Wall clock time and date at job start Wed Apr 1 2020 02:59:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47227 * 2 1 4 4 C 1.38254 * 120.00313 * 264.97847 * 3 2 1 5 5 C 1.38210 * 120.00157 * 179.97438 * 4 3 2 6 6 C 1.38263 * 119.99757 * 359.97438 * 5 4 3 7 7 C 1.38207 * 120.00114 * 359.81158 * 6 5 4 8 8 C 1.38213 * 119.99756 * 85.00292 * 3 2 1 9 9 C 1.50702 * 119.99860 * 359.97438 * 8 3 2 10 10 C 1.50705 * 109.47174 * 85.00573 * 9 8 3 11 11 O 1.21279 * 119.99653 * 359.97438 * 10 9 8 12 12 N 1.34773 * 119.99865 * 179.97438 * 10 9 8 13 13 C 1.48340 * 128.20007 * 359.97438 * 12 10 9 14 14 C 1.54462 * 104.30855 * 138.23100 * 13 12 10 15 15 H 1.08997 * 111.93510 * 262.71676 * 14 13 12 16 16 C 1.54150 * 108.79502 * 138.54363 * 14 13 12 17 17 C 1.54834 * 104.34549 * 224.04728 * 16 14 13 18 18 C 1.54833 * 102.73807 * 38.22865 * 17 16 14 19 19 H 1.08995 * 110.46197 * 80.48587 * 18 17 16 20 20 N 1.46503 * 110.45742 * 202.92872 * 18 17 16 21 21 C 1.36925 * 120.00034 * 273.54320 * 20 18 17 22 22 H 1.08002 * 120.00598 * 359.97438 * 21 20 18 23 23 C 1.38819 * 119.99952 * 180.02562 * 21 20 18 24 24 N 1.31610 * 120.00186 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00011 * 180.02562 * 23 21 20 26 26 H 1.48498 * 109.47439 * 89.99668 * 25 23 21 27 27 H 1.48500 * 109.47038 * 209.99825 * 25 23 21 28 28 H 1.48504 * 109.46763 * 329.99966 * 25 23 21 29 29 C 1.53826 * 104.39317 * 321.77661 * 18 17 16 30 30 H 1.08996 * 112.55936 * 260.69164 * 29 18 17 31 31 C 1.48343 * 128.19146 * 179.97438 * 12 10 9 32 32 H 1.08999 * 109.47342 * 299.99518 * 1 2 3 33 33 H 1.09002 * 109.47320 * 59.99752 * 1 2 3 34 34 H 1.09001 * 109.47229 * 179.97438 * 1 2 3 35 35 H 1.09004 * 109.46922 * 239.99889 * 2 1 3 36 36 H 1.09002 * 109.47320 * 120.00248 * 2 1 3 37 37 H 1.08005 * 119.99605 * 359.97438 * 4 3 2 38 38 H 1.07997 * 120.00212 * 179.97438 * 5 4 3 39 39 H 1.08002 * 119.99447 * 179.97438 * 6 5 4 40 40 H 1.08007 * 120.00027 * 180.22883 * 7 6 5 41 41 H 1.08997 * 109.47227 * 325.00177 * 9 8 3 42 42 H 1.09003 * 109.47065 * 204.99999 * 9 8 3 43 43 H 1.09003 * 110.46221 * 256.93830 * 13 12 10 44 44 H 1.08995 * 110.46272 * 19.52293 * 13 12 10 45 45 H 1.08995 * 110.45370 * 342.76067 * 16 14 13 46 46 H 1.08996 * 110.45599 * 105.20209 * 16 14 13 47 47 H 1.09004 * 110.75562 * 156.53679 * 17 16 14 48 48 H 1.08999 * 110.76031 * 279.73025 * 17 16 14 49 49 H 0.97007 * 119.99677 * 93.54603 * 20 18 17 50 50 H 0.96998 * 120.00660 * 180.02562 * 24 23 21 51 51 H 1.09002 * 110.46781 * 340.47329 * 31 12 10 52 52 H 1.08997 * 110.46296 * 102.93208 * 31 12 10 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3616 2.0377 -1.1927 5 6 2.8218 3.3409 -1.1927 6 6 2.9524 4.0279 0.0001 7 6 2.6190 3.4127 1.1919 8 6 2.1644 2.1071 1.1924 9 6 1.8054 1.4347 2.4925 10 6 2.9843 0.6372 2.9879 11 8 4.0143 0.6165 2.3479 12 7 2.8940 -0.0530 4.1419 13 6 1.7345 -0.1547 5.0616 14 6 1.6992 -1.6444 5.4681 15 1 0.9870 -2.2129 4.8700 16 6 1.3901 -1.7408 6.9752 17 6 2.3815 -2.8068 7.5026 18 6 3.6685 -2.5045 6.6968 19 1 4.2075 -1.6671 7.1397 20 7 4.5264 -3.6907 6.6382 21 6 5.4205 -3.9394 7.6451 22 1 5.4936 -3.2609 8.4822 23 6 6.2338 -5.0630 7.5893 24 7 6.1451 -5.8895 6.5689 25 14 7.4530 -5.4027 8.9632 26 1 6.8018 -6.2316 10.0092 27 1 8.6265 -6.1292 8.4152 28 1 7.8998 -4.1171 9.5575 29 6 3.1622 -2.1346 5.2922 30 1 3.2325 -2.9653 4.5901 31 6 3.9305 -0.8908 4.7932 32 1 -0.3634 0.5137 0.8900 33 1 -0.3634 0.5139 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5139 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 2.2591 1.5011 -2.1244 38 1 3.0794 3.8226 -2.1243 39 1 3.3124 5.0461 0.0000 40 1 2.7176 3.9506 2.1233 41 1 0.9568 0.7690 2.3351 42 1 1.5419 2.1908 3.2320 43 1 1.8865 0.4759 5.9376 44 1 0.8144 0.1219 4.5468 45 1 1.5670 -0.7820 7.4624 46 1 0.3611 -2.0634 7.1332 47 1 2.5553 -2.6777 8.5709 48 1 2.0168 -3.8119 7.2908 49 1 4.4611 -4.2998 5.8861 50 1 6.7131 -6.6749 6.5301 51 1 4.6957 -1.1792 4.0725 52 1 4.3794 -0.3583 5.6317 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026294789.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:49 Heat of formation + Delta-G solvation = -25.744550 kcal Electronic energy + Delta-G solvation = -30047.017254 eV Core-core repulsion = 26202.936069 eV Total energy + Delta-G solvation = -3844.081185 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.57955 -40.60679 -39.28671 -36.63890 -35.21805 -34.96818 -33.55827 -32.70405 -31.01616 -30.32929 -29.73841 -28.39083 -26.60575 -24.97610 -24.68576 -24.45740 -22.88337 -21.68039 -21.37034 -20.34771 -19.97016 -19.04961 -18.18613 -17.39024 -17.27313 -17.03252 -16.51294 -16.31348 -16.01125 -15.78472 -15.44116 -15.04679 -14.83055 -14.66981 -14.52386 -14.37065 -13.98533 -13.95961 -13.86061 -13.60154 -13.26514 -13.01736 -12.98084 -12.90426 -12.77749 -12.65410 -12.60831 -12.33092 -12.16013 -12.08984 -11.94836 -11.71422 -11.66735 -11.56540 -11.53103 -11.41666 -11.37988 -10.97615 -10.81079 -9.76428 -9.68676 -9.47508 -8.96599 -7.93857 -5.21430 0.42301 0.52120 1.46023 1.47596 1.55710 1.61972 1.96821 2.56203 2.87516 3.35454 3.46130 3.55994 3.67217 3.77784 3.85400 3.95804 4.03590 4.08690 4.10564 4.25188 4.30043 4.32990 4.38471 4.47873 4.49356 4.50167 4.53674 4.63101 4.64057 4.67313 4.71660 4.74628 4.75492 4.85736 4.95227 5.02421 5.07543 5.07958 5.11566 5.15668 5.20169 5.23740 5.30413 5.39058 5.43644 5.49384 5.54641 5.59548 5.63339 5.65142 5.75296 6.15234 6.28823 6.61419 7.15418 7.34131 8.12416 8.33542 9.29980 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016691 B = 0.002343 C = 0.002252 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1677.150696 B =11948.591384 C =12431.207337 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.089 4.089 3 C -0.079 4.079 4 C -0.134 4.134 5 C -0.125 4.125 6 C -0.135 4.135 7 C -0.119 4.119 8 C -0.082 4.082 9 C -0.090 4.090 10 C 0.529 3.471 11 O -0.587 6.587 12 N -0.624 5.624 13 C 0.105 3.895 14 C -0.093 4.093 15 H 0.099 0.901 16 C -0.101 4.101 17 C -0.138 4.138 18 C 0.175 3.825 19 H 0.050 0.950 20 N -0.736 5.736 21 C -0.233 4.233 22 H 0.076 0.924 23 C -0.080 4.080 24 N -0.972 5.972 25 Si 0.969 3.031 26 H -0.286 1.286 27 H -0.299 1.299 28 H -0.269 1.269 29 C -0.100 4.100 30 H 0.062 0.938 31 C 0.117 3.883 32 H 0.065 0.935 33 H 0.061 0.939 34 H 0.066 0.934 35 H 0.069 0.931 36 H 0.052 0.948 37 H 0.132 0.868 38 H 0.141 0.859 39 H 0.140 0.860 40 H 0.133 0.867 41 H 0.123 0.877 42 H 0.129 0.871 43 H 0.096 0.904 44 H 0.113 0.887 45 H 0.086 0.914 46 H 0.086 0.914 47 H 0.053 0.947 48 H 0.046 0.954 49 H 0.370 0.630 50 H 0.249 0.751 51 H 0.043 0.957 52 H 0.075 0.925 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.683 20.668 -10.485 29.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C -0.126 4.126 3 C -0.079 4.079 4 C -0.152 4.152 5 C -0.143 4.143 6 C -0.153 4.153 7 C -0.137 4.137 8 C -0.082 4.082 9 C -0.129 4.129 10 C 0.320 3.680 11 O -0.467 6.467 12 N -0.358 5.358 13 C -0.016 4.016 14 C -0.112 4.112 15 H 0.117 0.883 16 C -0.139 4.139 17 C -0.178 4.178 18 C 0.066 3.934 19 H 0.068 0.932 20 N -0.375 5.375 21 C -0.365 4.365 22 H 0.094 0.906 23 C -0.271 4.271 24 N -0.623 5.623 25 Si 0.799 3.201 26 H -0.213 1.213 27 H -0.226 1.226 28 H -0.194 1.194 29 C -0.121 4.121 30 H 0.081 0.919 31 C -0.006 4.006 32 H 0.084 0.916 33 H 0.080 0.920 34 H 0.085 0.915 35 H 0.088 0.912 36 H 0.071 0.929 37 H 0.150 0.850 38 H 0.158 0.842 39 H 0.158 0.842 40 H 0.151 0.849 41 H 0.141 0.859 42 H 0.147 0.853 43 H 0.114 0.886 44 H 0.132 0.868 45 H 0.104 0.896 46 H 0.104 0.896 47 H 0.072 0.928 48 H 0.065 0.935 49 H 0.202 0.798 50 H 0.058 0.942 51 H 0.062 0.938 52 H 0.093 0.907 Dipole moment (debyes) X Y Z Total from point charges -18.026 20.783 -10.765 29.543 hybrid contribution 1.580 -1.213 0.322 2.018 sum -16.447 19.569 -10.443 27.614 Atomic orbital electron populations 1.21731 0.92673 1.02569 1.02748 1.20563 0.97660 0.92191 1.02181 1.19927 0.98655 0.96181 0.93159 1.21256 1.00314 0.95820 0.97773 1.21428 0.99125 0.94705 0.99042 1.21387 1.00456 1.01026 0.92437 1.21264 0.98647 0.94593 0.99161 1.19354 1.00779 0.94482 0.93606 1.20736 0.95998 1.00253 0.95904 1.20840 0.89790 0.78786 0.78570 1.90720 1.33765 1.64935 1.57267 1.49331 1.16698 1.47892 1.21830 1.23010 0.89045 0.95942 0.93586 1.22767 0.94465 0.95901 0.98094 0.88256 1.22356 0.99337 0.99227 0.92983 1.23037 0.96587 0.98784 0.99436 1.21346 0.90421 0.88684 0.92944 0.93160 1.42677 1.43551 1.26385 1.24925 1.19613 1.11600 1.05202 1.00112 0.90571 1.25540 1.02770 0.98265 1.00574 1.69814 1.43959 1.15720 1.32833 0.85191 0.78344 0.77867 0.78710 1.21331 1.22611 1.19428 1.22805 0.96264 0.96116 0.96870 0.91902 1.22367 0.91146 0.90894 0.96169 0.91647 0.91976 0.91494 0.91249 0.92926 0.85011 0.84159 0.84200 0.84940 0.85877 0.85271 0.88640 0.86841 0.89562 0.89570 0.92815 0.93542 0.79837 0.94212 0.93811 0.90719 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.91 9.72 71.98 0.70 -1.21 16 2 C -0.09 -1.74 5.38 29.85 0.16 -1.58 16 3 C -0.08 -1.72 5.13 -19.87 -0.10 -1.82 16 4 C -0.13 -2.67 9.68 22.27 0.22 -2.45 16 5 C -0.13 -2.26 10.05 22.27 0.22 -2.04 16 6 C -0.14 -2.47 10.05 22.27 0.22 -2.24 16 7 C -0.12 -2.36 9.68 22.27 0.22 -2.15 16 8 C -0.08 -1.75 4.37 -19.86 -0.09 -1.84 16 9 C -0.09 -1.59 4.15 29.10 0.12 -1.47 16 10 C 0.53 14.43 7.12 87.66 0.62 15.05 16 11 O -0.59 -22.30 16.32 -3.02 -0.05 -22.35 16 12 N -0.62 -15.60 3.31 -806.62 -2.67 -18.28 16 13 C 0.11 1.68 6.46 86.52 0.56 2.24 16 14 C -0.09 -1.91 3.96 -9.12 -0.04 -1.95 16 15 H 0.10 1.84 8.14 -2.39 -0.02 1.82 16 16 C -0.10 -1.99 6.36 31.61 0.20 -1.79 16 17 C -0.14 -4.32 6.57 31.85 0.21 -4.11 16 18 C 0.17 6.53 3.03 45.90 0.14 6.67 16 19 H 0.05 1.92 7.15 -2.39 -0.02 1.90 16 20 N -0.74 -36.98 5.22 -318.66 -1.66 -38.65 16 21 C -0.23 -12.93 9.97 84.04 0.84 -12.09 16 22 H 0.08 4.04 7.83 -2.91 -0.02 4.01 16 23 C -0.08 -4.63 5.50 84.87 0.47 -4.16 16 24 N -0.97 -60.62 13.06 21.65 0.28 -60.34 16 25 Si 0.97 46.75 29.55 68.60 2.03 48.78 16 26 H -0.29 -13.48 7.11 99.48 0.71 -12.78 16 27 H -0.30 -14.68 7.11 99.48 0.71 -13.97 16 28 H -0.27 -12.26 7.11 99.48 0.71 -11.55 16 29 C -0.10 -3.14 3.62 -9.22 -0.03 -3.18 16 30 H 0.06 2.29 7.80 -2.39 -0.02 2.27 16 31 C 0.12 3.74 6.58 86.53 0.57 4.31 16 32 H 0.06 0.76 6.80 -2.39 -0.02 0.74 16 33 H 0.06 0.78 8.14 -2.39 -0.02 0.76 16 34 H 0.07 0.81 8.14 -2.39 -0.02 0.79 16 35 H 0.07 1.35 8.05 -2.39 -0.02 1.33 16 36 H 0.05 1.23 6.42 -2.39 -0.02 1.21 16 37 H 0.13 2.15 8.06 -2.91 -0.02 2.12 16 38 H 0.14 1.81 8.06 -2.91 -0.02 1.79 16 39 H 0.14 1.85 8.06 -2.91 -0.02 1.83 16 40 H 0.13 2.13 8.06 -2.91 -0.02 2.11 16 41 H 0.12 1.66 5.47 -2.39 -0.01 1.64 16 42 H 0.13 1.49 8.05 -2.39 -0.02 1.47 16 43 H 0.10 1.24 7.20 -2.39 -0.02 1.23 16 44 H 0.11 1.01 7.32 -2.39 -0.02 0.99 16 45 H 0.09 1.39 7.18 -2.39 -0.02 1.37 16 46 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 47 H 0.05 1.72 8.14 -2.39 -0.02 1.70 16 48 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 49 H 0.37 20.34 7.58 -92.70 -0.70 19.64 16 50 H 0.25 15.13 8.31 -92.71 -0.77 14.36 16 51 H 0.04 1.70 7.88 -2.39 -0.02 1.68 16 52 H 0.07 2.34 7.21 -2.39 -0.02 2.33 16 Total: -1.00 -76.25 407.50 3.34 -72.91 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: 0.21 Total: 33.74 kcal Atomic # 6 Polarization: -21.02 SS G_CDS: 5.21 Total: -15.81 kcal Atomic # 7 Polarization: -113.21 SS G_CDS: -4.05 Total: -117.26 kcal Atomic # 8 Polarization: -22.30 SS G_CDS: -0.05 Total: -22.35 kcal Atomic # 14 Polarization: 46.75 SS G_CDS: 2.03 Total: 48.78 kcal Total: -76.25 3.34 -72.91 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026294789.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.169 kcal (2) G-P(sol) polarization free energy of solvation -76.253 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -29.084 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.340 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.913 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.745 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds