Wall clock time and date at job start Wed Apr 1 2020 02:03:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99741 * 2 1 4 4 C 1.38214 * 119.99771 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99991 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00042 * 179.97438 * 5 4 3 7 7 C 1.38212 * 120.00130 * 0.02562 * 5 4 3 8 8 C 1.50702 * 120.00205 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46896 * 84.99704 * 8 7 5 10 10 O 1.21281 * 119.99800 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99823 * 180.02562 * 9 8 7 12 12 C 1.49217 * 126.05731 * 0.02642 * 11 9 8 13 13 C 1.50350 * 104.85768 * 172.93528 * 12 11 9 14 14 H 1.09001 * 110.04451 * 278.95287 * 13 12 11 15 15 C 1.50993 * 125.57051 * 143.74758 * 13 12 11 16 16 C 1.56398 * 101.59647 * 203.97454 * 15 13 12 17 17 C 1.55937 * 105.78680 * 25.01678 * 16 15 13 18 18 H 1.09006 * 110.49245 * 126.20957 * 17 16 15 19 19 N 1.46503 * 110.49644 * 248.73551 * 17 16 15 20 20 C 1.36931 * 119.99827 * 273.55172 * 19 17 16 21 21 H 1.07999 * 120.00750 * 359.97438 * 20 19 17 22 22 C 1.38814 * 119.99752 * 179.97438 * 20 19 17 23 23 N 1.31623 * 119.99969 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00130 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47023 * 89.99885 * 24 22 20 26 26 H 1.48504 * 109.46861 * 209.99693 * 24 22 20 27 27 H 1.48500 * 109.46945 * 329.99930 * 24 22 20 28 28 C 1.50333 * 103.80390 * 8.04639 * 17 16 15 29 29 H 1.09003 * 110.56023 * 79.88509 * 28 17 16 30 30 C 1.49693 * 126.05591 * 179.71985 * 11 9 8 31 31 C 1.38209 * 119.99935 * 179.72199 * 2 1 3 32 32 H 1.09001 * 109.46953 * 89.99972 * 1 2 3 33 33 H 1.09000 * 109.47318 * 209.99570 * 1 2 3 34 34 H 1.09000 * 109.47161 * 330.00200 * 1 2 3 35 35 H 1.07997 * 120.00249 * 359.97438 * 3 2 1 36 36 H 1.08003 * 120.00085 * 180.02562 * 4 3 2 37 37 H 1.09000 * 109.47179 * 90.00249 * 6 5 4 38 38 H 1.09006 * 109.47235 * 210.00457 * 6 5 4 39 39 H 1.09008 * 109.47333 * 329.99954 * 6 5 4 40 40 H 1.08998 * 109.46644 * 204.99908 * 8 7 5 41 41 H 1.08996 * 109.46915 * 324.99922 * 8 7 5 42 42 H 1.09007 * 110.36063 * 291.77291 * 12 11 9 43 43 H 1.08999 * 110.36353 * 53.97549 * 12 11 9 44 44 H 1.09007 * 111.00204 * 322.05683 * 15 13 12 45 45 H 1.09004 * 111.00352 * 85.85632 * 15 13 12 46 46 H 1.09004 * 110.18704 * 144.09184 * 16 15 13 47 47 H 1.08993 * 110.18565 * 265.93731 * 16 15 13 48 48 H 0.97003 * 119.99438 * 93.54354 * 19 17 16 49 49 H 0.97001 * 120.00102 * 180.02562 * 23 22 20 50 50 H 1.09006 * 110.84410 * 273.05347 * 30 11 9 51 51 H 1.09000 * 110.85054 * 36.66801 * 30 11 9 52 52 H 1.07997 * 120.00050 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0000 0.0016 7 6 3.5807 -1.1970 0.0016 8 6 4.3342 -2.5021 0.0022 9 6 4.6921 -2.8748 1.4179 10 8 4.3669 -2.1521 2.3359 11 7 5.3736 -4.0113 1.6637 12 6 5.8395 -4.9944 0.6424 13 6 6.6882 -5.9718 1.4071 14 1 7.6878 -5.5630 1.5547 15 6 6.7695 -7.4567 1.1458 16 6 7.2351 -7.9959 2.5381 17 6 6.7640 -6.9376 3.5821 18 1 6.1720 -7.4114 4.3652 19 7 7.9151 -6.2410 4.1617 20 6 8.5613 -6.7713 5.2462 21 1 8.2222 -7.7029 5.6746 22 6 9.6523 -6.1115 5.7950 23 7 10.0659 -4.9763 5.2726 24 14 10.5335 -6.8344 7.2750 25 1 11.6232 -7.7312 6.8128 26 1 11.1091 -5.7369 8.0931 27 1 9.5687 -7.6099 8.0954 28 6 5.9076 -5.9984 2.7793 29 1 4.9125 -6.4185 2.6324 30 6 5.8028 -4.5078 3.0091 31 6 2.1981 -1.1969 0.0058 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 1.6583 2.1327 -0.0004 36 1 4.1205 2.1327 0.0010 37 1 6.1420 0.0009 1.0293 38 1 6.1421 -0.8904 -0.5115 39 1 6.1421 0.8896 -0.5131 40 1 3.7094 -3.2824 -0.4322 41 1 5.2451 -2.3959 -0.5869 42 1 4.9884 -5.5038 0.1904 43 1 6.4315 -4.4936 -0.1237 44 1 5.7931 -7.8602 0.8772 45 1 7.5069 -7.6778 0.3741 46 1 6.7692 -8.9598 2.7432 47 1 8.3208 -8.0896 2.5613 48 1 8.2195 -5.4041 3.7770 49 1 10.8286 -4.5154 5.6559 50 1 6.7689 -4.0869 3.2877 51 1 5.0488 -4.2841 3.7638 52 1 1.6581 -2.1322 0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026346376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:03 Heat of formation + Delta-G solvation = 7.323242 kcal Electronic energy + Delta-G solvation = -30028.718170 eV Core-core repulsion = 26186.070912 eV Total energy + Delta-G solvation = -3842.647258 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.61319 -39.82378 -38.28967 -35.17335 -34.30734 -33.31259 -32.47194 -30.85244 -29.78101 -29.39944 -28.49663 -27.53250 -25.44104 -24.87582 -23.40867 -23.08329 -22.13995 -20.47000 -19.97888 -18.99013 -18.70856 -17.51189 -16.72334 -16.31574 -16.06430 -15.78960 -15.19344 -14.84988 -14.64267 -14.37317 -14.27754 -13.96605 -13.79224 -13.58352 -13.39490 -13.11890 -12.93171 -12.88677 -12.80782 -12.62634 -12.30563 -12.07353 -12.01754 -11.76912 -11.56580 -11.49303 -11.21143 -11.04214 -10.98010 -10.96448 -10.81960 -10.63308 -10.49633 -10.26363 -10.09168 -9.77885 -9.62043 -9.53475 -8.92491 -8.82127 -8.47174 -8.44076 -6.98328 -5.78669 -3.07607 1.25593 1.33077 2.80277 3.01990 3.42581 3.48246 3.49856 3.66847 4.20788 4.51484 4.57897 4.64211 4.75231 4.78350 4.90141 4.93323 5.00271 5.10352 5.21313 5.29648 5.31136 5.34108 5.40162 5.42389 5.47969 5.52336 5.56795 5.61286 5.63209 5.65651 5.66563 5.79912 5.81962 5.84420 5.92164 6.01895 6.04417 6.14414 6.15573 6.27143 6.30248 6.36167 6.38495 6.45467 6.49958 6.53719 6.59220 6.65979 6.82144 6.96022 7.04884 7.67664 7.70037 8.33339 8.39866 9.51166 10.07564 10.42030 11.43781 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.002429 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.509628 B =11522.843139 C =12344.342397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.118 4.118 4 C -0.117 4.117 5 C -0.071 4.071 6 C -0.119 4.119 7 C -0.061 4.061 8 C -0.100 4.100 9 C 0.529 3.471 10 O -0.533 6.533 11 N -0.626 5.626 12 C 0.121 3.879 13 C -0.129 4.129 14 H 0.090 0.910 15 C -0.095 4.095 16 C -0.145 4.145 17 C 0.193 3.807 18 H 0.053 0.947 19 N -0.717 5.717 20 C -0.239 4.239 21 H 0.071 0.929 22 C -0.012 4.012 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.290 1.290 26 H -0.292 1.292 27 H -0.282 1.282 28 C -0.119 4.119 29 H 0.076 0.924 30 C 0.130 3.870 31 C -0.103 4.103 32 H 0.067 0.933 33 H 0.064 0.936 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.075 0.925 38 H 0.065 0.935 39 H 0.065 0.935 40 H 0.098 0.902 41 H 0.103 0.897 42 H 0.066 0.934 43 H 0.069 0.931 44 H 0.060 0.940 45 H 0.060 0.940 46 H 0.052 0.948 47 H 0.076 0.924 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.084 0.916 51 H 0.075 0.925 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.221 5.750 -17.198 23.675 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.136 4.136 4 C -0.135 4.135 5 C -0.071 4.071 6 C -0.175 4.175 7 C -0.061 4.061 8 C -0.140 4.140 9 C 0.317 3.683 10 O -0.410 6.410 11 N -0.362 5.362 12 C -0.001 4.001 13 C -0.148 4.148 14 H 0.109 0.891 15 C -0.133 4.133 16 C -0.186 4.186 17 C 0.082 3.918 18 H 0.071 0.929 19 N -0.359 5.359 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.208 4.208 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.218 1.218 26 H -0.218 1.218 27 H -0.208 1.208 28 C -0.139 4.139 29 H 0.094 0.906 30 C 0.009 3.991 31 C -0.121 4.121 32 H 0.086 0.914 33 H 0.083 0.917 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.094 0.906 38 H 0.084 0.916 39 H 0.084 0.916 40 H 0.116 0.884 41 H 0.121 0.879 42 H 0.085 0.915 43 H 0.087 0.913 44 H 0.079 0.921 45 H 0.079 0.921 46 H 0.071 0.929 47 H 0.095 0.905 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.102 0.898 51 H 0.094 0.906 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.385 6.154 -16.543 23.414 hybrid contribution 0.753 -0.173 0.670 1.023 sum -14.632 5.981 -15.872 22.401 Atomic orbital electron populations 1.20757 0.91356 1.02713 1.01999 1.19809 0.95897 0.93103 1.00753 1.20957 0.94140 0.97333 1.01205 1.20948 0.94137 0.97309 1.01142 1.19689 0.95966 0.92560 0.98900 1.20869 0.91333 1.02405 1.02941 1.19120 0.93307 0.93216 1.00500 1.20689 1.01876 0.96119 0.95323 1.20054 0.77661 0.79708 0.90862 1.90735 1.53766 1.50102 1.46370 1.49914 1.55519 1.21822 1.08969 1.21267 0.97714 0.90290 0.90797 1.22226 1.00110 0.95800 0.96656 0.89139 1.21702 1.00548 0.92736 0.98287 1.23860 1.02280 0.98848 0.93644 1.20114 0.88494 0.90708 0.92492 0.92872 1.42403 1.32451 1.26185 1.34848 1.19226 1.08406 1.04466 1.04957 0.91117 1.24736 0.99113 0.97273 0.99706 1.69652 1.28352 1.17022 1.42991 0.86210 0.79686 0.77835 0.82566 1.21792 1.21827 1.20774 1.22535 0.99257 0.94855 0.97272 0.90591 1.21536 1.01093 0.93093 0.83369 1.20809 0.93209 0.97555 1.00511 0.91421 0.91651 0.91690 0.86335 0.86154 0.90615 0.91579 0.91614 0.88393 0.87901 0.91543 0.91263 0.92109 0.92099 0.92902 0.90541 0.78155 0.93491 0.89813 0.90634 0.86378 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.89 10.01 36.01 0.36 -0.53 16 2 C -0.10 -1.03 5.88 -104.62 -0.62 -1.65 16 3 C -0.12 -1.26 9.70 -39.58 -0.38 -1.64 16 4 C -0.12 -1.32 9.70 -39.58 -0.38 -1.70 16 5 C -0.07 -0.87 5.88 -104.63 -0.62 -1.49 16 6 C -0.12 -1.31 9.60 36.00 0.35 -0.96 16 7 C -0.06 -0.76 4.37 -104.62 -0.46 -1.21 16 8 C -0.10 -1.12 4.56 -29.03 -0.13 -1.25 16 9 C 0.53 8.05 7.87 -10.98 -0.09 7.97 16 10 O -0.53 -10.39 16.36 5.56 0.09 -10.30 16 11 N -0.63 -9.16 3.42 -171.39 -0.59 -9.75 16 12 C 0.12 1.40 6.41 -3.86 -0.02 1.38 16 13 C -0.13 -1.77 2.75 -90.27 -0.25 -2.02 16 14 H 0.09 1.48 7.68 -51.93 -0.40 1.08 16 15 C -0.09 -1.20 6.70 -25.91 -0.17 -1.37 16 16 C -0.15 -2.33 6.73 -23.33 -0.16 -2.49 16 17 C 0.19 3.58 3.42 -67.69 -0.23 3.35 16 18 H 0.05 1.02 8.11 -51.93 -0.42 0.60 16 19 N -0.72 -16.95 4.85 -53.19 -0.26 -17.21 16 20 C -0.24 -6.41 9.97 -15.06 -0.15 -6.56 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.43 16 22 C -0.01 -0.34 5.50 -17.43 -0.10 -0.44 16 23 N -0.93 -27.65 13.06 55.49 0.72 -26.92 16 24 Si 0.91 22.15 29.55 -169.99 -5.02 17.13 16 25 H -0.29 -7.07 7.11 56.52 0.40 -6.67 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.28 -6.73 7.11 56.52 0.40 -6.33 16 28 C -0.12 -1.87 2.62 -90.18 -0.24 -2.10 16 29 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 30 C 0.13 2.24 6.53 -3.17 -0.02 2.21 16 31 C -0.10 -1.20 9.34 -39.58 -0.37 -1.57 16 32 H 0.07 0.45 8.14 -51.93 -0.42 0.03 16 33 H 0.06 0.50 8.08 -51.93 -0.42 0.08 16 34 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.56 16 36 H 0.12 1.11 8.06 -52.48 -0.42 0.69 16 37 H 0.08 0.97 8.14 -51.93 -0.42 0.54 16 38 H 0.07 0.65 6.03 -51.93 -0.31 0.34 16 39 H 0.06 0.59 8.09 -51.92 -0.42 0.17 16 40 H 0.10 0.87 8.05 -51.93 -0.42 0.45 16 41 H 0.10 0.97 6.16 -51.93 -0.32 0.65 16 42 H 0.07 0.64 8.14 -51.92 -0.42 0.22 16 43 H 0.07 0.69 8.14 -51.93 -0.42 0.27 16 44 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 45 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 46 H 0.05 0.77 8.14 -51.93 -0.42 0.35 16 47 H 0.08 1.42 7.98 -51.93 -0.41 1.01 16 48 H 0.38 9.68 6.16 -40.82 -0.25 9.43 16 49 H 0.26 7.39 8.31 -40.82 -0.34 7.05 16 50 H 0.08 1.67 6.89 -51.93 -0.36 1.31 16 51 H 0.08 1.38 8.09 -51.93 -0.42 0.96 16 52 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 LS Contribution 410.98 15.07 6.19 6.19 Total: -1.00 -32.24 410.98 -11.31 -43.55 By element: Atomic # 1 Polarization: 18.16 SS G_CDS: -8.77 Total: 9.39 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -3.68 Total: -12.08 kcal Atomic # 7 Polarization: -53.76 SS G_CDS: -0.12 Total: -53.88 kcal Atomic # 8 Polarization: -10.39 SS G_CDS: 0.09 Total: -10.30 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.13 kcal Total LS contribution 6.19 Total: 6.19 kcal Total: -32.24 -11.31 -43.55 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026346376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 50.871 kcal (2) G-P(sol) polarization free energy of solvation -32.241 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 18.630 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.306 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.548 kcal (6) G-S(sol) free energy of system = (1) + (5) 7.323 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds