Wall clock time and date at job start Wed Apr 1 2020 02:59:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.47001 * 2 1 4 4 C 1.38253 * 120.00170 * 270.02141 * 3 2 1 5 5 C 1.38207 * 120.00179 * 179.97438 * 4 3 2 6 6 C 1.38261 * 119.99881 * 359.74503 * 5 4 3 7 7 C 1.38211 * 119.99740 * 0.50926 * 6 5 4 8 8 C 1.50703 * 120.00149 * 179.76581 * 7 6 5 9 9 C 1.50706 * 109.47008 * 269.73032 * 8 7 6 10 10 O 1.21281 * 119.99666 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00045 * 179.97438 * 9 8 7 12 12 C 1.49219 * 126.05416 * 359.95504 * 11 9 8 13 13 C 1.50343 * 104.85299 * 172.96951 * 12 11 9 14 14 H 1.09005 * 110.05198 * 279.54445 * 13 12 11 15 15 C 1.50996 * 125.57803 * 144.33962 * 13 12 11 16 16 C 1.56403 * 101.60039 * 203.97289 * 15 13 12 17 17 C 1.55940 * 105.78536 * 25.01315 * 16 15 13 18 18 H 1.08996 * 110.49517 * 248.73374 * 17 16 15 19 19 N 1.46499 * 110.49053 * 126.20880 * 17 16 15 20 20 C 1.36943 * 119.99804 * 86.45176 * 19 17 16 21 21 H 1.08000 * 119.99944 * 0.02562 * 20 19 17 22 22 C 1.38813 * 119.99706 * 179.97438 * 20 19 17 23 23 N 1.31618 * 119.99747 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00385 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47193 * 89.99289 * 24 22 20 26 26 H 1.48492 * 109.47183 * 209.99586 * 24 22 20 27 27 H 1.48498 * 109.46995 * 329.99609 * 24 22 20 28 28 C 1.50027 * 104.31445 * 7.64007 * 17 16 15 29 29 H 1.08993 * 109.60298 * 80.23364 * 28 17 16 30 30 C 1.49693 * 126.05834 * 179.97438 * 11 9 8 31 31 C 1.38213 * 119.99652 * 90.00684 * 3 2 1 32 32 H 1.09002 * 109.47177 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46811 * 300.00078 * 1 2 3 34 34 H 1.09001 * 109.46973 * 59.99455 * 1 2 3 35 35 H 1.08997 * 109.46546 * 239.99926 * 2 1 3 36 36 H 1.09001 * 109.46973 * 120.00545 * 2 1 3 37 37 H 1.07997 * 119.99910 * 0.02562 * 4 3 2 38 38 H 1.07995 * 120.00176 * 180.02562 * 5 4 3 39 39 H 1.08000 * 120.00178 * 180.27957 * 6 5 4 40 40 H 1.08997 * 109.47192 * 149.72892 * 8 7 6 41 41 H 1.09004 * 109.46703 * 29.72338 * 8 7 6 42 42 H 1.08998 * 110.35893 * 291.80914 * 12 11 9 43 43 H 1.08997 * 110.36368 * 54.01806 * 12 11 9 44 44 H 1.09001 * 111.00239 * 322.05216 * 15 13 12 45 45 H 1.08997 * 111.00468 * 85.85108 * 15 13 12 46 46 H 1.08999 * 110.18468 * 144.09463 * 16 15 13 47 47 H 1.08995 * 110.18429 * 265.93400 * 16 15 13 48 48 H 0.97005 * 120.00261 * 266.45134 * 19 17 16 49 49 H 0.97003 * 119.99872 * 180.02562 * 23 22 20 50 50 H 1.09002 * 110.84626 * 273.02142 * 30 11 9 51 51 H 1.08998 * 110.84673 * 36.43285 * 30 11 9 52 52 H 1.07993 * 120.00121 * 359.97438 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0728 -1.1973 5 6 2.7225 3.3760 -1.1973 6 6 2.9478 4.0295 0.0001 7 6 2.7229 3.3760 1.1970 8 6 2.9735 4.0866 2.5022 9 6 4.3969 3.8504 2.9375 10 8 5.1349 3.1716 2.2552 11 7 4.8496 4.3936 4.0848 12 6 4.0632 5.2473 5.0226 13 6 4.9613 5.4409 6.2127 14 1 4.9155 4.5664 6.8617 15 6 5.0595 6.6976 7.0440 16 6 6.4930 6.5599 7.6542 17 6 7.2891 5.6530 6.6665 18 1 7.5037 4.6872 7.1238 19 7 8.5313 6.3110 6.2539 20 6 9.6615 6.1795 7.0159 21 1 9.6372 5.5903 7.9207 22 6 10.8387 6.8025 6.6246 23 7 11.9248 6.6765 7.3572 24 14 10.8809 7.8209 5.0592 25 1 10.5322 9.2293 5.3754 26 1 12.2434 7.7682 4.4711 27 1 9.9005 7.2746 4.0868 28 6 6.3709 5.4888 5.4914 29 1 6.4314 6.3709 4.8540 30 6 6.2305 4.2478 4.6440 31 6 2.2628 2.0723 1.1970 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8899 37 1 2.0817 1.5639 -2.1326 38 1 2.9018 3.8854 -2.1325 39 1 3.3031 5.0494 0.0001 40 1 2.2928 3.7022 3.2617 41 1 2.8061 5.1558 2.3717 42 1 3.8343 6.2074 4.5601 43 1 3.1445 4.7403 5.3173 44 1 4.9852 7.5869 6.4180 45 1 4.3007 6.7088 7.8263 46 1 6.9653 7.5393 7.7295 47 1 6.4401 6.0905 8.6364 48 1 8.5532 6.8398 5.4410 49 1 12.7473 7.1122 7.0840 50 1 6.3083 3.3491 5.2559 51 1 6.9730 4.2370 3.8460 52 1 2.0825 1.5632 2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026298274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:55 Heat of formation + Delta-G solvation = 8.229904 kcal Electronic energy + Delta-G solvation = -29364.073917 eV Core-core repulsion = 25521.465975 eV Total energy + Delta-G solvation = -3842.607942 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.70053 -39.80819 -38.47649 -35.46513 -34.67848 -33.47134 -32.66050 -31.20488 -30.11710 -29.63484 -28.81539 -27.48745 -25.63253 -24.20828 -23.42621 -22.60047 -22.12878 -20.75177 -20.36584 -19.30159 -19.07961 -17.63927 -16.88055 -16.76886 -16.39956 -16.02644 -15.31589 -15.21935 -14.75488 -14.67678 -14.32143 -14.11865 -14.02915 -13.73287 -13.58687 -13.35178 -13.15225 -12.99894 -12.68479 -12.51973 -12.36343 -12.17751 -11.99947 -11.97367 -11.89780 -11.60280 -11.51279 -11.17865 -11.09848 -11.00553 -10.86132 -10.84141 -10.52902 -10.42259 -10.05588 -9.94671 -9.75841 -9.58422 -8.96452 -8.94270 -8.77806 -8.69419 -7.29726 -5.78891 -3.14898 1.14920 1.23656 2.62197 2.82015 3.36588 3.39814 3.44950 3.58428 4.00298 4.38180 4.45592 4.57474 4.58661 4.62309 4.70909 4.84450 4.90909 4.98766 5.01796 5.04789 5.14131 5.17619 5.20963 5.23544 5.31953 5.33460 5.39959 5.44965 5.49617 5.58243 5.59033 5.59973 5.67986 5.75454 5.80658 5.87830 5.88701 5.93024 5.94751 6.01755 6.10222 6.15791 6.23027 6.28795 6.33981 6.38334 6.43419 6.50750 6.68522 6.83441 6.92115 7.47382 7.97009 8.14304 8.40278 9.17994 9.90699 10.09724 11.39274 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.002197 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.481319 B =12740.931397 C =13542.749012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.109 4.109 7 C -0.061 4.061 8 C -0.098 4.098 9 C 0.528 3.472 10 O -0.533 6.533 11 N -0.627 5.627 12 C 0.121 3.879 13 C -0.128 4.128 14 H 0.084 0.916 15 C -0.098 4.098 16 C -0.142 4.142 17 C 0.201 3.799 18 H 0.062 0.938 19 N -0.745 5.745 20 C -0.245 4.245 21 H 0.091 0.909 22 C 0.005 3.995 23 N -0.933 5.933 24 Si 0.883 3.117 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.277 1.277 28 C -0.122 4.122 29 H 0.079 0.921 30 C 0.129 3.871 31 C -0.102 4.102 32 H 0.057 0.943 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.119 0.881 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.071 0.929 44 H 0.065 0.935 45 H 0.062 0.938 46 H 0.075 0.925 47 H 0.059 0.941 48 H 0.361 0.639 49 H 0.259 0.741 50 H 0.072 0.928 51 H 0.081 0.919 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -27.467 -7.034 -11.667 30.660 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.128 4.128 7 C -0.061 4.061 8 C -0.137 4.137 9 C 0.317 3.683 10 O -0.409 6.409 11 N -0.363 5.363 12 C -0.001 4.001 13 C -0.148 4.148 14 H 0.102 0.898 15 C -0.136 4.136 16 C -0.183 4.183 17 C 0.090 3.910 18 H 0.080 0.920 19 N -0.387 5.387 20 C -0.374 4.374 21 H 0.109 0.891 22 C -0.191 4.191 23 N -0.580 5.580 24 Si 0.713 3.287 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.203 1.203 28 C -0.142 4.142 29 H 0.097 0.903 30 C 0.008 3.992 31 C -0.120 4.120 32 H 0.076 0.924 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.090 0.910 37 H 0.137 0.863 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.087 0.913 43 H 0.090 0.910 44 H 0.083 0.917 45 H 0.081 0.919 46 H 0.093 0.907 47 H 0.078 0.922 48 H 0.194 0.806 49 H 0.069 0.931 50 H 0.091 0.909 51 H 0.099 0.901 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -26.897 -7.522 -11.953 30.380 hybrid contribution 0.268 0.921 -1.020 1.400 sum -26.629 -6.601 -12.973 30.348 Atomic orbital electron populations 1.21747 0.94753 1.01642 1.02153 1.20544 0.96086 0.92726 1.02940 1.19823 0.99219 0.96104 0.93083 1.20984 1.00403 0.95000 0.97390 1.21067 0.99516 0.94971 0.97847 1.20964 0.99735 1.00037 0.92020 1.19264 0.98864 0.94390 0.93619 1.20657 0.94576 1.02416 0.96076 1.20139 0.89307 0.79379 0.79514 1.90747 1.58259 1.38797 1.53084 1.49905 1.13455 1.51091 1.21899 1.21270 0.94194 0.94710 0.89921 1.22269 0.95839 1.00690 0.95978 0.89788 1.21753 0.98141 0.95492 0.98210 1.23749 0.93222 1.02144 0.99158 1.20013 0.85003 0.95224 0.90731 0.91955 1.42869 1.07254 1.60625 1.27934 1.19070 0.86704 1.26844 1.04815 0.89131 1.24676 0.95671 1.00448 0.98257 1.69699 1.00774 1.48218 1.39315 0.86573 0.76932 0.80744 0.84428 1.21124 1.21733 1.20334 1.22554 0.96130 0.98018 0.97525 0.90275 1.21480 0.82671 0.97707 0.97359 1.20814 0.99731 0.93881 0.97589 0.92441 0.92560 0.92616 0.91058 0.91009 0.86334 0.86110 0.86327 0.88133 0.88087 0.91255 0.91044 0.91664 0.91912 0.90652 0.92188 0.80565 0.93051 0.90947 0.90089 0.86410 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.54 16 2 C -0.09 -0.65 6.06 -27.88 -0.17 -0.81 16 3 C -0.08 -0.80 5.13 -104.63 -0.54 -1.34 16 4 C -0.12 -1.14 9.70 -39.59 -0.38 -1.52 16 5 C -0.12 -1.14 10.05 -39.58 -0.40 -1.54 16 6 C -0.11 -1.18 9.70 -39.58 -0.38 -1.56 16 7 C -0.06 -0.67 4.37 -104.62 -0.46 -1.13 16 8 C -0.10 -0.93 5.07 -29.03 -0.15 -1.08 16 9 C 0.53 7.18 7.87 -10.98 -0.09 7.10 16 10 O -0.53 -9.59 16.36 5.56 0.09 -9.50 16 11 N -0.63 -7.98 3.43 -171.55 -0.59 -8.56 16 12 C 0.12 1.16 6.42 -3.86 -0.02 1.13 16 13 C -0.13 -1.43 2.77 -89.97 -0.25 -1.68 16 14 H 0.08 0.93 8.14 -51.93 -0.42 0.51 16 15 C -0.10 -1.11 6.72 -25.91 -0.17 -1.28 16 16 C -0.14 -2.18 6.74 -23.33 -0.16 -2.33 16 17 C 0.20 3.57 3.38 -67.84 -0.23 3.34 16 18 H 0.06 1.16 8.11 -51.93 -0.42 0.74 16 19 N -0.74 -16.92 4.92 -53.33 -0.26 -17.19 16 20 C -0.24 -6.72 10.46 -15.06 -0.16 -6.87 16 21 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 22 C 0.01 0.16 5.50 -17.43 -0.10 0.06 16 23 N -0.93 -29.07 13.97 55.49 0.78 -28.29 16 24 Si 0.88 22.08 27.74 -169.99 -4.71 17.36 16 25 H -0.28 -7.04 7.11 56.52 0.40 -6.63 16 26 H -0.29 -7.43 7.11 56.52 0.40 -7.03 16 27 H -0.28 -6.59 6.52 56.52 0.37 -6.22 16 28 C -0.12 -1.80 2.44 -90.15 -0.22 -2.02 16 29 H 0.08 1.24 7.89 -51.93 -0.41 0.83 16 30 C 0.13 1.91 6.79 -3.30 -0.02 1.89 16 31 C -0.10 -1.08 9.36 -39.58 -0.37 -1.45 16 32 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 33 H 0.06 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.05 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 36 H 0.07 0.53 8.09 -51.93 -0.42 0.11 16 37 H 0.12 0.88 8.06 -52.49 -0.42 0.46 16 38 H 0.12 0.94 8.06 -52.49 -0.42 0.51 16 39 H 0.12 1.13 8.06 -52.49 -0.42 0.71 16 40 H 0.10 0.73 8.09 -51.93 -0.42 0.31 16 41 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 42 H 0.07 0.59 8.14 -51.93 -0.42 0.17 16 43 H 0.07 0.52 8.14 -51.93 -0.42 0.10 16 44 H 0.06 0.73 8.14 -51.93 -0.42 0.30 16 45 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 46 H 0.07 1.31 7.98 -51.93 -0.41 0.90 16 47 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 48 H 0.36 8.20 5.48 -40.82 -0.22 7.98 16 49 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 50 H 0.07 1.05 8.14 -51.93 -0.42 0.62 16 51 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 52 H 0.12 1.10 8.06 -52.49 -0.42 0.67 16 LS Contribution 415.48 15.07 6.26 6.26 Total: -1.00 -33.74 415.48 -11.41 -45.16 By element: Atomic # 1 Polarization: 15.48 SS G_CDS: -9.08 Total: 6.40 kcal Atomic # 6 Polarization: -7.74 SS G_CDS: -3.90 Total: -11.63 kcal Atomic # 7 Polarization: -53.97 SS G_CDS: -0.08 Total: -54.04 kcal Atomic # 8 Polarization: -9.59 SS G_CDS: 0.09 Total: -9.50 kcal Atomic # 14 Polarization: 22.08 SS G_CDS: -4.71 Total: 17.36 kcal Total LS contribution 6.26 Total: 6.26 kcal Total: -33.74 -11.41 -45.16 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026298274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.387 kcal (2) G-P(sol) polarization free energy of solvation -33.744 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.643 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.413 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.157 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.230 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds