Wall clock time and date at job start Wed Apr 1 2020 02:03:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.38258 * 119.99741 * 2 1 4 4 C 1.38214 * 119.99771 * 179.97438 * 3 2 1 5 5 C 1.38261 * 119.99991 * 359.97438 * 4 3 2 6 6 C 1.50696 * 120.00042 * 179.97438 * 5 4 3 7 7 C 1.38212 * 120.00130 * 0.02562 * 5 4 3 8 8 C 1.50702 * 120.00205 * 179.97438 * 7 5 4 9 9 C 1.50703 * 109.46896 * 84.99704 * 8 7 5 10 10 O 1.21281 * 119.99800 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99823 * 180.02562 * 9 8 7 12 12 C 1.49217 * 126.05731 * 0.02642 * 11 9 8 13 13 C 1.50350 * 104.85768 * 172.93528 * 12 11 9 14 14 H 1.09001 * 110.04451 * 278.95287 * 13 12 11 15 15 C 1.50993 * 125.57051 * 143.74758 * 13 12 11 16 16 C 1.56398 * 101.59647 * 203.97454 * 15 13 12 17 17 C 1.55937 * 105.78680 * 25.01678 * 16 15 13 18 18 H 1.09006 * 110.49245 * 126.20957 * 17 16 15 19 19 N 1.46503 * 110.49644 * 248.73551 * 17 16 15 20 20 C 1.36931 * 119.99827 * 273.55172 * 19 17 16 21 21 H 1.07999 * 120.00750 * 359.97438 * 20 19 17 22 22 C 1.38814 * 119.99752 * 179.97438 * 20 19 17 23 23 N 1.31623 * 119.99969 * 359.97438 * 22 20 19 24 24 Si 1.86801 * 120.00130 * 179.97438 * 22 20 19 25 25 H 1.48496 * 109.47023 * 89.99885 * 24 22 20 26 26 H 1.48504 * 109.46861 * 209.99693 * 24 22 20 27 27 H 1.48500 * 109.46945 * 329.99930 * 24 22 20 28 28 C 1.50333 * 103.80390 * 8.04639 * 17 16 15 29 29 H 1.09003 * 110.56023 * 79.88509 * 28 17 16 30 30 C 1.49693 * 126.05591 * 179.71985 * 11 9 8 31 31 C 1.38209 * 119.99935 * 179.72199 * 2 1 3 32 32 H 1.09001 * 109.46953 * 89.99972 * 1 2 3 33 33 H 1.09000 * 109.47318 * 209.99570 * 1 2 3 34 34 H 1.09000 * 109.47161 * 330.00200 * 1 2 3 35 35 H 1.07997 * 120.00249 * 359.97438 * 3 2 1 36 36 H 1.08003 * 120.00085 * 180.02562 * 4 3 2 37 37 H 1.09000 * 109.47179 * 90.00249 * 6 5 4 38 38 H 1.09006 * 109.47235 * 210.00457 * 6 5 4 39 39 H 1.09008 * 109.47333 * 329.99954 * 6 5 4 40 40 H 1.08998 * 109.46644 * 204.99908 * 8 7 5 41 41 H 1.08996 * 109.46915 * 324.99922 * 8 7 5 42 42 H 1.09007 * 110.36063 * 291.77291 * 12 11 9 43 43 H 1.08999 * 110.36353 * 53.97549 * 12 11 9 44 44 H 1.09007 * 111.00204 * 322.05683 * 15 13 12 45 45 H 1.09004 * 111.00352 * 85.85632 * 15 13 12 46 46 H 1.09004 * 110.18704 * 144.09184 * 16 15 13 47 47 H 1.08993 * 110.18565 * 265.93731 * 16 15 13 48 48 H 0.97003 * 119.99438 * 93.54354 * 19 17 16 49 49 H 0.97001 * 120.00102 * 180.02562 * 23 22 20 50 50 H 1.09006 * 110.84410 * 273.05347 * 30 11 9 51 51 H 1.09000 * 110.85054 * 36.66801 * 30 11 9 52 52 H 1.07997 * 120.00050 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.1983 1.1974 0.0000 4 6 3.5804 1.1974 0.0005 5 6 4.2717 0.0000 0.0016 6 6 5.7787 0.0000 0.0016 7 6 3.5807 -1.1970 0.0016 8 6 4.3342 -2.5021 0.0022 9 6 4.6921 -2.8748 1.4179 10 8 4.3669 -2.1521 2.3359 11 7 5.3736 -4.0113 1.6637 12 6 5.8395 -4.9944 0.6424 13 6 6.6882 -5.9718 1.4071 14 1 7.6878 -5.5630 1.5547 15 6 6.7695 -7.4567 1.1458 16 6 7.2351 -7.9959 2.5381 17 6 6.7640 -6.9376 3.5821 18 1 6.1720 -7.4114 4.3652 19 7 7.9151 -6.2410 4.1617 20 6 8.5613 -6.7713 5.2462 21 1 8.2222 -7.7029 5.6746 22 6 9.6523 -6.1115 5.7950 23 7 10.0659 -4.9763 5.2726 24 14 10.5335 -6.8344 7.2750 25 1 11.6232 -7.7312 6.8128 26 1 11.1091 -5.7369 8.0931 27 1 9.5687 -7.6099 8.0954 28 6 5.9076 -5.9984 2.7793 29 1 4.9125 -6.4185 2.6324 30 6 5.8028 -4.5078 3.0091 31 6 2.1981 -1.1969 0.0058 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3634 -0.8900 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 1.6583 2.1327 -0.0004 36 1 4.1205 2.1327 0.0010 37 1 6.1420 0.0009 1.0293 38 1 6.1421 -0.8904 -0.5115 39 1 6.1421 0.8896 -0.5131 40 1 3.7094 -3.2824 -0.4322 41 1 5.2451 -2.3959 -0.5869 42 1 4.9884 -5.5038 0.1904 43 1 6.4315 -4.4936 -0.1237 44 1 5.7931 -7.8602 0.8772 45 1 7.5069 -7.6778 0.3741 46 1 6.7692 -8.9598 2.7432 47 1 8.3208 -8.0896 2.5613 48 1 8.2195 -5.4041 3.7770 49 1 10.8286 -4.5154 5.6559 50 1 6.7689 -4.0869 3.2877 51 1 5.0488 -4.2841 3.7638 52 1 1.6581 -2.1322 0.0099 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026346376.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:02 Heat of formation + Delta-G solvation = -10.050020 kcal Electronic energy + Delta-G solvation = -30029.471531 eV Core-core repulsion = 26186.070912 eV Total energy + Delta-G solvation = -3843.400619 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.79271 -40.77997 -39.45757 -36.64717 -35.13115 -35.02936 -33.34949 -32.58512 -31.01032 -30.14708 -29.90551 -28.50099 -26.90382 -25.65092 -25.17192 -24.36407 -23.02623 -21.37507 -21.11304 -20.33274 -19.88286 -19.41608 -17.89710 -17.45783 -17.08560 -16.70386 -16.63387 -16.14054 -15.76227 -15.74297 -15.50066 -15.23830 -14.91845 -14.81651 -14.57593 -14.17475 -13.94699 -13.82902 -13.71665 -13.61972 -13.50697 -13.22751 -13.17253 -12.85080 -12.78383 -12.74819 -12.63567 -12.38149 -12.35092 -12.22961 -12.03220 -11.82791 -11.82572 -11.74213 -11.51013 -11.39453 -11.04003 -10.89480 -10.79731 -9.69683 -9.67320 -9.27019 -8.97023 -7.93402 -5.20467 0.40713 0.49464 1.46124 1.47394 1.55525 1.64708 1.89004 2.56359 2.81009 3.02103 3.40975 3.63045 3.75884 3.78110 3.87658 3.98907 4.02186 4.06252 4.12111 4.21279 4.25017 4.34564 4.37943 4.47600 4.49756 4.51961 4.58846 4.63823 4.70033 4.71614 4.74428 4.77831 4.83447 4.85236 4.86602 4.89781 4.97380 5.05104 5.10135 5.11749 5.22063 5.24556 5.25133 5.37517 5.40706 5.46229 5.53581 5.55403 5.70182 5.70392 5.74562 6.16156 6.29470 6.54641 7.16393 7.35331 8.13361 8.34886 9.30105 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015757 B = 0.002429 C = 0.002268 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1776.509628 B =11522.843139 C =12344.342397 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.110 4.110 2 C -0.105 4.105 3 C -0.127 4.127 4 C -0.130 4.130 5 C -0.094 4.094 6 C -0.116 4.116 7 C -0.079 4.079 8 C -0.089 4.089 9 C 0.525 3.475 10 O -0.587 6.587 11 N -0.625 5.625 12 C 0.123 3.877 13 C -0.113 4.113 14 H 0.054 0.946 15 C -0.079 4.079 16 C -0.139 4.139 17 C 0.180 3.820 18 H 0.045 0.955 19 N -0.729 5.729 20 C -0.232 4.232 21 H 0.076 0.924 22 C -0.078 4.078 23 N -0.971 5.971 24 Si 0.968 3.032 25 H -0.287 1.287 26 H -0.301 1.301 27 H -0.270 1.270 28 C -0.118 4.118 29 H 0.103 0.897 30 C 0.133 3.867 31 C -0.118 4.118 32 H 0.083 0.917 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.140 0.860 36 H 0.134 0.866 37 H 0.048 0.952 38 H 0.076 0.924 39 H 0.082 0.918 40 H 0.130 0.870 41 H 0.123 0.877 42 H 0.106 0.894 43 H 0.093 0.907 44 H 0.096 0.904 45 H 0.076 0.924 46 H 0.072 0.928 47 H 0.044 0.956 48 H 0.372 0.628 49 H 0.248 0.752 50 H 0.043 0.957 51 H 0.054 0.946 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.265 4.281 -19.866 26.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C -0.105 4.105 3 C -0.145 4.145 4 C -0.148 4.148 5 C -0.094 4.094 6 C -0.172 4.172 7 C -0.080 4.080 8 C -0.128 4.128 9 C 0.315 3.685 10 O -0.467 6.467 11 N -0.359 5.359 12 C 0.003 3.997 13 C -0.133 4.133 14 H 0.073 0.927 15 C -0.117 4.117 16 C -0.180 4.180 17 C 0.071 3.929 18 H 0.063 0.937 19 N -0.370 5.370 20 C -0.364 4.364 21 H 0.094 0.906 22 C -0.270 4.270 23 N -0.622 5.622 24 Si 0.798 3.202 25 H -0.214 1.214 26 H -0.228 1.228 27 H -0.195 1.195 28 C -0.138 4.138 29 H 0.121 0.879 30 C 0.010 3.990 31 C -0.136 4.136 32 H 0.102 0.898 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.157 0.843 36 H 0.152 0.848 37 H 0.067 0.933 38 H 0.095 0.905 39 H 0.101 0.899 40 H 0.148 0.852 41 H 0.141 0.859 42 H 0.124 0.876 43 H 0.111 0.889 44 H 0.114 0.886 45 H 0.095 0.905 46 H 0.091 0.909 47 H 0.063 0.937 48 H 0.205 0.795 49 H 0.057 0.943 50 H 0.062 0.938 51 H 0.072 0.928 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges -17.462 4.616 -19.255 26.400 hybrid contribution 1.309 0.296 1.528 2.033 sum -16.153 4.912 -17.727 24.481 Atomic orbital electron populations 1.20797 0.89419 1.03234 1.03153 1.20214 0.97495 0.92950 0.99867 1.21290 0.94135 0.98379 1.00679 1.21247 0.94815 0.97739 1.00991 1.19955 0.96529 0.93215 0.99733 1.20843 0.91015 1.03837 1.01529 1.19366 0.93916 0.93722 1.00989 1.20708 1.03237 0.96536 0.92319 1.20863 0.76624 0.78854 0.92141 1.90709 1.55903 1.51687 1.48369 1.49977 1.55124 1.22392 1.08423 1.21512 0.99044 0.89241 0.89913 1.22165 0.98349 0.97114 0.95637 0.92703 1.21651 1.02738 0.91133 0.96180 1.23657 1.00390 0.98878 0.95053 1.20428 0.87240 0.91965 0.93305 0.93715 1.42570 1.33697 1.26152 1.34555 1.19618 1.07745 1.04016 1.05043 0.90575 1.25502 1.00643 0.98048 1.02819 1.69818 1.29020 1.18673 1.44702 0.85206 0.78649 0.76819 0.79518 1.21401 1.22765 1.19519 1.22392 1.00281 0.93095 0.98004 0.87888 1.21217 0.98370 0.94469 0.84903 1.21095 0.93257 0.98560 1.00676 0.89848 0.91439 0.90880 0.84264 0.84781 0.93340 0.90549 0.89890 0.85185 0.85890 0.87574 0.88860 0.88590 0.90539 0.90920 0.93692 0.79534 0.94301 0.93831 0.92779 0.85104 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.01 71.24 0.71 -0.81 16 2 C -0.11 -2.13 5.88 -19.86 -0.12 -2.25 16 3 C -0.13 -2.55 9.70 22.27 0.22 -2.33 16 4 C -0.13 -2.85 9.70 22.27 0.22 -2.64 16 5 C -0.09 -2.28 5.88 -19.87 -0.12 -2.39 16 6 C -0.12 -2.53 9.60 71.23 0.68 -1.85 16 7 C -0.08 -1.88 4.37 -19.86 -0.09 -1.97 16 8 C -0.09 -1.78 4.56 29.10 0.13 -1.65 16 9 C 0.52 15.67 7.87 87.66 0.69 16.36 16 10 O -0.59 -23.63 16.36 -3.03 -0.05 -23.68 16 11 N -0.62 -17.65 3.42 -814.56 -2.79 -20.44 16 12 C 0.12 2.41 6.41 85.00 0.54 2.95 16 13 C -0.11 -2.87 2.75 -10.57 -0.03 -2.90 16 14 H 0.05 1.80 7.68 -2.39 -0.02 1.78 16 15 C -0.08 -1.71 6.70 31.12 0.21 -1.50 16 16 C -0.14 -4.24 6.73 32.79 0.22 -4.02 16 17 C 0.18 6.67 3.42 45.15 0.15 6.82 16 18 H 0.04 1.71 8.11 -2.38 -0.02 1.69 16 19 N -0.73 -35.78 4.85 -322.19 -1.56 -37.34 16 20 C -0.23 -12.74 9.97 84.03 0.84 -11.90 16 21 H 0.08 4.01 7.83 -2.91 -0.02 3.98 16 22 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 23 N -0.97 -60.15 13.06 21.65 0.28 -59.87 16 24 Si 0.97 46.69 29.55 68.60 2.03 48.72 16 25 H -0.29 -13.52 7.11 99.48 0.71 -12.82 16 26 H -0.30 -14.81 7.11 99.48 0.71 -14.10 16 27 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 28 C -0.12 -3.59 2.62 -10.51 -0.03 -3.62 16 29 H 0.10 2.64 8.14 -2.39 -0.02 2.62 16 30 C 0.13 4.74 6.53 85.17 0.56 5.30 16 31 C -0.12 -2.59 9.34 22.27 0.21 -2.39 16 32 H 0.08 0.90 8.14 -2.39 -0.02 0.88 16 33 H 0.07 0.90 8.08 -2.39 -0.02 0.89 16 34 H 0.07 0.89 8.09 -2.39 -0.02 0.87 16 35 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 36 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 37 H 0.05 1.31 8.14 -2.39 -0.02 1.29 16 38 H 0.08 1.44 6.03 -2.38 -0.01 1.42 16 39 H 0.08 1.45 8.09 -2.38 -0.02 1.43 16 40 H 0.13 1.75 8.05 -2.39 -0.02 1.73 16 41 H 0.12 1.95 6.16 -2.39 -0.01 1.93 16 42 H 0.11 1.37 8.14 -2.38 -0.02 1.35 16 43 H 0.09 1.46 8.14 -2.39 -0.02 1.44 16 44 H 0.10 1.50 8.14 -2.38 -0.02 1.48 16 45 H 0.08 1.49 8.14 -2.38 -0.02 1.47 16 46 H 0.07 1.92 8.14 -2.39 -0.02 1.90 16 47 H 0.04 1.65 7.98 -2.39 -0.02 1.64 16 48 H 0.37 19.90 6.16 -92.71 -0.57 19.33 16 49 H 0.25 15.04 8.31 -92.71 -0.77 14.27 16 50 H 0.04 1.89 6.89 -2.38 -0.02 1.88 16 51 H 0.05 2.11 8.09 -2.39 -0.02 2.09 16 52 H 0.13 2.39 8.06 -2.91 -0.02 2.37 16 Total: -1.00 -75.54 410.98 3.71 -71.82 By element: Atomic # 1 Polarization: 35.29 SS G_CDS: 0.33 Total: 35.62 kcal Atomic # 6 Polarization: -20.30 SS G_CDS: 5.47 Total: -14.82 kcal Atomic # 7 Polarization: -113.58 SS G_CDS: -4.07 Total: -117.65 kcal Atomic # 8 Polarization: -23.63 SS G_CDS: -0.05 Total: -23.68 kcal Atomic # 14 Polarization: 46.69 SS G_CDS: 2.03 Total: 48.72 kcal Total: -75.54 3.71 -71.82 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026346376.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.772 kcal (2) G-P(sol) polarization free energy of solvation -75.536 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.764 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.714 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.822 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.050 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds