Wall clock time and date at job start Wed Apr 1 2020 02:02:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99648 * 2 1 4 4 C 1.38214 * 119.99532 * 180.02562 * 3 2 1 5 5 C 1.38252 * 120.00258 * 359.97438 * 4 3 2 6 6 C 1.50702 * 119.99678 * 179.70444 * 5 4 3 7 7 C 1.38207 * 120.00041 * 359.97080 * 5 4 3 8 8 C 1.50707 * 120.00086 * 180.02562 * 7 5 4 9 9 C 1.50693 * 109.46917 * 85.00649 * 8 7 5 10 10 O 1.21284 * 119.99897 * 359.97438 * 9 8 7 11 11 N 1.34778 * 120.00228 * 180.02562 * 9 8 7 12 12 C 1.48352 * 128.18619 * 359.67257 * 11 9 8 13 13 C 1.54921 * 104.06538 * 138.26881 * 12 11 9 14 14 H 1.08996 * 112.54356 * 263.88773 * 13 12 11 15 15 C 1.53558 * 108.94038 * 139.48731 * 13 12 11 16 16 C 1.53957 * 106.02938 * 229.12275 * 15 13 12 17 17 C 1.53952 * 104.88889 * 29.56134 * 16 15 13 18 18 H 1.09005 * 110.20091 * 211.26737 * 17 16 15 19 19 N 1.46499 * 110.14356 * 89.58205 * 17 16 15 20 20 C 1.36933 * 120.00404 * 138.14824 * 19 17 16 21 21 H 1.07996 * 120.00117 * 359.97438 * 20 19 17 22 22 C 1.38812 * 120.00156 * 180.02562 * 20 19 17 23 23 N 1.31621 * 120.00188 * 359.97438 * 22 20 19 24 24 Si 1.86804 * 120.00292 * 179.97438 * 22 20 19 25 25 H 1.48497 * 109.46694 * 59.99867 * 24 22 20 26 26 H 1.48493 * 109.47220 * 179.97438 * 24 22 20 27 27 H 1.48498 * 109.46877 * 300.00392 * 24 22 20 28 28 C 1.53561 * 106.03243 * 330.43933 * 17 16 15 29 29 H 1.09003 * 111.66295 * 254.94167 * 28 17 16 30 30 C 1.48349 * 128.19851 * 180.02562 * 11 9 8 31 31 C 1.38214 * 120.00300 * 180.02562 * 2 1 3 32 32 H 1.08999 * 109.46478 * 90.00589 * 1 2 3 33 33 H 1.08995 * 109.46882 * 210.00324 * 1 2 3 34 34 H 1.08995 * 109.47167 * 330.00832 * 1 2 3 35 35 H 1.08000 * 120.00369 * 359.97438 * 3 2 1 36 36 H 1.08012 * 119.99681 * 179.97438 * 4 3 2 37 37 H 1.09005 * 109.47238 * 90.00136 * 6 5 4 38 38 H 1.09004 * 109.47034 * 209.99284 * 6 5 4 39 39 H 1.08992 * 109.47632 * 329.99550 * 6 5 4 40 40 H 1.08996 * 109.46792 * 205.00819 * 8 7 5 41 41 H 1.09003 * 109.46976 * 325.00592 * 8 7 5 42 42 H 1.08997 * 110.47230 * 256.99996 * 12 11 9 43 43 H 1.08998 * 110.47246 * 19.60458 * 12 11 9 44 44 H 1.09004 * 110.14185 * 109.98129 * 15 13 12 45 45 H 1.09002 * 110.19613 * 348.28946 * 15 13 12 46 46 H 1.09001 * 110.35609 * 270.71066 * 16 15 13 47 47 H 1.09005 * 110.44721 * 148.46167 * 16 15 13 48 48 H 0.97000 * 119.99866 * 318.14676 * 19 17 16 49 49 H 0.96996 * 120.00200 * 179.97438 * 23 22 20 50 50 H 1.09005 * 110.46324 * 340.39613 * 30 11 9 51 51 H 1.08997 * 110.46922 * 102.99473 * 30 11 9 52 52 H 1.08005 * 119.99485 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 -0.0005 5 6 4.2717 0.0001 -0.0005 6 6 5.7787 0.0002 -0.0079 7 6 3.5807 -1.1968 0.0006 8 6 4.3343 -2.5020 0.0012 9 6 4.6931 -2.8741 1.4167 10 8 4.3693 -2.1505 2.3346 11 7 5.3748 -4.0105 1.6626 12 6 5.8528 -5.0223 0.6886 13 6 7.2744 -5.3831 1.1876 14 1 8.0533 -4.8207 0.6726 15 6 7.4823 -6.8980 1.0473 16 6 8.0333 -7.3787 2.4022 17 6 7.4408 -6.4058 3.4378 18 1 8.1301 -6.2790 4.2726 19 7 6.1515 -6.9067 3.9207 20 6 5.8414 -6.8275 5.2521 21 1 6.5473 -6.3961 5.9463 22 6 4.6200 -7.3026 5.7097 23 7 3.7597 -7.8288 4.8638 24 14 4.1971 -7.1952 7.5261 25 1 4.2123 -5.7734 7.9545 26 1 2.8453 -7.7659 7.7541 27 1 5.1973 -7.9601 8.3132 28 6 7.2480 -5.0708 2.7039 29 1 8.0043 -4.3405 2.9917 30 6 5.8185 -4.5491 2.9717 31 6 2.1982 -1.1969 -0.0005 32 1 -0.3632 -0.0001 -1.0277 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5137 35 1 1.6583 2.1327 -0.0004 36 1 4.1204 2.1328 -0.0010 37 1 6.1471 0.0031 1.0181 38 1 6.1396 -0.8913 -0.5209 39 1 6.1395 0.8886 -0.5259 40 1 3.7092 -3.2826 -0.4324 41 1 5.2448 -2.3961 -0.5887 42 1 5.2070 -5.9002 0.7030 43 1 5.8960 -4.5960 -0.3137 44 1 8.2009 -7.1065 0.2546 45 1 6.5336 -7.3898 0.8323 46 1 9.1219 -7.3238 2.4098 47 1 7.7043 -8.3975 2.6073 48 1 5.5176 -7.2945 3.2973 49 1 2.9064 -8.1611 5.1836 50 1 5.8352 -3.7594 3.7228 51 1 5.1680 -5.3643 3.2887 52 1 1.6581 -2.1323 -0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026346374.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:02:58 Heat of formation + Delta-G solvation = -15.950016 kcal Electronic energy + Delta-G solvation = -30540.626408 eV Core-core repulsion = 26696.969946 eV Total energy + Delta-G solvation = -3843.656462 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.28 seconds Orbital eigenvalues (eV) -41.53604 -40.65534 -39.35041 -36.44683 -35.13867 -35.05312 -33.34068 -32.67370 -30.80486 -30.15103 -29.72174 -28.58707 -26.60144 -25.69483 -25.21499 -24.62265 -23.05335 -21.39461 -21.01178 -19.93406 -19.75770 -19.38767 -18.10999 -17.24571 -16.87151 -16.79212 -16.66554 -16.44016 -16.00030 -15.61944 -15.35852 -15.13462 -15.01259 -14.66542 -14.19273 -14.09103 -14.05171 -13.94897 -13.77730 -13.66061 -13.50688 -13.12357 -13.04478 -12.84771 -12.79565 -12.74703 -12.37704 -12.33822 -12.22766 -12.18378 -11.89681 -11.84486 -11.74844 -11.52040 -11.39440 -11.32868 -11.30139 -10.94868 -10.82101 -9.69246 -9.67456 -9.27905 -8.86855 -7.94759 -5.19866 0.39970 0.47621 1.43900 1.46755 1.51024 1.67374 2.09457 2.54927 2.82330 3.38575 3.49664 3.63197 3.67711 3.82072 3.88140 3.98732 4.03762 4.11845 4.17681 4.22921 4.35705 4.41633 4.43690 4.49697 4.53103 4.56362 4.63372 4.68936 4.71371 4.78874 4.80638 4.82153 4.83545 4.88483 4.89951 4.93692 5.09474 5.09856 5.13447 5.20820 5.23028 5.31620 5.36938 5.46181 5.49529 5.52020 5.52987 5.63270 5.68208 5.69649 5.73368 6.15211 6.28249 6.72815 7.22334 7.35701 8.12082 8.34225 9.27434 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011123 B = 0.003148 C = 0.002671 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2516.617175 B = 8892.868687 C =10479.862797 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.106 4.106 3 C -0.127 4.127 4 C -0.127 4.127 5 C -0.092 4.092 6 C -0.113 4.113 7 C -0.079 4.079 8 C -0.089 4.089 9 C 0.524 3.476 10 O -0.593 6.593 11 N -0.624 5.624 12 C 0.104 3.896 13 C -0.086 4.086 14 H 0.111 0.889 15 C -0.106 4.106 16 C -0.126 4.126 17 C 0.166 3.834 18 H 0.052 0.948 19 N -0.716 5.716 20 C -0.235 4.235 21 H 0.071 0.929 22 C -0.067 4.067 23 N -0.963 5.963 24 Si 0.957 3.043 25 H -0.289 1.289 26 H -0.297 1.297 27 H -0.275 1.275 28 C -0.116 4.116 29 H 0.079 0.921 30 C 0.107 3.893 31 C -0.126 4.126 32 H 0.084 0.916 33 H 0.060 0.940 34 H 0.075 0.925 35 H 0.142 0.858 36 H 0.141 0.859 37 H 0.051 0.949 38 H 0.077 0.923 39 H 0.086 0.914 40 H 0.116 0.884 41 H 0.132 0.868 42 H 0.067 0.933 43 H 0.112 0.888 44 H 0.093 0.907 45 H 0.057 0.943 46 H 0.085 0.915 47 H 0.053 0.947 48 H 0.376 0.624 49 H 0.249 0.751 50 H 0.025 0.975 51 H 0.090 0.910 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.636 12.698 -19.044 23.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.106 4.106 3 C -0.144 4.144 4 C -0.145 4.145 5 C -0.092 4.092 6 C -0.169 4.169 7 C -0.079 4.079 8 C -0.128 4.128 9 C 0.315 3.685 10 O -0.474 6.474 11 N -0.357 5.357 12 C -0.018 4.018 13 C -0.105 4.105 14 H 0.129 0.871 15 C -0.143 4.143 16 C -0.165 4.165 17 C 0.057 3.943 18 H 0.070 0.930 19 N -0.355 5.355 20 C -0.367 4.367 21 H 0.089 0.911 22 C -0.260 4.260 23 N -0.613 5.613 24 Si 0.787 3.213 25 H -0.216 1.216 26 H -0.224 1.224 27 H -0.202 1.202 28 C -0.138 4.138 29 H 0.097 0.903 30 C -0.016 4.016 31 C -0.144 4.144 32 H 0.103 0.897 33 H 0.079 0.921 34 H 0.094 0.906 35 H 0.160 0.840 36 H 0.159 0.841 37 H 0.070 0.930 38 H 0.096 0.904 39 H 0.105 0.895 40 H 0.134 0.866 41 H 0.149 0.851 42 H 0.085 0.915 43 H 0.130 0.870 44 H 0.112 0.888 45 H 0.076 0.924 46 H 0.103 0.897 47 H 0.071 0.929 48 H 0.209 0.791 49 H 0.057 0.943 50 H 0.044 0.956 51 H 0.108 0.892 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges 4.414 13.175 -18.384 23.044 hybrid contribution -0.967 -0.308 1.691 1.972 sum 3.447 12.868 -16.693 21.357 Atomic orbital electron populations 1.20799 0.89671 1.03078 1.03149 1.20192 0.97397 0.93007 1.00004 1.21301 0.94380 0.98106 1.00653 1.21282 0.94616 0.97878 1.00718 1.19987 0.97000 0.92780 0.99462 1.20835 0.90322 1.04000 1.01739 1.19347 0.93669 0.93958 1.00928 1.20683 1.03235 0.96335 0.92512 1.20811 0.76600 0.79066 0.92038 1.90685 1.55746 1.52474 1.48518 1.49402 1.54724 1.21142 1.10384 1.22999 0.94571 0.90888 0.93320 1.22627 0.96413 0.97417 0.94010 0.87061 1.22087 1.01523 0.93360 0.97353 1.22502 1.00619 0.98502 0.94852 1.21015 0.86817 0.91490 0.95025 0.93004 1.42565 1.16410 1.71389 1.05151 1.19528 0.99437 1.31576 0.86182 0.91109 1.25336 0.97393 1.02480 1.00814 1.69759 1.09116 1.47985 1.34451 0.85451 0.76780 0.77280 0.81741 1.21580 1.22371 1.20150 1.23097 0.94855 0.98914 0.96919 0.90311 1.22788 0.97286 0.97242 0.84278 1.21091 0.93722 0.98389 1.01221 0.89743 0.92077 0.90585 0.84005 0.84126 0.92999 0.90417 0.89508 0.86571 0.85071 0.91466 0.87005 0.88799 0.92388 0.89693 0.92851 0.79119 0.94260 0.95649 0.89220 0.86236 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.99 10.01 71.24 0.71 -1.27 16 2 C -0.11 -2.53 5.88 -19.86 -0.12 -2.65 16 3 C -0.13 -2.78 9.70 22.27 0.22 -2.56 16 4 C -0.13 -2.87 9.70 22.27 0.22 -2.66 16 5 C -0.09 -2.31 5.88 -19.87 -0.12 -2.43 16 6 C -0.11 -2.30 9.61 71.24 0.68 -1.62 16 7 C -0.08 -2.12 4.37 -19.87 -0.09 -2.21 16 8 C -0.09 -2.14 4.32 29.10 0.13 -2.01 16 9 C 0.52 18.31 7.92 87.65 0.69 19.01 16 10 O -0.59 -27.01 16.32 -3.04 -0.05 -27.06 16 11 N -0.62 -20.95 3.31 -805.59 -2.66 -23.62 16 12 C 0.10 2.51 6.46 86.68 0.56 3.07 16 13 C -0.09 -1.96 3.95 -9.32 -0.04 -2.00 16 14 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 15 C -0.11 -2.33 6.37 31.10 0.20 -2.13 16 16 C -0.13 -3.50 6.50 31.24 0.20 -3.30 16 17 C 0.17 5.99 3.54 45.50 0.16 6.15 16 18 H 0.05 1.94 7.90 -2.38 -0.02 1.92 16 19 N -0.72 -33.57 2.88 -320.52 -0.92 -34.50 16 20 C -0.24 -12.71 9.45 84.03 0.79 -11.92 16 21 H 0.07 3.75 7.74 -2.91 -0.02 3.73 16 22 C -0.07 -3.85 5.50 84.86 0.47 -3.38 16 23 N -0.96 -58.07 13.06 21.65 0.28 -57.79 16 24 Si 0.96 47.11 29.55 68.60 2.03 49.14 16 25 H -0.29 -14.22 7.11 99.48 0.71 -13.52 16 26 H -0.30 -14.82 7.11 99.48 0.71 -14.11 16 27 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 28 C -0.12 -3.71 3.93 -9.46 -0.04 -3.75 16 29 H 0.08 2.40 8.14 -2.39 -0.02 2.38 16 30 C 0.11 4.38 6.27 86.54 0.54 4.92 16 31 C -0.13 -3.40 9.34 22.27 0.21 -3.19 16 32 H 0.08 1.22 8.14 -2.39 -0.02 1.20 16 33 H 0.06 1.15 8.09 -2.39 -0.02 1.13 16 34 H 0.08 1.18 8.09 -2.39 -0.02 1.16 16 35 H 0.14 2.31 8.06 -2.91 -0.02 2.29 16 36 H 0.14 2.43 8.06 -2.90 -0.02 2.41 16 37 H 0.05 1.28 8.14 -2.38 -0.02 1.26 16 38 H 0.08 1.34 6.02 -2.39 -0.01 1.32 16 39 H 0.09 1.32 8.08 -2.39 -0.02 1.30 16 40 H 0.12 2.35 8.05 -2.39 -0.02 2.33 16 41 H 0.13 2.28 6.00 -2.39 -0.01 2.27 16 42 H 0.07 1.79 7.22 -2.39 -0.02 1.78 16 43 H 0.11 1.76 7.32 -2.39 -0.02 1.74 16 44 H 0.09 1.48 8.14 -2.38 -0.02 1.46 16 45 H 0.06 1.42 7.13 -2.39 -0.02 1.40 16 46 H 0.08 1.93 8.14 -2.39 -0.02 1.91 16 47 H 0.05 1.70 8.09 -2.38 -0.02 1.68 16 48 H 0.38 18.96 7.62 -92.71 -0.71 18.26 16 49 H 0.25 14.82 8.31 -92.71 -0.77 14.05 16 50 H 0.02 1.18 7.88 -2.38 -0.02 1.17 16 51 H 0.09 4.46 5.19 -2.39 -0.01 4.45 16 52 H 0.12 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -74.37 406.89 4.27 -70.10 By element: Atomic # 1 Polarization: 37.46 SS G_CDS: 0.21 Total: 37.66 kcal Atomic # 6 Polarization: -19.33 SS G_CDS: 5.39 Total: -13.94 kcal Atomic # 7 Polarization: -112.60 SS G_CDS: -3.30 Total: -115.90 kcal Atomic # 8 Polarization: -27.01 SS G_CDS: -0.05 Total: -27.06 kcal Atomic # 14 Polarization: 47.11 SS G_CDS: 2.03 Total: 49.14 kcal Total: -74.37 4.27 -70.10 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026346374.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.151 kcal (2) G-P(sol) polarization free energy of solvation -74.370 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -20.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.101 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.950 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.28 seconds