Wall clock time and date at job start Wed Apr 1 2020 02:59:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50701 * 109.47001 * 2 1 4 4 C 1.38253 * 120.00170 * 270.02141 * 3 2 1 5 5 C 1.38207 * 120.00179 * 179.97438 * 4 3 2 6 6 C 1.38261 * 119.99881 * 359.74503 * 5 4 3 7 7 C 1.38211 * 119.99740 * 0.50926 * 6 5 4 8 8 C 1.50703 * 120.00149 * 179.76581 * 7 6 5 9 9 C 1.50706 * 109.47008 * 269.73032 * 8 7 6 10 10 O 1.21281 * 119.99666 * 359.97438 * 9 8 7 11 11 N 1.34777 * 120.00045 * 179.97438 * 9 8 7 12 12 C 1.49219 * 126.05416 * 359.95504 * 11 9 8 13 13 C 1.50343 * 104.85299 * 172.96951 * 12 11 9 14 14 H 1.09005 * 110.05198 * 279.54445 * 13 12 11 15 15 C 1.50996 * 125.57803 * 144.33962 * 13 12 11 16 16 C 1.56403 * 101.60039 * 203.97289 * 15 13 12 17 17 C 1.55940 * 105.78536 * 25.01315 * 16 15 13 18 18 H 1.08996 * 110.49517 * 248.73374 * 17 16 15 19 19 N 1.46499 * 110.49053 * 126.20880 * 17 16 15 20 20 C 1.36943 * 119.99804 * 86.45176 * 19 17 16 21 21 H 1.08000 * 119.99944 * 0.02562 * 20 19 17 22 22 C 1.38813 * 119.99706 * 179.97438 * 20 19 17 23 23 N 1.31618 * 119.99747 * 179.97438 * 22 20 19 24 24 Si 1.86798 * 120.00385 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.47193 * 89.99289 * 24 22 20 26 26 H 1.48492 * 109.47183 * 209.99586 * 24 22 20 27 27 H 1.48498 * 109.46995 * 329.99609 * 24 22 20 28 28 C 1.50027 * 104.31445 * 7.64007 * 17 16 15 29 29 H 1.08993 * 109.60298 * 80.23364 * 28 17 16 30 30 C 1.49693 * 126.05834 * 179.97438 * 11 9 8 31 31 C 1.38213 * 119.99652 * 90.00684 * 3 2 1 32 32 H 1.09002 * 109.47177 * 179.97438 * 1 2 3 33 33 H 1.09006 * 109.46811 * 300.00078 * 1 2 3 34 34 H 1.09001 * 109.46973 * 59.99455 * 1 2 3 35 35 H 1.08997 * 109.46546 * 239.99926 * 2 1 3 36 36 H 1.09001 * 109.46973 * 120.00545 * 2 1 3 37 37 H 1.07997 * 119.99910 * 0.02562 * 4 3 2 38 38 H 1.07995 * 120.00176 * 180.02562 * 5 4 3 39 39 H 1.08000 * 120.00178 * 180.27957 * 6 5 4 40 40 H 1.08997 * 109.47192 * 149.72892 * 8 7 6 41 41 H 1.09004 * 109.46703 * 29.72338 * 8 7 6 42 42 H 1.08998 * 110.35893 * 291.80914 * 12 11 9 43 43 H 1.08997 * 110.36368 * 54.01806 * 12 11 9 44 44 H 1.09001 * 111.00239 * 322.05216 * 15 13 12 45 45 H 1.08997 * 111.00468 * 85.85108 * 15 13 12 46 46 H 1.08999 * 110.18468 * 144.09463 * 16 15 13 47 47 H 1.08995 * 110.18429 * 265.93400 * 16 15 13 48 48 H 0.97005 * 120.00261 * 266.45134 * 19 17 16 49 49 H 0.97003 * 119.99872 * 180.02562 * 23 22 20 50 50 H 1.09002 * 110.84626 * 273.02142 * 30 11 9 51 51 H 1.08998 * 110.84673 * 36.43285 * 30 11 9 52 52 H 1.07993 * 120.00121 * 359.97438 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0324 1.4208 0.0000 4 6 2.2624 2.0728 -1.1973 5 6 2.7225 3.3760 -1.1973 6 6 2.9478 4.0295 0.0001 7 6 2.7229 3.3760 1.1970 8 6 2.9735 4.0866 2.5022 9 6 4.3969 3.8504 2.9375 10 8 5.1349 3.1716 2.2552 11 7 4.8496 4.3936 4.0848 12 6 4.0632 5.2473 5.0226 13 6 4.9613 5.4409 6.2127 14 1 4.9155 4.5664 6.8617 15 6 5.0595 6.6976 7.0440 16 6 6.4930 6.5599 7.6542 17 6 7.2891 5.6530 6.6665 18 1 7.5037 4.6872 7.1238 19 7 8.5313 6.3110 6.2539 20 6 9.6615 6.1795 7.0159 21 1 9.6372 5.5903 7.9207 22 6 10.8387 6.8025 6.6246 23 7 11.9248 6.6765 7.3572 24 14 10.8809 7.8209 5.0592 25 1 10.5322 9.2293 5.3754 26 1 12.2434 7.7682 4.4711 27 1 9.9005 7.2746 4.0868 28 6 6.3709 5.4888 5.4914 29 1 6.4314 6.3709 4.8540 30 6 6.2305 4.2478 4.6440 31 6 2.2628 2.0723 1.1970 32 1 -0.3633 -1.0277 -0.0005 33 1 -0.3633 0.5139 0.8900 34 1 -0.3633 0.5139 -0.8899 35 1 1.8933 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8899 37 1 2.0817 1.5639 -2.1326 38 1 2.9018 3.8854 -2.1325 39 1 3.3031 5.0494 0.0001 40 1 2.2928 3.7022 3.2617 41 1 2.8061 5.1558 2.3717 42 1 3.8343 6.2074 4.5601 43 1 3.1445 4.7403 5.3173 44 1 4.9852 7.5869 6.4180 45 1 4.3007 6.7088 7.8263 46 1 6.9653 7.5393 7.7295 47 1 6.4401 6.0905 8.6364 48 1 8.5532 6.8398 5.4410 49 1 12.7473 7.1122 7.0840 50 1 6.3083 3.3491 5.2559 51 1 6.9730 4.2370 3.8460 52 1 2.0825 1.5632 2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026298274.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:59:53 Heat of formation + Delta-G solvation = -10.666506 kcal Electronic energy + Delta-G solvation = -29364.893327 eV Core-core repulsion = 25521.465975 eV Total energy + Delta-G solvation = -3843.427352 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.39 seconds Orbital eigenvalues (eV) -41.74708 -40.63381 -39.50433 -36.88920 -35.33475 -35.09741 -33.41038 -33.08029 -31.15846 -30.35844 -30.02199 -28.33344 -27.02149 -24.80917 -24.65279 -24.23961 -22.90826 -21.56937 -21.45816 -20.55938 -20.04924 -19.54942 -17.86826 -17.75183 -17.30787 -16.89400 -16.52817 -16.20718 -16.00417 -15.85206 -15.61476 -15.06120 -15.01083 -14.68100 -14.49458 -14.45388 -14.35408 -14.03369 -13.83962 -13.60426 -13.47712 -13.24075 -13.12575 -12.93137 -12.82668 -12.62827 -12.59561 -12.34124 -12.30461 -12.14583 -12.12583 -11.84619 -11.70326 -11.64230 -11.59012 -11.39818 -11.06073 -11.01031 -10.84617 -9.72389 -9.68743 -9.50454 -9.30033 -8.03270 -5.35580 0.40812 0.50598 1.34871 1.37713 1.44555 1.62937 1.85374 2.46252 2.82978 2.95766 3.29172 3.52556 3.63076 3.73833 3.82671 3.93384 3.98012 4.00012 4.16444 4.22374 4.27823 4.28727 4.36263 4.43320 4.49721 4.51040 4.54605 4.56871 4.59807 4.68849 4.69289 4.70832 4.76356 4.78304 4.92378 4.94558 5.00452 5.08716 5.09173 5.17664 5.19890 5.22490 5.24325 5.35188 5.38465 5.53057 5.54417 5.56971 5.65710 5.72604 5.78663 6.13569 6.21818 6.51179 7.07221 7.13951 7.84659 8.01946 9.18305 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016648 B = 0.002197 C = 0.002067 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1681.481319 B =12740.931397 C =13542.749012 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.092 4.092 4 C -0.130 4.130 5 C -0.127 4.127 6 C -0.129 4.129 7 C -0.077 4.077 8 C -0.086 4.086 9 C 0.524 3.476 10 O -0.588 6.588 11 N -0.625 5.625 12 C 0.122 3.878 13 C -0.106 4.106 14 H 0.088 0.912 15 C -0.082 4.082 16 C -0.139 4.139 17 C 0.189 3.811 18 H 0.046 0.954 19 N -0.750 5.750 20 C -0.224 4.224 21 H 0.059 0.941 22 C -0.066 4.066 23 N -0.983 5.983 24 Si 0.952 3.048 25 H -0.275 1.275 26 H -0.299 1.299 27 H -0.259 1.259 28 C -0.126 4.126 29 H 0.074 0.926 30 C 0.128 3.872 31 C -0.118 4.118 32 H 0.069 0.931 33 H 0.054 0.946 34 H 0.055 0.945 35 H 0.077 0.923 36 H 0.070 0.930 37 H 0.136 0.864 38 H 0.137 0.863 39 H 0.126 0.874 40 H 0.130 0.870 41 H 0.126 0.874 42 H 0.091 0.909 43 H 0.109 0.891 44 H 0.075 0.925 45 H 0.094 0.906 46 H 0.052 0.948 47 H 0.063 0.937 48 H 0.363 0.637 49 H 0.256 0.744 50 H 0.070 0.930 51 H 0.048 0.952 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -31.558 -6.336 -12.591 34.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.148 4.148 5 C -0.144 4.144 6 C -0.147 4.147 7 C -0.077 4.077 8 C -0.125 4.125 9 C 0.314 3.686 10 O -0.468 6.468 11 N -0.360 5.360 12 C 0.001 3.999 13 C -0.125 4.125 14 H 0.107 0.893 15 C -0.120 4.120 16 C -0.179 4.179 17 C 0.080 3.920 18 H 0.064 0.936 19 N -0.393 5.393 20 C -0.355 4.355 21 H 0.077 0.923 22 C -0.257 4.257 23 N -0.634 5.634 24 Si 0.780 3.220 25 H -0.201 1.201 26 H -0.226 1.226 27 H -0.184 1.184 28 C -0.146 4.146 29 H 0.093 0.907 30 C 0.006 3.994 31 C -0.136 4.136 32 H 0.088 0.912 33 H 0.073 0.927 34 H 0.074 0.926 35 H 0.095 0.905 36 H 0.089 0.911 37 H 0.154 0.846 38 H 0.155 0.845 39 H 0.143 0.857 40 H 0.148 0.852 41 H 0.144 0.856 42 H 0.109 0.891 43 H 0.127 0.873 44 H 0.093 0.907 45 H 0.112 0.888 46 H 0.070 0.930 47 H 0.081 0.919 48 H 0.196 0.804 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.067 0.933 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -31.087 -6.813 -12.859 34.325 hybrid contribution 1.533 0.586 -0.662 1.769 sum -29.555 -6.227 -13.521 33.092 Atomic orbital electron populations 1.21713 0.93633 1.02419 1.02086 1.20585 0.97011 0.91505 1.03182 1.20147 0.98853 0.97105 0.93075 1.21278 1.00184 0.95126 0.98189 1.21370 0.99255 0.95349 0.98467 1.21213 1.00265 1.00687 0.92501 1.19516 0.99053 0.94794 0.94375 1.20692 0.91797 1.03987 0.96063 1.20918 0.90549 0.78241 0.78869 1.90723 1.60013 1.41316 1.54752 1.49945 1.12614 1.51175 1.22235 1.21535 0.94377 0.95710 0.88245 1.22258 0.93141 1.00903 0.96209 0.89336 1.21660 0.95589 0.95826 0.98917 1.23576 0.95588 0.99935 0.98834 1.20297 0.84054 0.94625 0.92976 0.93611 1.42911 1.07666 1.61186 1.27518 1.19040 0.88220 1.24554 1.03693 0.92314 1.25461 0.95443 1.02749 1.02032 1.69876 1.01503 1.50376 1.41680 0.85452 0.76696 0.79326 0.80542 1.20137 1.22607 1.18424 1.22312 0.97966 0.97554 0.96768 0.90731 1.21295 0.83846 0.97842 0.96392 1.21052 1.00181 0.94131 0.98283 0.91238 0.92734 0.92559 0.90461 0.91132 0.84612 0.84495 0.85652 0.85177 0.85554 0.89054 0.87268 0.90677 0.88788 0.92953 0.91863 0.80382 0.93477 0.91160 0.93322 0.85655 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.51 9.89 71.98 0.71 -0.80 16 2 C -0.09 -1.18 6.06 29.85 0.18 -1.00 16 3 C -0.09 -1.70 5.13 -19.87 -0.10 -1.80 16 4 C -0.13 -2.33 9.70 22.27 0.22 -2.11 16 5 C -0.13 -2.36 10.05 22.27 0.22 -2.14 16 6 C -0.13 -2.61 9.70 22.27 0.22 -2.40 16 7 C -0.08 -1.56 4.37 -19.87 -0.09 -1.65 16 8 C -0.09 -1.37 5.07 29.10 0.15 -1.22 16 9 C 0.52 13.32 7.87 87.66 0.69 14.01 16 10 O -0.59 -21.27 16.36 -3.03 -0.05 -21.32 16 11 N -0.62 -14.39 3.43 -815.04 -2.79 -17.18 16 12 C 0.12 1.72 6.42 84.99 0.55 2.27 16 13 C -0.11 -1.95 2.77 -10.37 -0.03 -1.97 16 14 H 0.09 1.61 8.14 -2.38 -0.02 1.59 16 15 C -0.08 -1.52 6.72 31.13 0.21 -1.31 16 16 C -0.14 -4.06 6.74 32.80 0.22 -3.84 16 17 C 0.19 6.70 3.38 45.05 0.15 6.85 16 18 H 0.05 1.75 8.11 -2.39 -0.02 1.73 16 19 N -0.75 -34.45 4.92 -322.65 -1.59 -36.04 16 20 C -0.22 -12.70 10.46 84.03 0.88 -11.82 16 21 H 0.06 3.64 8.06 -2.91 -0.02 3.62 16 22 C -0.07 -3.90 5.50 84.86 0.47 -3.43 16 23 N -0.98 -63.62 13.97 21.65 0.30 -63.32 16 24 Si 0.95 46.49 27.74 68.60 1.90 48.39 16 25 H -0.28 -12.95 7.11 99.48 0.71 -12.24 16 26 H -0.30 -14.93 7.11 99.48 0.71 -14.22 16 27 H -0.26 -11.71 6.52 99.48 0.65 -11.06 16 28 C -0.13 -3.54 2.44 -10.49 -0.03 -3.56 16 29 H 0.07 2.20 7.89 -2.39 -0.02 2.18 16 30 C 0.13 3.76 6.79 85.09 0.58 4.34 16 31 C -0.12 -2.35 9.36 22.27 0.21 -2.15 16 32 H 0.07 0.57 8.14 -2.39 -0.02 0.55 16 33 H 0.05 0.60 8.14 -2.38 -0.02 0.58 16 34 H 0.06 0.59 8.14 -2.39 -0.02 0.57 16 35 H 0.08 0.95 8.09 -2.39 -0.02 0.93 16 36 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 37 H 0.14 1.83 8.06 -2.91 -0.02 1.80 16 38 H 0.14 1.95 8.06 -2.91 -0.02 1.93 16 39 H 0.13 2.23 8.06 -2.91 -0.02 2.20 16 40 H 0.13 1.28 8.09 -2.39 -0.02 1.26 16 41 H 0.13 1.37 8.08 -2.38 -0.02 1.35 16 42 H 0.09 1.00 8.14 -2.39 -0.02 0.98 16 43 H 0.11 0.87 8.14 -2.39 -0.02 0.85 16 44 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 45 H 0.09 1.28 8.14 -2.39 -0.02 1.26 16 46 H 0.05 1.78 7.98 -2.39 -0.02 1.76 16 47 H 0.06 1.78 8.14 -2.39 -0.02 1.76 16 48 H 0.36 16.33 5.48 -92.70 -0.51 15.82 16 49 H 0.26 15.86 8.31 -92.71 -0.77 15.09 16 50 H 0.07 2.05 8.14 -2.39 -0.02 2.03 16 51 H 0.05 1.72 8.09 -2.39 -0.02 1.70 16 52 H 0.13 2.16 8.06 -2.91 -0.02 2.13 16 Total: -1.00 -78.26 415.48 3.50 -74.77 By element: Atomic # 1 Polarization: 28.11 SS G_CDS: 0.32 Total: 28.42 kcal Atomic # 6 Polarization: -19.13 SS G_CDS: 5.40 Total: -13.72 kcal Atomic # 7 Polarization: -112.46 SS G_CDS: -4.08 Total: -116.54 kcal Atomic # 8 Polarization: -21.27 SS G_CDS: -0.05 Total: -21.32 kcal Atomic # 14 Polarization: 46.49 SS G_CDS: 1.90 Total: 48.39 kcal Total: -78.26 3.50 -74.77 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026298274.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.101 kcal (2) G-P(sol) polarization free energy of solvation -78.264 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.163 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.496 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.767 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.667 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds