4.129 10 C 0.315 3.685 11 O -0.466 6.466 12 N -0.359 5.359 13 C 0.003 3.997 14 C -0.132 4.132 15 H 0.073 0.927 16 C -0.117 4.117 17 C -0.180 4.180 18 C 0.071 3.929 19 H 0.063 0.937 20 N -0.370 5.370 21 C -0.366 4.366 22 H 0.094 0.906 23 C -0.269 4.269 24 N -0.622 5.622 25 Si 0.798 3.202 26 H -0.202 1.202 27 H -0.226 1.226 28 H -0.207 1.207 29 C -0.138 4.138 30 H 0.121 0.879 31 C 0.010 3.990 32 H 0.083 0.917 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.088 0.912 36 H 0.067 0.933 37 H 0.150 0.850 38 H 0.160 0.840 39 H 0.160 0.840 40 H 0.152 0.848 41 H 0.149 0.851 42 H 0.137 0.863 43 H 0.125 0.875 44 H 0.110 0.890 45 H 0.114 0.886 46 H 0.095 0.905 47 H 0.091 0.909 48 H 0.063 0.937 49 H 0.205 0.795 50 H 0.057 0.943 51 H 0.061 0.939 52 H 0.073 0.927 Dipole moment (debyes) X Y Z Total from point charges -12.867 21.272 -6.327 25.653 hybrid contribution 1.117 -1.650 -0.157 1.999 sum -11.750 19.622 -6.484 23.772 Atomic orbital electron populations 1.21729 0.92714 1.02473 1.02795 1.20560 0.97671 0.92394 1.02043 1.19913 0.98753 0.96028 0.93303 1.21250 1.00335 0.95891 0.97676 1.21429 0.99111 0.94584 0.99109 1.21394 1.00409 1.01039 0.92347 1.21259 0.98554 0.94479 0.99242 1.19356 1.00748 0.94594 0.93495 1.20735 0.95881 1.00247 0.96005 1.20868 0.89844 0.79016 0.78795 1.90711 1.33655 1.65266 1.57009 1.49980 1.15627 1.47811 1.22495 1.21508 0.86913 1.00530 0.90762 1.22163 0.95469 0.98882 0.96729 0.92730 1.21653 0.98109 1.00962 0.90972 1.23658 0.95852 0.99433 0.99023 1.20424 0.95885 0.84229 0.92381 0.93712 1.42568 1.60567 1.11911 1.21963 1.19585 1.22219 0.93605 1.01206 0.90597 1.25500 1.03200 1.00346 0.97876 1.69810 1.51089 1.23734 1.17574 0.85278 0.78856 0.78544 0.77498 1.20228 1.22598 1.20740 1.22393 0.97805 1.00479 0.93092 0.87855 1.21217 0.90631 0.93788 0.93329 0.91735 0.91715 0.91709 0.91233 0.93283 0.85044 0.84043 0.84023 0.84824 0.85150 0.86314 0.87540 0.88963 0.88567 0.90534 0.90917 0.93710 0.79530 0.94281 0.93861 0.92740 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.29 9.72 71.98 0.70 -1.59 16 2 C -0.09 -2.00 5.38 29.85 0.16 -1.84 16 3 C -0.08 -1.89 5.13 -19.86 -0.10 -2.00 16 4 C -0.13 -2.86 9.68 22.27 0.22 -2.64 16 5 C -0.12 -2.37 10.05 22.27 0.22 -2.14 16 6 C -0.13 -2.55 10.05 22.27 0.22 -2.32 16 7 C -0.12 -2.46 9.68 22.27 0.22 -2.25 16 8 C -0.08 -1.89 4.37 -19.87 -0.09 -1.97 16 9 C -0.09 -1.80 4.40 29.10 0.13 -1.67 16 10 C 0.52 15.69 7.07 87.66 0.62 16.31 16 11 O -0.59 -23.58 16.36 -3.04 -0.05 -23.63 16 12 N -0.62 -17.73 3.42 -814.58 -2.79 -20.52 16 13 C 0.12 2.43 6.41 84.99 0.54 2.97 16 14 C -0.11 -2.87 2.75 -10.56 -0.03 -2.90 16 15 H 0.05 1.80 7.68 -2.39 -0.02 1.78 16 16 C -0.08 -1.71 6.70 31.13 0.21 -1.50 16 17 C -0.14 -4.24 6.73 32.80 0.22 -4.02 16 18 C 0.18 6.68 3.42 45.15 0.15 6.84 16 19 H 0.04 1.71 8.11 -2.38 -0.02 1.69 16 20 N -0.73 -35.86 4.85 -322.20 -1.56 -37.43 16 21 C -0.23 -12.87 9.97 84.03 0.84 -12.03 16 22 H 0.08 3.99 7.83 -2.91 -0.02 3.97 16 23 C -0.08 -4.46 5.50 84.86 0.47 -3.99 16 24 N -0.97 -60.16 13.06 21.65 0.28 -59.88 16 25 Si 0.97 46.65 29.55 68.60 2.03 48.68 16 26 H -0.28 -12.69 7.11 99.48 0.71 -11.99 16 27 H -0.30 -14.68 7.11 99.48 0.71 -13.98 16 28 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 29 C -0.12 -3.60 2.62 -10.51 -0.03 -3.63 16 30 H 0.10 2.65 8.14 -2.39 -0.02 2.63 16 31 C 0.13 4.75 6.53 85.17 0.56 5.31 16 32 H 0.06 0.95 8.14 -2.39 -0.02 0.93 16 33 H 0.06 0.99 8.14 -2.39 -0.02 0.97 16 34 H 0.06 0.93 6.80 -2.39 -0.02 0.91 16 35 H 0.07 1.53 8.05 -2.39 -0.02 1.51 16 36 H 0.05 1.32 6.42 -2.39 -0.02 1.30 16 37 H 0.13 2.33 8.06 -2.91 -0.02 2.31 16 38 H 0.14 1.93 8.06 -2.91 -0.02 1.90 16 39 H 0.14 1.94 8.06 -2.91 -0.02 1.91 16 40 H 0.13 2.26 8.06 -2.91 -0.02 2.24 16 41 H 0.13 1.75 8.05 -2.39 -0.02 1.74 16 42 H 0.12 1.98 5.62 -2.39 -0.01 1.97 16 43 H 0.11 1.38 8.14 -2.39 -0.02 1.36 16 44 H 0.09 1.47 8.14 -2.38 -0.02 1.45 16 45 H 0.10 1.51 8.14 -2.38 -0.02 1.49 16 46 H 0.08 1.49 8.14 -2.39 -0.02 1.47 16 47 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 48 H 0.04 1.65 7.98 -2.39 -0.02 1.63 16 49 H 0.37 19.93 6.16 -92.70 -0.57 19.36 16 50 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 51 H 0.04 1.88 6.89 -2.39 -0.02 1.87 16 52 H 0.05 2.13 8.09 -2.39 -0.02 2.11 16 Total: -1.00 -74.98 408.09 3.47 -71.51 By element: Atomic # 1 Polarization: 36.00 SS G_CDS: 0.33 Total: 36.33 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 5.23 Total: -15.06 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -4.07 Total: -117.82 kcal Atomic # 8 Polarization: -23.58 SS G_CDS: -0.05 Total: -23.63 kcal Atomic # 14 Polarization: 46.65 SS G_CDS: 2.03 Total: 48.68 kcal Total: -74.98 3.47 -71.51 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026294788.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 62.154 kcal (2) G-P(sol) polarization free energy of solvation -74.981 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.826 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.472 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.509 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.355 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds