Wall clock time and date at job start Wed Apr 1 2020 02:02:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99648 * 2 1 4 4 C 1.38214 * 119.99532 * 180.02562 * 3 2 1 5 5 C 1.38252 * 120.00258 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99678 * 179.70444 * 5 4 3 7 7 C 1.38207 * 120.00041 * 359.97080 * 5 4 3 8 8 C 1.50707 * 120.00086 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.46917 * 85.00649 * 8 7 5 10 10 O 1.21284 * 119.99897 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00228 * 180.02562 * 9 8 7 12 12 C 1.48352 * 128.18619 * 359.67257 * 11 9 8 13 13 C 1.54921 * 104.06538 * 138.26881 * 12 11 9 14 14 H 1.08996 * 112.54356 * 263.88773 * 13 12 11 15 15 C 1.53558 * 108.94038 * 139.48731 * 13 12 11 16 16 C 1.53957 * 106.02938 * 229.12275 * 15 13 12 17 17 C 1.53952 * 104.88889 * 29.56134 * 16 15 13 18 18 H 1.09005 * 110.20091 * 211.26737 * 17 16 15 19 19 N 1.46499 * 110.14356 * 89.58205 * 17 16 15 20 20 C 1.36933 * 120.00404 * 138.14824 * 19 17 16 21 21 H 1.07996 * 120.00117 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00156 * 180.02562 * 20 19 17 23 23 N 1.31621 * 120.00188 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00292 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46694 * 59.99867 * 24 22 20 26 26 H 1.48493 * 109.47220 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46877 * 300.00392 * 24 22 20 28 28 C 1.53561 * 106.03243 * 330.43933 * 17 16 15 29 29 H 1.09003 * 111.66295 * 254.94167 * 28 17 16 30 30 C 1.48349 * 128.19851 * 180.02562 * 11 9 8 31 31 C 1.38214 * 120.00300 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46478 * 90.00589 * 1 2 3 33 33 H 1.08995 * 109.46882 * 210.00324 * 1 2 3 34 34 H 1.08995 * 109.47167 * 330.00832 * 1 2 3 35 35 H 1.08000 * 120.00369 * 359.97438 * 3 2 1 36 36 H 1.08012 * 119.99681 * 179.97438 * 4 3 2 37 37 H 1.09005 * 109.47238 * 90.00136 * 6 5 4 38 38 H 1.09004 * 109.47034 * 209.99284 * 6 5 4 39 39 H 1.08992 * 109.47632 * 329.99550 * 6 5 4 40 40 H 1.08996 * 109.46792 * 205.00819 * 8 7 5 41 41 H 1.09003 * 109.46976 * 325.00592 * 8 7 5 42 42 H 1.08997 * 110.47230 * 256.99996 * 12 11 9 43 43 H 1.08998 * 110.47246 * 19.60458 * 12 11 9 44 44 H 1.09004 * 110.14185 * 109.98129 * 15 13 12 45 45 H 1.09002 * 110.19613 * 348.28946 * 15 13 12 46 46 H 1.09001 * 110.35609 * 270.71066 * 16 15 13 47 47 H 1.09005 * 110.44721 * 148.46167 * 16 15 13 48 48 H 0.97000 * 119.99866 * 318.14676 * 19 17 16 49 49 H 0.96996 * 120.00200 * 179.97438 * 23 22 20 50 50 H 1.09005 * 110.46324 * 340.39613 * 30 11 9 51 51 H 1.08997 * 110.46922 * 102.99473 * 30 11 9 52 52 H 1.08005 * 119.99485 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 5.7787 0.0002 -0.0079 7 6 3.5807 -1.1968 0.0006 8 6 4.3343 -2.5020 0.0012 9 6 4.6931 -2.8741 1.4167 10 8 4.3693 -2.1505 2.3346 11 7 5.3748 -4.0105 1.6626 12 6 5.8528 -5.0223 0.6886 13 6 7.2744 -5.3831 1.1876 14 1 8.0533 -4.8207 0.6726 15 6 7.4823 -6.8980 1.0473 16 6 8.0333 -7.3787 2.4022 17 6 7.4408 -6.4058 3.4378 18 1 8.1301 -6.2790 4.2726 19 7 6.1515 -6.9067 3.9207 20 6 5.8414 -6.8275 5.2521 21 1 6.5473 -6.3961 5.9463 22 6 4.6200 -7.3026 5.7097 23 7 3.7597 -7.8288 4.8638 24 14 4.1971 -7.1952 7.5261 25 1 4.2123 -5.7734 7.9545 26 1 2.8453 -7.7659 7.7541 27 1 5.1973 -7.9601 8.3132 28 6 7.2480 -5.0708 2.7039 29 1 8.0043 -4.3405 2.9917 30 6 5.8185 -4.5491 2.9717 31 6 2.1982 -1.1969 -0.0005 32 1 -0.3632 -0.0001 -1.0277 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5137 35 1 1.6583 2.1327 -0.0004 36 1 4.1204 2.1328 -0.0010 37 1 6.1471 0.0031 1.0181 38 1 6.1396 -0.8913 -0.5209 39 1 6.1395 0.8886 -0.5259 40 1 3.7092 -3.2826 -0.4324 41 1 5.2448 -2.3961 -0.5887 42 1 5.2070 -5.9002 0.7030 43 1 5.8960 -4.5960 -0.3137 44 1 8.2009 -7.1065 0.2546 45 1 6.5336 -7.3898 0.8323 46 1 9.1219 -7.3238 2.4098 47 1 7.7043 -8.3975 2.6073 48 1 5.5176 -7.2945 3.2973 49 1 2.9064 -8.1611 5.1836 50 1 5.8352 -3.7594 3.7228 51 1 5.1680 -5.3643 3.2887 52 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026346374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:59 Heat of formation + Delta-G solvation = 0.381502 kcal Electronic energy + Delta-G solvation = -30539.918220 eV Core-core repulsion = 26696.969946 eV Total energy + Delta-G solvation = -3842.948274 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.29223 -39.57418 -38.03151 -34.87933 -34.21565 -33.39648 -32.36031 -30.92587 -29.50230 -29.33258 -28.21485 -27.50824 -25.11229 -24.82049 -23.60501 -23.16200 -22.08503 -20.38351 -19.75655 -18.61022 -18.45195 -17.49414 -16.77688 -16.14769 -15.88699 -15.52330 -15.25615 -15.05191 -14.54650 -14.44198 -14.06547 -13.87113 -13.51227 -13.36075 -13.21937 -13.03107 -12.90421 -12.76573 -12.69324 -12.58081 -12.33535 -11.99351 -11.84469 -11.65835 -11.46199 -11.27394 -11.01585 -10.95574 -10.85755 -10.81495 -10.69858 -10.48056 -10.26416 -10.19650 -10.08064 -9.91242 -9.62355 -9.44959 -8.99560 -8.72039 -8.36061 -8.17280 -6.96250 -5.82322 -3.11665 1.34534 1.41770 3.01229 3.35263 3.43861 3.48996 3.49735 3.80072 4.56486 4.62369 4.71878 4.74167 4.82736 4.85137 4.98103 5.02114 5.08375 5.15943 5.22852 5.38467 5.40463 5.48599 5.50395 5.53513 5.55800 5.64440 5.66291 5.66898 5.71467 5.72411 5.78399 5.88683 5.94206 6.05169 6.07188 6.10669 6.13769 6.20837 6.21777 6.34267 6.43197 6.44399 6.55256 6.58437 6.63988 6.67429 6.69715 6.89211 6.92418 7.04837 7.27009 7.68141 8.04431 8.35853 8.58196 9.47870 10.01757 10.36484 11.39291 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011123 B = 0.003148 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.617175 B = 8892.868687 C =10479.862797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.094 4.094 3 C -0.120 4.120 4 C -0.118 4.118 5 C -0.074 4.074 6 C -0.116 4.116 7 C -0.057 4.057 8 C -0.101 4.101 9 C 0.531 3.469 10 O -0.538 6.538 11 N -0.623 5.623 12 C 0.107 3.893 13 C -0.099 4.099 14 H 0.076 0.924 15 C -0.113 4.113 16 C -0.134 4.134 17 C 0.177 3.823 18 H 0.062 0.938 19 N -0.710 5.710 20 C -0.247 4.247 21 H 0.071 0.929 22 C -0.007 4.007 23 N -0.930 5.930 24 Si 0.905 3.095 25 H -0.285 1.285 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.124 4.124 29 H 0.069 0.931 30 C 0.103 3.897 31 C -0.103 4.103 32 H 0.067 0.933 33 H 0.066 0.934 34 H 0.064 0.936 35 H 0.118 0.882 36 H 0.119 0.881 37 H 0.073 0.927 38 H 0.065 0.935 39 H 0.063 0.937 40 H 0.097 0.903 41 H 0.100 0.900 42 H 0.077 0.923 43 H 0.067 0.933 44 H 0.056 0.944 45 H 0.067 0.933 46 H 0.057 0.943 47 H 0.071 0.929 48 H 0.385 0.615 49 H 0.257 0.743 50 H 0.063 0.937 51 H 0.130 0.870 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.846 11.763 -16.236 20.250 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.094 4.094 3 C -0.138 4.138 4 C -0.136 4.136 5 C -0.074 4.074 6 C -0.173 4.173 7 C -0.058 4.058 8 C -0.141 4.141 9 C 0.319 3.681 10 O -0.415 6.415 11 N -0.357 5.357 12 C -0.016 4.016 13 C -0.118 4.118 14 H 0.095 0.905 15 C -0.151 4.151 16 C -0.173 4.173 17 C 0.065 3.935 18 H 0.080 0.920 19 N -0.350 5.350 20 C -0.378 4.378 21 H 0.089 0.911 22 C -0.204 4.204 23 N -0.578 5.578 24 Si 0.735 3.265 25 H -0.211 1.211 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.146 4.146 29 H 0.088 0.912 30 C -0.018 4.018 31 C -0.121 4.121 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.083 0.917 35 H 0.136 0.864 36 H 0.137 0.863 37 H 0.091 0.909 38 H 0.083 0.917 39 H 0.082 0.918 40 H 0.116 0.884 41 H 0.118 0.882 42 H 0.095 0.905 43 H 0.085 0.915 44 H 0.075 0.925 45 H 0.085 0.915 46 H 0.076 0.924 47 H 0.090 0.910 48 H 0.220 0.780 49 H 0.066 0.934 50 H 0.082 0.918 51 H 0.147 0.853 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 2.559 12.250 -15.542 19.954 hybrid contribution -0.443 -0.099 0.792 0.913 sum 2.116 12.151 -14.750 19.228 Atomic orbital electron populations 1.20764 0.91340 1.02803 1.01987 1.19820 0.95934 0.93077 1.00534 1.20942 0.94127 0.97299 1.01439 1.20913 0.94139 0.97192 1.01394 1.19647 0.95839 0.92578 0.99366 1.20836 0.91546 1.02214 1.02670 1.19125 0.93329 0.93236 1.00077 1.20689 1.01613 0.96107 0.95704 1.19909 0.77832 0.79775 0.90577 1.90718 1.53740 1.50664 1.46402 1.49300 1.55008 1.20593 1.10798 1.22754 0.94889 0.91883 0.92083 1.22595 0.95635 0.96655 0.96916 0.90519 1.22109 1.01037 0.94151 0.97783 1.22613 0.99185 1.00653 0.94844 1.20715 0.88978 0.89755 0.94044 0.91975 1.42509 1.14804 1.71208 1.06513 1.19224 0.99992 1.34045 0.84569 0.91087 1.24714 0.96880 1.01103 0.97670 1.69629 1.08990 1.45866 1.33285 0.86306 0.77262 0.77743 0.85141 1.21137 1.21719 1.21262 1.23225 0.97095 1.00198 0.94130 0.91208 1.23191 0.95627 0.99757 0.83204 1.20862 0.93298 0.97687 1.00214 0.91424 0.91511 0.91714 0.86385 0.86281 0.90864 0.91650 0.91768 0.88432 0.88204 0.90473 0.91462 0.92517 0.91461 0.92428 0.91027 0.78033 0.93368 0.91793 0.85268 0.86216 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.07 10.01 36.01 0.36 -0.71 16 2 C -0.09 -1.15 5.88 -104.62 -0.62 -1.76 16 3 C -0.12 -1.40 9.70 -39.58 -0.38 -1.78 16 4 C -0.12 -1.42 9.70 -39.58 -0.38 -1.80 16 5 C -0.07 -0.97 5.88 -104.63 -0.62 -1.59 16 6 C -0.12 -1.29 9.61 36.01 0.35 -0.94 16 7 C -0.06 -0.79 4.37 -104.62 -0.46 -1.25 16 8 C -0.10 -1.31 4.32 -29.04 -0.13 -1.43 16 9 C 0.53 9.26 7.92 -10.99 -0.09 9.17 16 10 O -0.54 -11.74 16.32 5.55 0.09 -11.65 16 11 N -0.62 -10.56 3.31 -168.56 -0.56 -11.12 16 12 C 0.11 1.44 6.46 -2.01 -0.01 1.43 16 13 C -0.10 -1.31 3.95 -88.35 -0.35 -1.66 16 14 H 0.08 0.90 8.14 -51.93 -0.42 0.47 16 15 C -0.11 -1.46 6.37 -25.94 -0.17 -1.62 16 16 C -0.13 -2.01 6.50 -25.74 -0.17 -2.18 16 17 C 0.18 3.21 3.54 -67.14 -0.24 2.98 16 18 H 0.06 1.17 7.90 -51.93 -0.41 0.76 16 19 N -0.71 -16.17 2.88 -52.66 -0.15 -16.32 16 20 C -0.25 -6.48 9.45 -15.06 -0.14 -6.62 16 21 H 0.07 1.83 7.74 -52.49 -0.41 1.42 16 22 C -0.01 -0.20 5.50 -17.43 -0.10 -0.29 16 23 N -0.93 -26.97 13.06 55.49 0.72 -26.24 16 24 Si 0.90 22.20 29.55 -169.99 -5.02 17.17 16 25 H -0.28 -7.02 7.11 56.52 0.40 -6.62 16 26 H -0.29 -7.25 7.11 56.52 0.40 -6.85 16 27 H -0.29 -6.89 7.11 56.52 0.40 -6.49 16 28 C -0.12 -2.05 3.93 -88.57 -0.35 -2.40 16 29 H 0.07 1.11 8.14 -51.93 -0.42 0.69 16 30 C 0.10 2.04 6.27 -2.23 -0.01 2.02 16 31 C -0.10 -1.38 9.34 -39.59 -0.37 -1.75 16 32 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 33 H 0.07 0.64 8.09 -51.93 -0.42 0.22 16 34 H 0.06 0.55 8.09 -51.93 -0.42 0.13 16 35 H 0.12 1.09 8.06 -52.49 -0.42 0.67 16 36 H 0.12 1.15 8.06 -52.48 -0.42 0.73 16 37 H 0.07 0.92 8.14 -51.93 -0.42 0.50 16 38 H 0.06 0.66 6.02 -51.93 -0.31 0.34 16 39 H 0.06 0.57 8.08 -51.93 -0.42 0.15 16 40 H 0.10 1.09 8.05 -51.93 -0.42 0.67 16 41 H 0.10 1.05 6.00 -51.93 -0.31 0.74 16 42 H 0.08 1.09 7.22 -51.93 -0.37 0.72 16 43 H 0.07 0.70 7.32 -51.93 -0.38 0.32 16 44 H 0.06 0.61 8.14 -51.93 -0.42 0.19 16 45 H 0.07 0.91 7.13 -51.93 -0.37 0.54 16 46 H 0.06 0.76 8.14 -51.93 -0.42 0.34 16 47 H 0.07 1.18 8.09 -51.93 -0.42 0.76 16 48 H 0.38 9.36 7.62 -40.82 -0.31 9.05 16 49 H 0.26 7.33 8.31 -40.82 -0.34 6.99 16 50 H 0.06 1.41 7.88 -51.93 -0.41 1.00 16 51 H 0.13 3.03 5.19 -51.93 -0.27 2.76 16 52 H 0.12 1.49 8.06 -52.48 -0.42 1.07 16 LS Contribution 406.89 15.07 6.13 6.13 Total: -1.00 -31.59 406.89 -11.24 -42.84 By element: Atomic # 1 Polarization: 19.99 SS G_CDS: -8.59 Total: 11.39 kcal Atomic # 6 Polarization: -8.34 SS G_CDS: -3.86 Total: -12.20 kcal Atomic # 7 Polarization: -53.70 SS G_CDS: 0.02 Total: -53.69 kcal Atomic # 8 Polarization: -11.74 SS G_CDS: 0.09 Total: -11.65 kcal Atomic # 14 Polarization: 22.20 SS G_CDS: -5.02 Total: 17.17 kcal Total LS contribution 6.13 Total: 6.13 kcal Total: -31.59 -11.24 -42.84 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026346374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 43.218 kcal (2) G-P(sol) polarization free energy of solvation -31.593 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 11.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.243 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.837 kcal (6) G-S(sol) free energy of system = (1) + (5) 0.382 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds