Wall clock time and date at job start Wed Apr 1 2020 03:00:00 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.50690 * 109.47509 * 2 1 4 4 C 1.38255 * 120.00303 * 269.91530 * 3 2 1 5 5 C 1.38223 * 120.00224 * 179.97438 * 4 3 2 6 6 C 1.38250 * 119.99831 * 0.08551 * 5 4 3 7 7 C 1.38214 * 120.00208 * 0.02562 * 6 5 4 8 8 C 1.50696 * 120.00387 * 179.97438 * 7 6 5 9 9 C 1.50702 * 109.47430 * 89.99682 * 8 7 6 10 10 O 1.21274 * 119.99868 * 0.02562 * 9 8 7 11 11 N 1.34774 * 120.00106 * 180.02562 * 9 8 7 12 12 C 1.48360 * 128.19222 * 359.67753 * 11 9 8 13 13 C 1.54912 * 104.06707 * 138.26479 * 12 11 9 14 14 H 1.08994 * 112.55183 * 263.88936 * 13 12 11 15 15 C 1.53563 * 108.93976 * 139.48508 * 13 12 11 16 16 C 1.53949 * 106.03285 * 229.12483 * 15 13 12 17 17 C 1.53956 * 104.89191 * 29.55871 * 16 15 13 18 18 H 1.08995 * 110.19837 * 211.26896 * 17 16 15 19 19 N 1.46501 * 110.13759 * 89.57940 * 17 16 15 20 20 C 1.36941 * 120.00053 * 138.28860 * 19 17 16 21 21 H 1.08002 * 119.99323 * 359.97438 * 20 19 17 22 22 C 1.38806 * 120.00146 * 180.02562 * 20 19 17 23 23 N 1.31621 * 120.00203 * 179.97438 * 22 20 19 24 24 Si 1.86805 * 120.00197 * 359.97438 * 22 20 19 25 25 H 1.48504 * 109.46824 * 89.99897 * 24 22 20 26 26 H 1.48492 * 109.47147 * 210.00055 * 24 22 20 27 27 H 1.48502 * 109.46975 * 330.00178 * 24 22 20 28 28 C 1.53562 * 106.02829 * 330.44327 * 17 16 15 29 29 H 1.08997 * 111.66017 * 254.93697 * 28 17 16 30 30 C 1.48343 * 128.19611 * 180.02562 * 11 9 8 31 31 C 1.38218 * 119.99984 * 89.99655 * 3 2 1 32 32 H 1.09002 * 109.46748 * 300.00338 * 1 2 3 33 33 H 1.08995 * 109.46747 * 59.99771 * 1 2 3 34 34 H 1.09000 * 109.47298 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.46883 * 240.00200 * 2 1 3 36 36 H 1.08997 * 109.47188 * 120.00488 * 2 1 3 37 37 H 1.08003 * 120.00197 * 0.03493 * 4 3 2 38 38 H 1.07997 * 119.99895 * 180.36551 * 5 4 3 39 39 H 1.08003 * 120.00177 * 179.97438 * 6 5 4 40 40 H 1.08997 * 109.47673 * 210.00226 * 8 7 6 41 41 H 1.09003 * 109.46718 * 330.00009 * 8 7 6 42 42 H 1.09004 * 110.46978 * 257.00037 * 12 11 9 43 43 H 1.09002 * 110.46897 * 19.60247 * 12 11 9 44 44 H 1.09000 * 110.14069 * 109.97713 * 15 13 12 45 45 H 1.09009 * 110.19686 * 348.29963 * 15 13 12 46 46 H 1.08999 * 110.35570 * 270.70741 * 16 15 13 47 47 H 1.09003 * 110.35707 * 148.41854 * 16 15 13 48 48 H 0.97003 * 120.00541 * 318.28990 * 19 17 16 49 49 H 0.96996 * 120.00059 * 179.97438 * 23 22 20 50 50 H 1.09010 * 110.47077 * 340.39828 * 30 11 9 51 51 H 1.09000 * 110.47546 * 102.99841 * 30 11 9 52 52 H 1.07994 * 119.99765 * 359.97438 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0325 1.4207 0.0000 4 6 2.2646 2.0719 -1.1973 5 6 2.7249 3.3752 -1.1973 6 6 2.9549 4.0270 0.0000 7 6 2.7250 3.3753 1.1970 8 6 2.9762 4.0856 2.5021 9 6 1.7203 4.7956 2.9376 10 8 0.7196 4.7308 2.2555 11 7 1.7091 5.5026 4.0849 12 6 2.8162 5.6972 5.0533 13 6 2.7207 7.1947 5.4383 14 1 3.3964 7.8202 4.8550 15 6 2.9744 7.3388 6.9460 16 6 1.8318 8.2170 7.4874 17 6 0.6371 7.9275 6.5605 18 1 0.0063 8.8120 6.4722 19 7 -0.1433 6.8018 7.0801 20 6 -1.5117 6.8487 7.0571 21 1 -2.0156 7.7158 6.6562 22 6 -2.2512 5.7824 7.5499 23 7 -3.5664 5.8277 7.5283 24 14 -1.3796 4.2829 8.2439 25 1 -1.1494 4.4734 9.6986 26 1 -2.2208 3.0781 8.0294 27 1 -0.0759 4.1054 7.5554 28 6 1.2381 7.5681 5.1938 29 1 1.1265 8.3828 4.4784 30 6 0.5851 6.2645 4.6820 31 6 2.2628 2.0723 1.1970 32 1 -0.3633 0.5139 0.8900 33 1 -0.3632 0.5139 -0.8899 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8934 -0.5138 -0.8900 36 1 1.8934 -0.5139 0.8899 37 1 2.0854 1.5626 -2.1327 38 1 2.9006 3.8858 -2.1325 39 1 3.3150 5.0453 0.0001 40 1 3.2647 3.3590 3.2616 41 1 3.7779 4.8125 2.3717 42 1 2.6713 5.0657 5.9299 43 1 3.7760 5.4837 4.5829 44 1 3.9351 7.8234 7.1202 45 1 2.9556 6.3603 7.4260 46 1 2.1058 9.2706 7.4349 47 1 1.5922 7.9374 8.5134 48 1 0.3092 6.0231 7.4405 49 1 -4.0831 5.0823 7.8723 50 1 -0.1687 6.4868 3.9265 51 1 0.1444 5.7083 5.5094 52 1 2.0823 1.5633 2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026298275.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:00 Heat of formation + Delta-G solvation = 2.934330 kcal Electronic energy + Delta-G solvation = -30310.512398 eV Core-core repulsion = 26467.674823 eV Total energy + Delta-G solvation = -3842.837575 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -40.33320 -39.58680 -38.19421 -35.05884 -34.50803 -33.48934 -32.48824 -31.21085 -29.80207 -29.38547 -28.62908 -27.41635 -25.29854 -24.04669 -23.65305 -22.85890 -22.05321 -20.60308 -19.92380 -18.77852 -18.70004 -17.79698 -16.91524 -16.57823 -15.99130 -15.60088 -15.39933 -15.30043 -14.86080 -14.50296 -14.18541 -13.88762 -13.76092 -13.66973 -13.17516 -13.11813 -13.06408 -12.93170 -12.76172 -12.48970 -12.18314 -11.93784 -11.90333 -11.74285 -11.69834 -11.37378 -11.10879 -10.95132 -10.93751 -10.85902 -10.79798 -10.56993 -10.36878 -10.28258 -10.17630 -10.00837 -9.61362 -9.55998 -9.04974 -8.80993 -8.63692 -8.33717 -7.27151 -5.82105 -3.19026 1.28847 1.36905 2.89471 3.23127 3.31038 3.33560 3.41791 3.75924 4.52730 4.53819 4.59511 4.61879 4.68608 4.76614 4.88107 4.99982 5.04166 5.05034 5.15594 5.23382 5.30589 5.34098 5.36646 5.40249 5.48036 5.48162 5.52642 5.54019 5.64828 5.75017 5.75741 5.77997 5.90243 5.93505 5.98130 6.01052 6.03773 6.06240 6.12448 6.18518 6.25388 6.40429 6.42046 6.47756 6.52313 6.57455 6.57741 6.74291 6.78802 6.96927 7.02239 7.90339 7.94664 8.37114 8.45809 9.13793 9.85541 10.03756 11.35969 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011314 B = 0.003177 C = 0.002691 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2474.147182 B = 8810.637387 C =10404.374935 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.083 4.083 3 C -0.082 4.082 4 C -0.121 4.121 5 C -0.117 4.117 6 C -0.110 4.110 7 C -0.058 4.058 8 C -0.099 4.099 9 C 0.529 3.471 10 O -0.535 6.535 11 N -0.626 5.626 12 C 0.106 3.894 13 C -0.100 4.100 14 H 0.080 0.920 15 C -0.115 4.115 16 C -0.136 4.136 17 C 0.183 3.817 18 H 0.072 0.928 19 N -0.735 5.735 20 C -0.251 4.251 21 H 0.093 0.907 22 C 0.010 3.990 23 N -0.928 5.928 24 Si 0.879 3.121 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.278 1.278 28 C -0.123 4.123 29 H 0.075 0.925 30 C 0.105 3.895 31 C -0.102 4.102 32 H 0.059 0.941 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.069 0.931 36 H 0.070 0.930 37 H 0.118 0.882 38 H 0.120 0.880 39 H 0.118 0.882 40 H 0.098 0.902 41 H 0.099 0.901 42 H 0.073 0.927 43 H 0.070 0.930 44 H 0.059 0.941 45 H 0.063 0.937 46 H 0.063 0.937 47 H 0.071 0.929 48 H 0.361 0.639 49 H 0.260 0.740 50 H 0.071 0.929 51 H 0.117 0.883 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 19.420 -4.882 -11.660 23.172 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.120 4.120 3 C -0.082 4.082 4 C -0.139 4.139 5 C -0.135 4.135 6 C -0.128 4.128 7 C -0.058 4.058 8 C -0.139 4.139 9 C 0.317 3.683 10 O -0.411 6.411 11 N -0.360 5.360 12 C -0.018 4.018 13 C -0.119 4.119 14 H 0.099 0.901 15 C -0.153 4.153 16 C -0.175 4.175 17 C 0.072 3.928 18 H 0.090 0.910 19 N -0.377 5.377 20 C -0.380 4.380 21 H 0.110 0.890 22 C -0.186 4.186 23 N -0.575 5.575 24 Si 0.709 3.291 25 H -0.210 1.210 26 H -0.217 1.217 27 H -0.204 1.204 28 C -0.145 4.145 29 H 0.094 0.906 30 C -0.016 4.016 31 C -0.120 4.120 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.075 0.925 35 H 0.088 0.912 36 H 0.088 0.912 37 H 0.136 0.864 38 H 0.138 0.862 39 H 0.136 0.864 40 H 0.116 0.884 41 H 0.117 0.883 42 H 0.091 0.909 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.082 0.918 46 H 0.081 0.919 47 H 0.090 0.910 48 H 0.195 0.805 49 H 0.070 0.930 50 H 0.089 0.911 51 H 0.135 0.865 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges 18.575 -4.933 -12.142 22.733 hybrid contribution 0.546 -1.033 0.557 1.295 sum 19.121 -5.966 -11.586 23.140 Atomic orbital electron populations 1.21759 0.94558 1.01583 1.02681 1.20529 0.96391 0.92580 1.02538 1.19834 0.98965 0.96332 0.93075 1.20967 1.00490 0.95127 0.97320 1.21042 0.99810 0.94902 0.97757 1.20933 1.00593 0.99287 0.92002 1.19271 0.98964 0.93926 0.93646 1.20659 0.97089 1.00102 0.96028 1.19989 0.89761 0.78906 0.79608 1.90736 1.35371 1.61714 1.53296 1.49334 1.15396 1.50448 1.20868 1.22759 0.90006 0.96498 0.92488 1.22624 0.97667 0.94949 0.96692 0.90148 1.22136 0.98564 1.00417 0.94168 1.22633 0.95497 0.98935 1.00427 1.20687 0.91265 0.91492 0.89397 0.91001 1.42889 1.03915 1.17516 1.73363 1.19107 0.80210 1.03576 1.35125 0.88951 1.24663 0.95141 0.97891 1.00911 1.69683 1.03933 1.32296 1.51599 0.86666 0.78913 0.84249 0.79285 1.21009 1.21683 1.20417 1.23214 0.93473 0.97583 1.00263 0.90619 1.23093 0.88002 0.91670 0.98863 1.20848 0.99109 0.94410 0.97650 0.92197 0.92549 0.92482 0.91225 0.91154 0.86389 0.86195 0.86406 0.88357 0.88323 0.90880 0.91131 0.92181 0.91795 0.91855 0.91040 0.80512 0.92950 0.91063 0.86528 0.86385 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.48 9.90 37.16 0.37 -1.12 16 2 C -0.08 -0.79 6.06 -27.88 -0.17 -0.96 16 3 C -0.08 -0.96 5.13 -104.63 -0.54 -1.50 16 4 C -0.12 -1.33 9.70 -39.58 -0.38 -1.72 16 5 C -0.12 -1.31 10.05 -39.58 -0.40 -1.70 16 6 C -0.11 -1.34 9.70 -39.59 -0.38 -1.73 16 7 C -0.06 -0.75 4.37 -104.62 -0.46 -1.21 16 8 C -0.10 -1.19 4.81 -29.04 -0.14 -1.33 16 9 C 0.53 8.87 7.92 -10.99 -0.09 8.78 16 10 O -0.53 -11.38 16.32 5.56 0.09 -11.29 16 11 N -0.63 -10.15 3.31 -168.55 -0.56 -10.71 16 12 C 0.11 1.32 6.46 -2.01 -0.01 1.31 16 13 C -0.10 -1.24 3.95 -88.35 -0.35 -1.59 16 14 H 0.08 0.87 8.14 -51.93 -0.42 0.45 16 15 C -0.11 -1.35 6.37 -25.94 -0.17 -1.52 16 16 C -0.14 -1.89 6.50 -25.74 -0.17 -2.06 16 17 C 0.18 3.17 3.54 -67.14 -0.24 2.93 16 18 H 0.07 1.32 7.91 -51.93 -0.41 0.91 16 19 N -0.74 -15.85 2.68 -52.66 -0.14 -15.99 16 20 C -0.25 -6.67 9.92 -15.06 -0.15 -6.82 16 21 H 0.09 2.67 7.97 -52.49 -0.42 2.25 16 22 C 0.01 0.30 5.50 -17.43 -0.10 0.20 16 23 N -0.93 -28.68 13.97 55.49 0.78 -27.91 16 24 Si 0.88 21.54 27.74 -169.99 -4.71 16.83 16 25 H -0.28 -6.88 7.11 56.52 0.40 -6.48 16 26 H -0.29 -7.38 7.11 56.52 0.40 -6.98 16 27 H -0.28 -6.34 6.52 56.52 0.37 -5.97 16 28 C -0.12 -1.94 3.93 -88.56 -0.35 -2.29 16 29 H 0.08 1.16 8.14 -51.93 -0.42 0.73 16 30 C 0.10 1.99 6.27 -2.23 -0.01 1.98 16 31 C -0.10 -1.32 9.36 -39.58 -0.37 -1.69 16 32 H 0.06 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.06 0.57 8.14 -51.93 -0.42 0.14 16 34 H 0.06 0.48 8.14 -51.93 -0.42 0.05 16 35 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 36 H 0.07 0.62 8.09 -51.93 -0.42 0.20 16 37 H 0.12 1.04 8.06 -52.48 -0.42 0.62 16 38 H 0.12 1.05 8.06 -52.49 -0.42 0.63 16 39 H 0.12 1.26 8.06 -52.48 -0.42 0.84 16 40 H 0.10 1.00 8.09 -51.93 -0.42 0.58 16 41 H 0.10 0.94 7.94 -51.93 -0.41 0.52 16 42 H 0.07 0.94 7.22 -51.93 -0.37 0.57 16 43 H 0.07 0.66 7.32 -51.93 -0.38 0.28 16 44 H 0.06 0.58 8.14 -51.93 -0.42 0.16 16 45 H 0.06 0.77 7.14 -51.92 -0.37 0.40 16 46 H 0.06 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.07 1.07 8.09 -51.93 -0.42 0.65 16 48 H 0.36 7.74 5.49 -40.82 -0.22 7.52 16 49 H 0.26 7.72 8.31 -40.82 -0.34 7.38 16 50 H 0.07 1.53 7.88 -51.92 -0.41 1.13 16 51 H 0.12 2.57 5.19 -51.93 -0.27 2.30 16 52 H 0.12 1.43 8.06 -52.49 -0.42 1.01 16 LS Contribution 408.11 15.07 6.15 6.15 Total: -1.00 -33.04 408.11 -11.26 -44.31 By element: Atomic # 1 Polarization: 19.39 SS G_CDS: -8.77 Total: 10.62 kcal Atomic # 6 Polarization: -7.91 SS G_CDS: -4.10 Total: -12.01 kcal Atomic # 7 Polarization: -54.68 SS G_CDS: 0.08 Total: -54.61 kcal Atomic # 8 Polarization: -11.38 SS G_CDS: 0.09 Total: -11.29 kcal Atomic # 14 Polarization: 21.54 SS G_CDS: -4.71 Total: 16.83 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -33.04 -11.26 -44.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026298275.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.240 kcal (2) G-P(sol) polarization free energy of solvation -33.043 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.198 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.263 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.306 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.934 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds