Wall clock time and date at job start Wed Apr 1 2020 02:59:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47227 * 2 1 4 4 C 1.38254 * 120.00313 * 264.97847 * 3 2 1 5 5 C 1.38210 * 120.00157 * 179.97438 * 4 3 2 6 6 C 1.38263 * 119.99757 * 359.97438 * 5 4 3 7 7 C 1.38207 * 120.00114 * 359.81158 * 6 5 4 8 8 C 1.38213 * 119.99756 * 85.00292 * 3 2 1 9 9 C 1.50702 * 119.99860 * 359.97438 * 8 3 2 10 10 C 1.50705 * 109.47174 * 85.00573 * 9 8 3 11 11 O 1.21279 * 119.99653 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99865 * 179.97438 * 10 9 8 13 13 C 1.48340 * 128.20007 * 359.97438 * 12 10 9 14 14 C 1.54462 * 104.30855 * 138.23100 * 13 12 10 15 15 H 1.08997 * 111.93510 * 262.71676 * 14 13 12 16 16 C 1.54150 * 108.79502 * 138.54363 * 14 13 12 17 17 C 1.54834 * 104.34549 * 224.04728 * 16 14 13 18 18 C 1.54833 * 102.73807 * 38.22865 * 17 16 14 19 19 H 1.08995 * 110.46197 * 80.48587 * 18 17 16 20 20 N 1.46503 * 110.45742 * 202.92872 * 18 17 16 21 21 C 1.36925 * 120.00034 * 273.54320 * 20 18 17 22 22 H 1.08002 * 120.00598 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99952 * 180.02562 * 21 20 18 24 24 N 1.31610 * 120.00186 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00011 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47439 * 89.99668 * 25 23 21 27 27 H 1.48500 * 109.47038 * 209.99825 * 25 23 21 28 28 H 1.48504 * 109.46763 * 329.99966 * 25 23 21 29 29 C 1.53826 * 104.39317 * 321.77661 * 18 17 16 30 30 H 1.08996 * 112.55936 * 260.69164 * 29 18 17 31 31 C 1.48343 * 128.19146 * 179.97438 * 12 10 9 32 32 H 1.08999 * 109.47342 * 299.99518 * 1 2 3 33 33 H 1.09002 * 109.47320 * 59.99752 * 1 2 3 34 34 H 1.09001 * 109.47229 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.46922 * 239.99889 * 2 1 3 36 36 H 1.09002 * 109.47320 * 120.00248 * 2 1 3 37 37 H 1.08005 * 119.99605 * 359.97438 * 4 3 2 38 38 H 1.07997 * 120.00212 * 179.97438 * 5 4 3 39 39 H 1.08002 * 119.99447 * 179.97438 * 6 5 4 40 40 H 1.08007 * 120.00027 * 180.22883 * 7 6 5 41 41 H 1.08997 * 109.47227 * 325.00177 * 9 8 3 42 42 H 1.09003 * 109.47065 * 204.99999 * 9 8 3 43 43 H 1.09003 * 110.46221 * 256.93830 * 13 12 10 44 44 H 1.08995 * 110.46272 * 19.52293 * 13 12 10 45 45 H 1.08995 * 110.45370 * 342.76067 * 16 14 13 46 46 H 1.08996 * 110.45599 * 105.20209 * 16 14 13 47 47 H 1.09004 * 110.75562 * 156.53679 * 17 16 14 48 48 H 1.08999 * 110.76031 * 279.73025 * 17 16 14 49 49 H 0.97007 * 119.99677 * 93.54603 * 20 18 17 50 50 H 0.96998 * 120.00660 * 180.02562 * 24 23 21 51 51 H 1.09002 * 110.46781 * 340.47329 * 31 12 10 52 52 H 1.08997 * 110.46296 * 102.93208 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3616 2.0377 -1.1927 5 6 2.8218 3.3409 -1.1927 6 6 2.9524 4.0279 0.0001 7 6 2.6190 3.4127 1.1919 8 6 2.1644 2.1071 1.1924 9 6 1.8054 1.4347 2.4925 10 6 2.9843 0.6372 2.9879 11 8 4.0143 0.6165 2.3479 12 7 2.8940 -0.0530 4.1419 13 6 1.7345 -0.1547 5.0616 14 6 1.6992 -1.6444 5.4681 15 1 0.9870 -2.2129 4.8700 16 6 1.3901 -1.7408 6.9752 17 6 2.3815 -2.8068 7.5026 18 6 3.6685 -2.5045 6.6968 19 1 4.2075 -1.6671 7.1397 20 7 4.5264 -3.6907 6.6382 21 6 5.4205 -3.9394 7.6451 22 1 5.4936 -3.2609 8.4822 23 6 6.2338 -5.0630 7.5893 24 7 6.1451 -5.8895 6.5689 25 14 7.4530 -5.4027 8.9632 26 1 6.8018 -6.2316 10.0092 27 1 8.6265 -6.1292 8.4152 28 1 7.8998 -4.1171 9.5575 29 6 3.1622 -2.1346 5.2922 30 1 3.2325 -2.9653 4.5901 31 6 3.9305 -0.8908 4.7932 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 2.2591 1.5011 -2.1244 38 1 3.0794 3.8226 -2.1243 39 1 3.3124 5.0461 0.0000 40 1 2.7176 3.9506 2.1233 41 1 0.9568 0.7690 2.3351 42 1 1.5419 2.1908 3.2320 43 1 1.8865 0.4759 5.9376 44 1 0.8144 0.1219 4.5468 45 1 1.5670 -0.7820 7.4624 46 1 0.3611 -2.0634 7.1332 47 1 2.5553 -2.6777 8.5709 48 1 2.0168 -3.8119 7.2908 49 1 4.4611 -4.2998 5.8861 50 1 6.7131 -6.6749 6.5301 51 1 4.6957 -1.1792 4.0725 52 1 4.3794 -0.3583 5.6317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026294789.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:51 Heat of formation + Delta-G solvation = -7.690498 kcal Electronic energy + Delta-G solvation = -30046.234372 eV Core-core repulsion = 26202.936069 eV Total energy + Delta-G solvation = -3843.298302 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.55286 -39.67132 -38.16820 -35.14667 -34.48763 -33.33689 -32.74424 -30.99633 -29.89905 -29.51037 -28.39597 -27.49704 -25.03230 -24.12404 -23.64964 -22.87057 -22.08438 -20.80024 -20.18041 -19.10844 -18.87713 -17.27967 -16.97624 -16.57507 -16.32987 -15.75363 -15.52553 -15.10783 -15.01369 -14.25376 -14.13439 -14.00837 -13.83863 -13.63417 -13.28626 -13.20255 -13.10188 -13.02634 -12.78743 -12.35362 -12.24904 -12.07145 -11.95052 -11.76353 -11.67542 -11.46933 -11.16605 -10.98142 -10.87992 -10.85584 -10.79575 -10.67576 -10.38993 -10.26505 -10.22407 -9.96062 -9.77997 -9.65309 -8.92792 -8.88030 -8.70750 -8.64632 -6.95348 -5.77143 -3.05903 1.19432 1.27982 2.67530 2.98927 3.43245 3.48610 3.50319 3.65123 4.42776 4.50034 4.56822 4.57512 4.63210 4.72837 4.77368 4.88628 4.94113 4.97189 5.04624 5.15733 5.19750 5.26902 5.32822 5.39890 5.41953 5.44301 5.46469 5.55831 5.61119 5.69586 5.73956 5.75116 5.82753 5.86801 5.93004 5.94680 5.96040 6.05105 6.05861 6.16819 6.24735 6.31429 6.34134 6.37153 6.41581 6.52201 6.54953 6.65468 6.79057 6.87884 7.03914 7.64054 7.69884 8.22313 8.41303 9.52504 10.10084 10.44030 11.45436 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016691 B = 0.002343 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.150696 B =11948.591384 C =12431.207337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.090 4.090 3 C -0.062 4.062 4 C -0.119 4.119 5 C -0.119 4.119 6 C -0.125 4.125 7 C -0.105 4.105 8 C -0.062 4.062 9 C -0.101 4.101 10 C 0.533 3.467 11 O -0.532 6.532 12 N -0.627 5.627 13 C 0.104 3.896 14 C -0.102 4.102 15 H 0.084 0.916 16 C -0.117 4.117 17 C -0.142 4.142 18 C 0.184 3.816 19 H 0.055 0.945 20 N -0.721 5.721 21 C -0.239 4.239 22 H 0.070 0.930 23 C -0.013 4.013 24 N -0.932 5.932 25 Si 0.905 3.095 26 H -0.290 1.290 27 H -0.292 1.292 28 H -0.282 1.282 29 C -0.104 4.104 30 H 0.088 0.912 31 C 0.114 3.886 32 H 0.055 0.945 33 H 0.056 0.944 34 H 0.059 0.941 35 H 0.072 0.928 36 H 0.072 0.928 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.120 0.880 40 H 0.119 0.881 41 H 0.103 0.897 42 H 0.099 0.901 43 H 0.076 0.924 44 H 0.073 0.927 45 H 0.063 0.937 46 H 0.059 0.941 47 H 0.059 0.941 48 H 0.066 0.934 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.081 0.919 52 H 0.074 0.926 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.913 18.142 -11.264 26.631 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.127 4.127 3 C -0.062 4.062 4 C -0.137 4.137 5 C -0.137 4.137 6 C -0.143 4.143 7 C -0.123 4.123 8 C -0.062 4.062 9 C -0.141 4.141 10 C 0.322 3.678 11 O -0.408 6.408 12 N -0.361 5.361 13 C -0.019 4.019 14 C -0.121 4.121 15 H 0.103 0.897 16 C -0.155 4.155 17 C -0.182 4.182 18 C 0.073 3.927 19 H 0.073 0.927 20 N -0.361 5.361 21 C -0.370 4.370 22 H 0.088 0.912 23 C -0.209 4.209 24 N -0.580 5.580 25 Si 0.737 3.263 26 H -0.218 1.218 27 H -0.218 1.218 28 H -0.208 1.208 29 C -0.124 4.124 30 H 0.106 0.894 31 C -0.008 4.008 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.078 0.922 35 H 0.091 0.909 36 H 0.091 0.909 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.138 0.862 40 H 0.137 0.863 41 H 0.121 0.879 42 H 0.117 0.883 43 H 0.094 0.906 44 H 0.092 0.908 45 H 0.082 0.918 46 H 0.078 0.922 47 H 0.077 0.923 48 H 0.084 0.916 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.099 0.901 52 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges -15.189 18.202 -11.586 26.386 hybrid contribution 0.697 -0.479 0.611 1.043 sum -14.492 17.723 -10.975 25.388 Atomic orbital electron populations 1.21765 0.94661 1.01904 1.02018 1.20581 0.95956 0.92838 1.03355 1.19678 0.98214 0.95714 0.92612 1.20980 1.00136 0.95189 0.97347 1.21097 0.99774 0.94823 0.98003 1.21050 1.00772 0.99966 0.92556 1.20963 0.98734 0.94447 0.98166 1.19123 1.00052 0.93969 0.93091 1.20713 0.97682 0.99903 0.95803 1.20049 0.89344 0.79202 0.79224 1.90746 1.31335 1.63025 1.55719 1.49275 1.16429 1.48806 1.21598 1.22757 0.88808 0.97263 0.93117 1.22770 0.97498 0.94429 0.97443 0.89712 1.22409 0.99418 0.99962 0.93744 1.23215 0.96837 0.98047 1.00146 1.21056 0.90158 0.90941 0.90518 0.92748 1.42444 1.42786 1.24888 1.25977 1.19218 1.12132 1.05820 0.99863 0.91207 1.24740 1.00267 0.97797 0.98085 1.69650 1.42612 1.15100 1.30671 0.86216 0.80891 0.77817 0.81420 1.21761 1.21801 1.20772 1.22994 0.93085 0.96943 0.99411 0.89375 1.22608 0.91006 0.90176 0.96988 0.92604 0.92502 0.92168 0.90897 0.90925 0.86209 0.86265 0.86219 0.86293 0.87903 0.88308 0.90605 0.90843 0.91785 0.92244 0.92264 0.91554 0.78187 0.93497 0.90050 0.90774 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.72 37.16 0.36 -0.78 16 2 C -0.09 -0.91 5.38 -27.88 -0.15 -1.06 16 3 C -0.06 -0.70 5.13 -104.62 -0.54 -1.23 16 4 C -0.12 -1.22 9.68 -39.59 -0.38 -1.61 16 5 C -0.12 -1.15 10.05 -39.58 -0.40 -1.55 16 6 C -0.13 -1.24 10.05 -39.58 -0.40 -1.64 16 7 C -0.11 -1.13 9.68 -39.59 -0.38 -1.51 16 8 C -0.06 -0.71 4.37 -104.62 -0.46 -1.16 16 9 C -0.10 -1.03 4.15 -29.03 -0.12 -1.15 16 10 C 0.53 7.51 7.12 -10.98 -0.08 7.44 16 11 O -0.53 -9.83 16.32 5.56 0.09 -9.73 16 12 N -0.63 -8.31 3.31 -168.89 -0.56 -8.86 16 13 C 0.10 1.05 6.46 -2.26 -0.01 1.03 16 14 C -0.10 -1.21 3.96 -88.03 -0.35 -1.56 16 15 H 0.08 0.94 8.14 -51.93 -0.42 0.52 16 16 C -0.12 -1.38 6.36 -25.16 -0.16 -1.54 16 17 C -0.14 -2.30 6.57 -24.80 -0.16 -2.47 16 18 C 0.18 3.41 3.03 -66.53 -0.20 3.21 16 19 H 0.05 1.04 7.15 -51.93 -0.37 0.67 16 20 N -0.72 -17.46 5.22 -52.07 -0.27 -17.73 16 21 C -0.24 -6.49 9.97 -15.06 -0.15 -6.64 16 22 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 23 C -0.01 -0.36 5.50 -17.43 -0.10 -0.46 16 24 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 25 Si 0.91 22.30 29.55 -169.99 -5.02 17.27 16 26 H -0.29 -7.11 7.11 56.52 0.40 -6.71 16 27 H -0.29 -7.28 7.11 56.52 0.40 -6.88 16 28 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 29 C -0.10 -1.62 3.62 -88.20 -0.32 -1.94 16 30 H 0.09 1.52 7.80 -51.93 -0.41 1.12 16 31 C 0.11 1.78 6.58 -2.25 -0.01 1.76 16 32 H 0.05 0.41 6.80 -51.93 -0.35 0.05 16 33 H 0.06 0.41 8.14 -51.93 -0.42 -0.01 16 34 H 0.06 0.42 8.14 -51.93 -0.42 0.00 16 35 H 0.07 0.70 8.05 -51.93 -0.42 0.28 16 36 H 0.07 0.85 6.42 -51.93 -0.33 0.52 16 37 H 0.12 1.01 8.06 -52.48 -0.42 0.59 16 38 H 0.12 0.87 8.06 -52.49 -0.42 0.45 16 39 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 40 H 0.12 1.08 8.06 -52.48 -0.42 0.66 16 41 H 0.10 0.87 5.47 -51.93 -0.28 0.59 16 42 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 43 H 0.08 0.70 7.20 -51.93 -0.37 0.33 16 44 H 0.07 0.56 7.32 -51.93 -0.38 0.18 16 45 H 0.06 0.68 7.18 -51.93 -0.37 0.31 16 46 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 47 H 0.06 0.99 8.14 -51.93 -0.42 0.56 16 48 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 49 H 0.38 10.00 7.58 -40.82 -0.31 9.69 16 50 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 51 H 0.08 1.46 7.88 -51.93 -0.41 1.05 16 52 H 0.07 1.15 7.21 -51.93 -0.37 0.78 16 LS Contribution 407.50 15.07 6.14 6.14 Total: -1.00 -32.83 407.50 -11.49 -44.32 By element: Atomic # 1 Polarization: 17.31 SS G_CDS: -8.58 Total: 8.74 kcal Atomic # 6 Polarization: -8.84 SS G_CDS: -4.01 Total: -12.85 kcal Atomic # 7 Polarization: -53.77 SS G_CDS: -0.11 Total: -53.88 kcal Atomic # 8 Polarization: -9.83 SS G_CDS: 0.09 Total: -9.73 kcal Atomic # 14 Polarization: 22.30 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.14 Total: 6.14 kcal Total: -32.83 -11.49 -44.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026294789.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 36.626 kcal (2) G-P(sol) polarization free energy of solvation -32.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 3.797 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.488 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.316 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds