Wall clock time and date at job start Wed Apr 1 2020 03:00:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52993 * 1 3 3 C 1.50703 * 109.47177 * 2 1 4 4 C 1.38255 * 119.99661 * 90.00123 * 3 2 1 5 5 C 1.38221 * 119.99931 * 180.02562 * 4 3 2 6 6 C 1.38258 * 119.99635 * 359.97438 * 5 4 3 7 7 C 1.38205 * 120.00152 * 0.02562 * 6 5 4 8 8 C 1.50697 * 120.00098 * 179.97438 * 7 6 5 9 9 C 1.50700 * 109.47266 * 89.99737 * 8 7 6 10 10 O 1.21279 * 120.00113 * 0.02562 * 9 8 7 11 11 N 1.34784 * 119.99961 * 180.02562 * 9 8 7 12 12 C 1.48336 * 128.19655 * 359.68270 * 11 9 8 13 13 C 1.54888 * 104.09907 * 138.19066 * 12 11 9 14 14 H 1.08995 * 112.10484 * 263.91070 * 13 12 11 15 15 C 1.54150 * 108.65109 * 138.74820 * 13 12 11 16 16 C 1.54832 * 104.34929 * 224.16543 * 15 13 12 17 17 C 1.54837 * 102.73510 * 38.22469 * 16 15 13 18 18 H 1.09004 * 110.45067 * 80.48923 * 17 16 15 19 19 N 1.46499 * 110.45940 * 203.05295 * 17 16 15 20 20 C 1.36928 * 119.99997 * 269.92942 * 19 17 16 21 21 H 1.08001 * 120.00525 * 0.02562 * 20 19 17 22 22 C 1.38820 * 119.99636 * 180.02562 * 20 19 17 23 23 N 1.31619 * 120.00239 * 0.02562 * 22 20 19 24 24 Si 1.86799 * 119.99814 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47803 * 89.99768 * 24 22 20 26 26 H 1.48504 * 109.46987 * 210.00046 * 24 22 20 27 27 H 1.48505 * 109.47220 * 329.99642 * 24 22 20 28 28 C 1.54142 * 104.34544 * 321.77463 * 17 16 15 29 29 H 1.09000 * 112.65430 * 260.67863 * 28 17 16 30 30 C 1.48337 * 128.19408 * 180.02562 * 11 9 8 31 31 C 1.38211 * 120.00114 * 270.27436 * 3 2 1 32 32 H 1.08993 * 109.47520 * 300.00116 * 1 2 3 33 33 H 1.09002 * 109.47000 * 60.00044 * 1 2 3 34 34 H 1.09001 * 109.47351 * 179.97438 * 1 2 3 35 35 H 1.08999 * 109.47596 * 240.00311 * 2 1 3 36 36 H 1.09002 * 109.47000 * 119.99956 * 2 1 3 37 37 H 1.08004 * 120.00180 * 359.97438 * 4 3 2 38 38 H 1.08001 * 120.00046 * 179.97438 * 5 4 3 39 39 H 1.07996 * 119.99424 * 179.97438 * 6 5 4 40 40 H 1.09004 * 109.47205 * 329.99831 * 8 7 6 41 41 H 1.08997 * 109.47395 * 210.00323 * 8 7 6 42 42 H 1.09003 * 110.46058 * 256.93389 * 12 11 9 43 43 H 1.08999 * 110.46807 * 19.51713 * 12 11 9 44 44 H 1.09004 * 110.45626 * 342.88316 * 15 13 12 45 45 H 1.08997 * 110.45475 * 105.31813 * 15 13 12 46 46 H 1.08999 * 110.76040 * 156.54220 * 16 15 13 47 47 H 1.09003 * 110.75619 * 279.91734 * 16 15 13 48 48 H 0.97003 * 119.99471 * 89.92855 * 19 17 16 49 49 H 0.96995 * 119.99974 * 180.02562 * 23 22 20 50 50 H 1.09002 * 110.46924 * 340.47230 * 30 11 9 51 51 H 1.08997 * 110.46666 * 102.93840 * 30 11 9 52 52 H 1.07993 * 120.00011 * 0.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0725 1.1974 5 6 2.7230 3.3758 1.1974 6 6 2.9534 4.0276 0.0001 7 6 2.7230 3.3761 -1.1968 8 6 2.9736 4.0867 -2.5019 9 6 4.3969 3.8505 -2.9373 10 8 5.1350 3.1716 -2.2552 11 7 4.8496 4.3938 -4.0847 12 6 4.1106 5.2405 -5.0529 13 6 5.1240 6.3471 -5.4368 14 1 4.9834 7.2540 -4.8487 15 6 5.0246 6.6018 -6.9538 16 6 6.4967 6.6887 -7.4257 17 6 7.1935 5.6010 -6.5720 18 1 7.0284 4.6139 -7.0041 19 7 8.6275 5.8788 -6.4596 20 6 9.4983 5.3680 -7.3846 21 1 9.1281 4.7607 -8.1973 22 6 10.8572 5.6309 -7.2778 23 7 11.3086 6.3706 -6.2871 24 14 12.0452 4.9347 -8.5401 25 1 12.1996 5.8986 -9.6591 26 1 13.3656 4.7020 -7.9015 27 1 11.5150 3.6499 -9.0631 28 6 6.5146 5.7055 -5.1920 29 1 7.1064 6.2745 -4.4750 30 6 6.2028 4.2809 -4.6817 31 6 2.2573 2.0743 -1.1969 32 1 -0.3634 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3634 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8932 -0.5138 0.8900 37 1 2.0823 1.5635 2.1327 38 1 2.9026 3.8851 2.1328 39 1 3.3126 5.0461 0.0002 40 1 2.8062 5.1559 -2.3715 41 1 2.2928 3.7025 -3.2614 42 1 3.8278 4.6584 -5.9300 43 1 3.2287 5.6760 -4.5829 44 1 4.5148 5.7739 -7.4466 45 1 4.5038 7.5392 -7.1494 46 1 6.5764 6.4563 -8.4876 47 1 6.9133 7.6730 -7.2121 48 1 8.9600 6.4246 -5.7299 49 1 12.2580 6.5546 -6.2127 50 1 6.9286 3.9791 -3.9265 51 1 6.1966 3.5705 -5.5084 52 1 2.0726 1.5669 -2.1322 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026298277.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:07 Heat of formation + Delta-G solvation = -28.251142 kcal Electronic energy + Delta-G solvation = -29308.382272 eV Core-core repulsion = 25464.192393 eV Total energy + Delta-G solvation = -3844.189879 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.49254 -40.49622 -39.37837 -36.63968 -35.33290 -34.97620 -33.39287 -32.69255 -31.02353 -30.32578 -29.72279 -28.38180 -26.60074 -24.88242 -24.76809 -24.54682 -22.92964 -21.69861 -21.30447 -20.32171 -19.90119 -19.05957 -18.16396 -17.44394 -17.22324 -16.86426 -16.61810 -16.29991 -15.98160 -15.73530 -15.54436 -14.99219 -14.85251 -14.66002 -14.59936 -14.40439 -14.03283 -13.89612 -13.80567 -13.63469 -13.26952 -12.99344 -12.97551 -12.91395 -12.76231 -12.61319 -12.58372 -12.34012 -12.15240 -12.09532 -11.94045 -11.70841 -11.67079 -11.63481 -11.53203 -11.42413 -11.36972 -10.98311 -10.81136 -9.76652 -9.68325 -9.49780 -8.96784 -7.94178 -5.21722 0.41334 0.51154 1.45740 1.47383 1.55479 1.62178 1.97002 2.55923 2.86352 3.35559 3.46552 3.55914 3.67245 3.78484 3.82909 3.97186 4.01704 4.10247 4.22642 4.25850 4.28259 4.35878 4.39201 4.48973 4.51308 4.52189 4.57504 4.58224 4.63448 4.67240 4.69662 4.74084 4.78622 4.85779 4.95170 5.01966 5.07535 5.09448 5.11847 5.18519 5.20477 5.23256 5.30534 5.38905 5.43934 5.49063 5.54828 5.57575 5.64557 5.66296 5.73012 6.14294 6.28433 6.61731 7.15168 7.33703 8.12128 8.33189 9.29535 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016973 B = 0.002064 C = 0.001973 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1649.264968 B =13563.323257 C =14186.444778 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.141 4.141 2 C -0.086 4.086 3 C -0.092 4.092 4 C -0.130 4.130 5 C -0.126 4.126 6 C -0.128 4.128 7 C -0.077 4.077 8 C -0.086 4.086 9 C 0.527 3.473 10 O -0.590 6.590 11 N -0.625 5.625 12 C 0.106 3.894 13 C -0.093 4.093 14 H 0.098 0.902 15 C -0.100 4.100 16 C -0.139 4.139 17 C 0.175 3.825 18 H 0.053 0.947 19 N -0.736 5.736 20 C -0.234 4.234 21 H 0.077 0.923 22 C -0.081 4.081 23 N -0.972 5.972 24 Si 0.970 3.030 25 H -0.286 1.286 26 H -0.299 1.299 27 H -0.269 1.269 28 C -0.103 4.103 29 H 0.062 0.938 30 C 0.117 3.883 31 C -0.119 4.119 32 H 0.056 0.944 33 H 0.053 0.947 34 H 0.069 0.931 35 H 0.069 0.931 36 H 0.077 0.923 37 H 0.137 0.863 38 H 0.138 0.862 39 H 0.126 0.874 40 H 0.128 0.872 41 H 0.130 0.870 42 H 0.096 0.904 43 H 0.115 0.885 44 H 0.087 0.913 45 H 0.086 0.914 46 H 0.054 0.946 47 H 0.046 0.954 48 H 0.370 0.630 49 H 0.249 0.751 50 H 0.042 0.958 51 H 0.075 0.925 52 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.277 -5.175 9.365 31.171 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.148 4.148 5 C -0.144 4.144 6 C -0.146 4.146 7 C -0.078 4.078 8 C -0.125 4.125 9 C 0.318 3.682 10 O -0.470 6.470 11 N -0.358 5.358 12 C -0.015 4.015 13 C -0.112 4.112 14 H 0.117 0.883 15 C -0.138 4.138 16 C -0.180 4.180 17 C 0.066 3.934 18 H 0.071 0.929 19 N -0.375 5.375 20 C -0.366 4.366 21 H 0.095 0.905 22 C -0.273 4.273 23 N -0.623 5.623 24 Si 0.800 3.200 25 H -0.213 1.213 26 H -0.226 1.226 27 H -0.194 1.194 28 C -0.124 4.124 29 H 0.080 0.920 30 C -0.006 4.006 31 C -0.137 4.137 32 H 0.075 0.925 33 H 0.072 0.928 34 H 0.088 0.912 35 H 0.088 0.912 36 H 0.096 0.904 37 H 0.154 0.846 38 H 0.156 0.844 39 H 0.144 0.856 40 H 0.146 0.854 41 H 0.148 0.852 42 H 0.114 0.886 43 H 0.134 0.866 44 H 0.105 0.895 45 H 0.104 0.896 46 H 0.073 0.927 47 H 0.065 0.935 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.061 0.939 51 H 0.093 0.907 52 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -28.890 -5.720 9.678 31.000 hybrid contribution 2.025 0.013 -0.236 2.039 sum -26.864 -5.708 9.441 29.041 Atomic orbital electron populations 1.21707 0.93591 1.02424 1.02100 1.20584 0.97045 0.91499 1.03164 1.20147 0.98881 0.97090 0.93068 1.21287 1.00180 0.95106 0.98179 1.21375 0.99204 0.95351 0.98458 1.21214 1.00186 1.00740 0.92496 1.19506 0.99061 0.94847 0.94353 1.20684 0.91625 1.04074 0.96119 1.20936 0.90534 0.78106 0.78621 1.90721 1.60093 1.41438 1.54761 1.49350 1.13519 1.51237 1.21678 1.23098 0.95284 0.90663 0.92478 1.22813 0.92147 0.98373 0.97902 0.88334 1.22336 0.95162 1.03309 0.93001 1.23052 0.96336 0.99133 0.99438 1.21422 0.82537 0.96592 0.92866 0.92912 1.42672 1.02245 1.61172 1.31381 1.19633 0.88639 1.23907 1.04421 0.90527 1.25556 0.98874 1.02081 1.00746 1.69820 1.13309 1.44795 1.34353 0.85180 0.78247 0.78273 0.78338 1.21334 1.22622 1.19420 1.22893 0.97457 0.94942 0.97087 0.91978 1.22376 0.84254 0.97190 0.96760 1.21052 1.00228 0.94128 0.98294 0.92508 0.92753 0.91231 0.91197 0.90434 0.84553 0.84427 0.85624 0.85379 0.85193 0.88643 0.86647 0.89497 0.89583 0.92723 0.93539 0.79825 0.94227 0.93898 0.90696 0.85710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.89 71.98 0.71 -0.87 16 2 C -0.09 -1.24 6.06 29.85 0.18 -1.06 16 3 C -0.09 -1.77 5.13 -19.87 -0.10 -1.87 16 4 C -0.13 -2.41 9.70 22.27 0.22 -2.20 16 5 C -0.13 -2.44 10.05 22.27 0.22 -2.22 16 6 C -0.13 -2.72 9.70 22.27 0.22 -2.50 16 7 C -0.08 -1.64 4.37 -19.87 -0.09 -1.73 16 8 C -0.09 -1.46 4.81 29.10 0.14 -1.32 16 9 C 0.53 14.36 7.92 87.66 0.69 15.05 16 10 O -0.59 -22.60 16.32 -3.03 -0.05 -22.65 16 11 N -0.62 -15.64 3.31 -805.74 -2.66 -18.30 16 12 C 0.11 1.67 6.47 86.67 0.56 2.23 16 13 C -0.09 -1.92 3.97 -9.04 -0.04 -1.96 16 14 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 15 C -0.10 -1.97 6.36 31.61 0.20 -1.77 16 16 C -0.14 -4.36 6.57 31.85 0.21 -4.15 16 17 C 0.17 6.54 3.06 46.01 0.14 6.68 16 18 H 0.05 2.01 7.13 -2.38 -0.02 1.99 16 19 N -0.74 -37.02 5.20 -318.14 -1.65 -38.68 16 20 C -0.23 -13.00 9.96 84.04 0.84 -12.16 16 21 H 0.08 4.06 7.83 -2.91 -0.02 4.04 16 22 C -0.08 -4.70 5.50 84.86 0.47 -4.23 16 23 N -0.97 -60.67 13.06 21.65 0.28 -60.39 16 24 Si 0.97 46.85 29.55 68.60 2.03 48.88 16 25 H -0.29 -13.50 7.11 99.48 0.71 -12.80 16 26 H -0.30 -14.71 7.11 99.48 0.71 -14.00 16 27 H -0.27 -12.27 7.11 99.48 0.71 -11.57 16 28 C -0.10 -3.26 3.63 -9.18 -0.03 -3.30 16 29 H 0.06 2.28 7.83 -2.39 -0.02 2.27 16 30 C 0.12 3.76 6.57 86.54 0.57 4.33 16 31 C -0.12 -2.48 9.36 22.27 0.21 -2.27 16 32 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 34 H 0.07 0.61 8.14 -2.39 -0.02 0.59 16 35 H 0.07 1.02 8.09 -2.39 -0.02 1.00 16 36 H 0.08 1.00 8.09 -2.39 -0.02 0.99 16 37 H 0.14 1.91 8.06 -2.91 -0.02 1.89 16 38 H 0.14 2.04 8.06 -2.91 -0.02 2.02 16 39 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 40 H 0.13 1.49 7.94 -2.38 -0.02 1.47 16 41 H 0.13 1.43 8.08 -2.39 -0.02 1.42 16 42 H 0.10 1.23 7.21 -2.39 -0.02 1.22 16 43 H 0.12 0.99 7.32 -2.39 -0.02 0.97 16 44 H 0.09 1.39 7.18 -2.38 -0.02 1.37 16 45 H 0.09 1.35 8.14 -2.39 -0.02 1.33 16 46 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 47 H 0.05 1.63 8.14 -2.39 -0.02 1.61 16 48 H 0.37 20.38 7.63 -92.71 -0.71 19.67 16 49 H 0.25 15.14 8.31 -92.71 -0.77 14.37 16 50 H 0.04 1.68 7.88 -2.39 -0.02 1.66 16 51 H 0.07 2.36 7.21 -2.39 -0.02 2.34 16 52 H 0.12 2.28 8.06 -2.91 -0.02 2.25 16 Total: -1.00 -76.70 414.80 3.45 -73.25 By element: Atomic # 1 Polarization: 33.00 SS G_CDS: 0.19 Total: 33.19 kcal Atomic # 6 Polarization: -20.63 SS G_CDS: 5.32 Total: -15.31 kcal Atomic # 7 Polarization: -113.33 SS G_CDS: -4.04 Total: -117.37 kcal Atomic # 8 Polarization: -22.60 SS G_CDS: -0.05 Total: -22.65 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -76.70 3.45 -73.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026298277.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.000 kcal (2) G-P(sol) polarization free energy of solvation -76.701 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.701 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.252 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.251 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds