Wall clock time and date at job start Wed Apr 1 2020 03:00:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47177 * 2 1 4 4 C 1.38255 * 119.99661 * 90.00123 * 3 2 1 5 5 C 1.38221 * 119.99931 * 180.02562 * 4 3 2 6 6 C 1.38258 * 119.99635 * 359.97438 * 5 4 3 7 7 C 1.38205 * 120.00152 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00098 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47266 * 89.99737 * 8 7 6 10 10 O 1.21279 * 120.00113 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99961 * 180.02562 * 9 8 7 12 12 C 1.48336 * 128.19655 * 359.68270 * 11 9 8 13 13 C 1.54888 * 104.09907 * 138.19066 * 12 11 9 14 14 H 1.08995 * 112.10484 * 263.91070 * 13 12 11 15 15 C 1.54150 * 108.65109 * 138.74820 * 13 12 11 16 16 C 1.54832 * 104.34929 * 224.16543 * 15 13 12 17 17 C 1.54837 * 102.73510 * 38.22469 * 16 15 13 18 18 H 1.09004 * 110.45067 * 80.48923 * 17 16 15 19 19 N 1.46499 * 110.45940 * 203.05295 * 17 16 15 20 20 C 1.36928 * 119.99997 * 269.92942 * 19 17 16 21 21 H 1.08001 * 120.00525 * 0.02562 * 20 19 17 22 22 C 1.38820 * 119.99636 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00239 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99814 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47803 * 89.99768 * 24 22 20 26 26 H 1.48504 * 109.46987 * 210.00046 * 24 22 20 27 27 H 1.48505 * 109.47220 * 329.99642 * 24 22 20 28 28 C 1.54142 * 104.34544 * 321.77463 * 17 16 15 29 29 H 1.09000 * 112.65430 * 260.67863 * 28 17 16 30 30 C 1.48337 * 128.19408 * 180.02562 * 11 9 8 31 31 C 1.38211 * 120.00114 * 270.27436 * 3 2 1 32 32 H 1.08993 * 109.47520 * 300.00116 * 1 2 3 33 33 H 1.09002 * 109.47000 * 60.00044 * 1 2 3 34 34 H 1.09001 * 109.47351 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.47596 * 240.00311 * 2 1 3 36 36 H 1.09002 * 109.47000 * 119.99956 * 2 1 3 37 37 H 1.08004 * 120.00180 * 359.97438 * 4 3 2 38 38 H 1.08001 * 120.00046 * 179.97438 * 5 4 3 39 39 H 1.07996 * 119.99424 * 179.97438 * 6 5 4 40 40 H 1.09004 * 109.47205 * 329.99831 * 8 7 6 41 41 H 1.08997 * 109.47395 * 210.00323 * 8 7 6 42 42 H 1.09003 * 110.46058 * 256.93389 * 12 11 9 43 43 H 1.08999 * 110.46807 * 19.51713 * 12 11 9 44 44 H 1.09004 * 110.45626 * 342.88316 * 15 13 12 45 45 H 1.08997 * 110.45475 * 105.31813 * 15 13 12 46 46 H 1.08999 * 110.76040 * 156.54220 * 16 15 13 47 47 H 1.09003 * 110.75619 * 279.91734 * 16 15 13 48 48 H 0.97003 * 119.99471 * 89.92855 * 19 17 16 49 49 H 0.96995 * 119.99974 * 180.02562 * 23 22 20 50 50 H 1.09002 * 110.46924 * 340.47230 * 30 11 9 51 51 H 1.08997 * 110.46666 * 102.93840 * 30 11 9 52 52 H 1.07993 * 120.00011 * 0.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1974 5 6 2.7230 3.3758 1.1974 6 6 2.9534 4.0276 0.0001 7 6 2.7230 3.3761 -1.1968 8 6 2.9736 4.0867 -2.5019 9 6 4.3969 3.8505 -2.9373 10 8 5.1350 3.1716 -2.2552 11 7 4.8496 4.3938 -4.0847 12 6 4.1106 5.2405 -5.0529 13 6 5.1240 6.3471 -5.4368 14 1 4.9834 7.2540 -4.8487 15 6 5.0246 6.6018 -6.9538 16 6 6.4967 6.6887 -7.4257 17 6 7.1935 5.6010 -6.5720 18 1 7.0284 4.6139 -7.0041 19 7 8.6275 5.8788 -6.4596 20 6 9.4983 5.3680 -7.3846 21 1 9.1281 4.7607 -8.1973 22 6 10.8572 5.6309 -7.2778 23 7 11.3086 6.3706 -6.2871 24 14 12.0452 4.9347 -8.5401 25 1 12.1996 5.8986 -9.6591 26 1 13.3656 4.7020 -7.9015 27 1 11.5150 3.6499 -9.0631 28 6 6.5146 5.7055 -5.1920 29 1 7.1064 6.2745 -4.4750 30 6 6.2028 4.2809 -4.6817 31 6 2.2573 2.0743 -1.1969 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8932 -0.5138 0.8900 37 1 2.0823 1.5635 2.1327 38 1 2.9026 3.8851 2.1328 39 1 3.3126 5.0461 0.0002 40 1 2.8062 5.1559 -2.3715 41 1 2.2928 3.7025 -3.2614 42 1 3.8278 4.6584 -5.9300 43 1 3.2287 5.6760 -4.5829 44 1 4.5148 5.7739 -7.4466 45 1 4.5038 7.5392 -7.1494 46 1 6.5764 6.4563 -8.4876 47 1 6.9133 7.6730 -7.2121 48 1 8.9600 6.4246 -5.7299 49 1 12.2580 6.5546 -6.2127 50 1 6.9286 3.9791 -3.9265 51 1 6.1966 3.5705 -5.5084 52 1 2.0726 1.5669 -2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026298277.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:09 Heat of formation + Delta-G solvation = -10.298297 kcal Electronic energy + Delta-G solvation = -29307.603778 eV Core-core repulsion = 25464.192393 eV Total energy + Delta-G solvation = -3843.411385 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.95 seconds Orbital eigenvalues (eV) -40.42443 -39.61463 -38.25377 -35.14930 -34.64226 -33.33639 -32.61067 -30.97554 -29.93350 -29.51550 -28.37806 -27.48463 -25.02101 -24.18143 -23.74741 -22.86278 -22.15437 -20.78377 -20.15285 -19.07595 -18.82715 -17.26902 -16.95373 -16.67311 -16.11965 -15.75032 -15.56575 -15.15651 -14.99501 -14.34218 -14.23044 -13.98009 -13.84400 -13.74015 -13.33955 -13.13455 -13.11189 -13.03718 -12.77816 -12.39284 -12.23382 -12.09872 -11.94773 -11.73462 -11.65270 -11.51100 -11.19195 -11.05614 -10.97009 -10.87307 -10.79371 -10.67564 -10.39156 -10.25984 -10.21401 -9.95744 -9.78474 -9.65142 -8.92211 -8.88022 -8.73658 -8.64071 -6.95418 -5.77164 -3.05914 1.18833 1.27384 2.68199 2.99178 3.43282 3.48624 3.50342 3.64421 4.41553 4.47625 4.51839 4.57329 4.63195 4.66170 4.85219 4.88979 4.95220 4.95949 5.04717 5.08171 5.21380 5.24239 5.30287 5.35532 5.41593 5.42954 5.45671 5.55660 5.61062 5.61610 5.62606 5.75404 5.82963 5.85646 5.91961 5.94623 5.95093 5.96641 6.05517 6.17301 6.25507 6.31299 6.33240 6.41422 6.42735 6.47133 6.54723 6.66400 6.79162 6.87290 7.03140 7.64774 7.69720 8.22612 8.41251 9.52426 10.10065 10.43968 11.45341 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.002064 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.264968 B =13563.323257 C =14186.444778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.082 4.082 4 C -0.120 4.120 5 C -0.116 4.116 6 C -0.109 4.109 7 C -0.060 4.060 8 C -0.098 4.098 9 C 0.533 3.467 10 O -0.533 6.533 11 N -0.627 5.627 12 C 0.104 3.896 13 C -0.102 4.102 14 H 0.085 0.915 15 C -0.116 4.116 16 C -0.143 4.143 17 C 0.184 3.816 18 H 0.057 0.943 19 N -0.720 5.720 20 C -0.240 4.240 21 H 0.070 0.930 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.107 4.107 29 H 0.088 0.912 30 C 0.114 3.886 31 C -0.102 4.102 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.118 0.882 38 H 0.121 0.879 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.076 0.924 43 H 0.074 0.926 44 H 0.064 0.936 45 H 0.059 0.941 46 H 0.059 0.941 47 H 0.065 0.935 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.081 0.919 51 H 0.074 0.926 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.673 -5.076 10.216 28.093 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.082 4.082 4 C -0.138 4.138 5 C -0.134 4.134 6 C -0.127 4.127 7 C -0.061 4.061 8 C -0.137 4.137 9 C 0.321 3.679 10 O -0.410 6.410 11 N -0.361 5.361 12 C -0.019 4.019 13 C -0.121 4.121 14 H 0.103 0.897 15 C -0.154 4.154 16 C -0.184 4.184 17 C 0.073 3.927 18 H 0.075 0.925 19 N -0.360 5.360 20 C -0.371 4.371 21 H 0.088 0.912 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.127 4.127 29 H 0.106 0.894 30 C -0.007 4.007 31 C -0.120 4.120 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.090 0.910 36 H 0.089 0.911 37 H 0.136 0.864 38 H 0.139 0.861 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.094 0.906 43 H 0.092 0.908 44 H 0.082 0.918 45 H 0.078 0.922 46 H 0.078 0.922 47 H 0.084 0.916 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.099 0.901 51 H 0.092 0.908 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -25.198 -5.625 10.574 27.900 hybrid contribution 0.931 0.019 -0.539 1.076 sum -24.267 -5.606 10.036 26.852 Atomic orbital electron populations 1.21742 0.94772 1.01623 1.02147 1.20541 0.96066 0.92753 1.02936 1.19819 0.99257 0.96071 0.93087 1.20986 1.00457 0.94990 0.97370 1.21069 0.99514 0.94975 0.97845 1.20962 0.99666 1.00078 0.92002 1.19260 0.98791 0.94417 0.93622 1.20646 0.94647 1.02378 0.96075 1.20079 0.89186 0.79286 0.79349 1.90745 1.58260 1.38862 1.53087 1.49288 1.14431 1.51118 1.21310 1.22842 0.95140 0.91736 0.92226 1.22810 0.94654 0.97370 0.97307 0.89711 1.22388 0.98480 1.00907 0.93661 1.23228 0.93237 1.01577 1.00309 1.21128 0.85077 0.95987 0.90494 0.92520 1.42442 0.99926 1.61367 1.32274 1.19233 0.88034 1.25344 1.04483 0.91186 1.24749 0.96996 1.00693 0.98498 1.69656 1.13594 1.42574 1.32176 0.86209 0.80871 0.78521 0.80697 1.21768 1.21805 1.20768 1.23080 0.95396 0.94722 0.99529 0.89388 1.22615 0.83103 0.97261 0.97756 1.20816 0.99752 0.93888 0.97587 0.92615 0.92569 0.92461 0.91014 0.91063 0.86350 0.86106 0.86293 0.88087 0.88193 0.90597 0.90792 0.91757 0.92247 0.92218 0.91575 0.78174 0.93501 0.90067 0.90784 0.86420 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.94 9.89 37.15 0.37 -0.57 16 2 C -0.09 -0.67 6.06 -27.88 -0.17 -0.84 16 3 C -0.08 -0.83 5.13 -104.62 -0.54 -1.37 16 4 C -0.12 -1.17 9.70 -39.58 -0.38 -1.56 16 5 C -0.12 -1.17 10.05 -39.58 -0.40 -1.57 16 6 C -0.11 -1.20 9.70 -39.59 -0.38 -1.59 16 7 C -0.06 -0.68 4.37 -104.63 -0.46 -1.14 16 8 C -0.10 -0.97 4.81 -29.04 -0.14 -1.11 16 9 C 0.53 7.56 7.92 -10.98 -0.09 7.48 16 10 O -0.53 -9.97 16.32 5.56 0.09 -9.88 16 11 N -0.63 -8.39 3.31 -168.61 -0.56 -8.95 16 12 C 0.10 1.05 6.47 -2.03 -0.01 1.04 16 13 C -0.10 -1.22 3.97 -87.92 -0.35 -1.57 16 14 H 0.08 0.96 8.14 -51.93 -0.42 0.54 16 15 C -0.12 -1.38 6.36 -25.16 -0.16 -1.54 16 16 C -0.14 -2.32 6.57 -24.80 -0.16 -2.48 16 17 C 0.18 3.43 3.06 -66.37 -0.20 3.22 16 18 H 0.06 1.08 7.13 -51.93 -0.37 0.71 16 19 N -0.72 -17.49 5.20 -51.91 -0.27 -17.76 16 20 C -0.24 -6.52 9.96 -15.06 -0.15 -6.67 16 21 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 22 C -0.01 -0.38 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -28.04 13.06 55.49 0.72 -27.32 16 24 Si 0.91 22.34 29.55 -169.99 -5.02 17.32 16 25 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 26 H -0.29 -7.30 7.11 56.52 0.40 -6.89 16 27 H -0.28 -6.77 7.11 56.52 0.40 -6.37 16 28 C -0.11 -1.69 3.63 -88.13 -0.32 -2.01 16 29 H 0.09 1.54 7.83 -51.93 -0.41 1.13 16 30 C 0.11 1.80 6.57 -2.24 -0.01 1.79 16 31 C -0.10 -1.12 9.36 -39.58 -0.37 -1.49 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.37 8.14 -51.93 -0.42 -0.05 16 34 H 0.06 0.31 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.56 8.09 -51.93 -0.42 0.14 16 36 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 37 H 0.12 0.91 8.06 -52.48 -0.42 0.49 16 38 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 39 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 40 H 0.10 0.80 7.94 -51.93 -0.41 0.39 16 41 H 0.10 0.77 8.08 -51.93 -0.42 0.35 16 42 H 0.08 0.70 7.21 -51.93 -0.37 0.33 16 43 H 0.07 0.56 7.32 -51.93 -0.38 0.18 16 44 H 0.06 0.69 7.18 -51.93 -0.37 0.31 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 47 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 48 H 0.38 10.03 7.63 -40.82 -0.31 9.72 16 49 H 0.26 7.46 8.31 -40.82 -0.34 7.13 16 50 H 0.08 1.48 7.88 -51.93 -0.41 1.07 16 51 H 0.07 1.15 7.21 -51.93 -0.37 0.78 16 52 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 LS Contribution 414.80 15.07 6.25 6.25 Total: -1.00 -33.03 414.80 -11.68 -44.71 By element: Atomic # 1 Polarization: 16.95 SS G_CDS: -8.87 Total: 8.08 kcal Atomic # 6 Polarization: -8.42 SS G_CDS: -4.03 Total: -12.44 kcal Atomic # 7 Polarization: -53.93 SS G_CDS: -0.10 Total: -54.03 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -5.02 Total: 17.32 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.03 -11.68 -44.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026298277.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.410 kcal (2) G-P(sol) polarization free energy of solvation -33.028 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.382 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.680 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.708 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.298 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.95 seconds