Wall clock time and date at job start Wed Apr 1 2020 02:03:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00235 * 2 1 4 4 C 1.38212 * 120.00305 * 180.02562 * 3 2 1 5 5 C 1.38252 * 119.99874 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99908 * 179.97438 * 5 4 3 7 7 C 1.38215 * 120.00294 * 359.95673 * 5 4 3 8 8 C 1.50702 * 120.00248 * 179.72478 * 7 5 4 9 9 C 1.50691 * 109.47228 * 84.99662 * 8 7 5 10 10 O 1.21281 * 120.00482 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99965 * 179.97438 * 9 8 7 12 12 C 1.49220 * 126.06017 * 0.02689 * 11 9 8 13 13 C 1.50347 * 104.86097 * 172.93123 * 12 11 9 14 14 H 1.08989 * 110.04954 * 279.53824 * 13 12 11 15 15 C 1.50995 * 125.56605 * 144.33126 * 13 12 11 16 16 C 1.56398 * 101.59587 * 203.98088 * 15 13 12 17 17 C 1.55940 * 105.78652 * 25.01564 * 16 15 13 18 18 H 1.09002 * 110.49225 * 248.73767 * 17 16 15 19 19 N 1.46503 * 110.49280 * 126.21542 * 17 16 15 20 20 C 1.36931 * 120.00517 * 86.44647 * 19 17 16 21 21 H 1.08009 * 119.99772 * 0.02562 * 20 19 17 22 22 C 1.38814 * 120.00366 * 180.02562 * 20 19 17 23 23 N 1.31616 * 119.99652 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99982 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47327 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46733 * 120.00325 * 24 22 20 27 27 H 1.48496 * 109.46849 * 239.99849 * 24 22 20 28 28 C 1.50284 * 104.15960 * 7.54447 * 17 16 15 29 29 H 1.08995 * 109.99901 * 80.48895 * 28 17 16 30 30 C 1.49701 * 126.06056 * 179.71773 * 11 9 8 31 31 C 1.38218 * 120.00066 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47359 * 90.00115 * 1 2 3 33 33 H 1.09009 * 109.47217 * 210.00028 * 1 2 3 34 34 H 1.09000 * 109.46819 * 329.99514 * 1 2 3 35 35 H 1.08000 * 119.99718 * 0.02562 * 3 2 1 36 36 H 1.08001 * 119.99798 * 179.97438 * 4 3 2 37 37 H 1.09002 * 109.46961 * 269.97666 * 6 5 4 38 38 H 1.08993 * 109.47341 * 29.98195 * 6 5 4 39 39 H 1.09001 * 109.46864 * 149.98279 * 6 5 4 40 40 H 1.09004 * 109.46812 * 204.99986 * 8 7 5 41 41 H 1.08996 * 109.46746 * 324.99729 * 8 7 5 42 42 H 1.08998 * 110.35996 * 291.77931 * 12 11 9 43 43 H 1.08997 * 110.35875 * 53.97695 * 12 11 9 44 44 H 1.09003 * 111.00556 * 322.06070 * 15 13 12 45 45 H 1.08997 * 111.00163 * 85.86154 * 15 13 12 46 46 H 1.08999 * 110.18797 * 144.09820 * 16 15 13 47 47 H 1.09003 * 110.18219 * 265.93809 * 16 15 13 48 48 H 0.97004 * 119.99627 * 266.45654 * 19 17 16 49 49 H 0.97006 * 119.99629 * 179.97438 * 23 22 20 50 50 H 1.08995 * 110.84624 * 273.05702 * 30 11 9 51 51 H 1.09004 * 110.84279 * 36.67302 * 30 11 9 52 52 H 1.08001 * 119.99699 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 6 3.5807 -1.1970 -0.0012 8 6 4.3342 -2.5021 -0.0087 9 6 4.7000 -2.8790 1.4037 10 8 4.3800 -2.1591 2.3258 11 7 5.3819 -4.0167 1.6425 12 6 5.8411 -4.9974 0.6158 13 6 6.6935 -5.9776 1.3729 14 1 7.6911 -5.5658 1.5248 15 6 6.7814 -7.4599 1.0990 16 6 7.2482 -8.0089 2.4871 17 6 6.7716 -6.9616 3.5396 18 1 7.6255 -6.4433 3.9759 19 7 5.9779 -7.6107 4.5860 20 6 6.6000 -8.1652 5.6726 21 1 7.6759 -8.1236 5.7584 22 6 5.8480 -8.7807 6.6638 23 7 4.5370 -8.8318 6.5590 24 14 6.6967 -9.5364 8.1464 25 1 8.1645 -9.3463 8.0268 26 1 6.2117 -8.8754 9.3846 27 1 6.3883 -10.9877 8.2068 28 6 5.9208 -6.0074 2.7495 29 1 4.9247 -6.4263 2.6073 30 6 5.8187 -4.5173 2.9840 31 6 2.1981 -1.1970 0.0005 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.6583 2.1326 0.0004 36 1 4.1204 2.1327 -0.0010 37 1 6.1412 0.0001 -1.0307 38 1 6.1425 0.8899 0.5109 39 1 6.1424 -0.8901 0.5107 40 1 3.7069 -3.2813 -0.4419 41 1 5.2417 -2.3942 -0.6026 42 1 4.9870 -5.5048 0.1673 43 1 6.4291 -4.4951 -0.1523 44 1 5.8070 -7.8652 0.8261 45 1 7.5203 -7.6712 0.3261 46 1 6.7864 -8.9765 2.6834 47 1 8.3343 -8.0981 2.5103 48 1 5.0117 -7.6479 4.5091 49 1 4.0115 -9.2622 7.2515 50 1 6.7867 -4.0980 3.2582 51 1 5.0692 -4.2951 3.7437 52 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026346377.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:09 Heat of formation + Delta-G solvation = 4.760256 kcal Electronic energy + Delta-G solvation = -29706.685841 eV Core-core repulsion = 25863.927444 eV Total energy + Delta-G solvation = -3842.758397 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.67096 -39.85549 -38.34867 -35.30562 -34.34968 -33.39542 -32.53294 -30.92711 -29.90578 -29.45668 -28.50583 -27.59826 -25.42327 -24.93216 -23.38937 -22.93401 -22.18081 -20.52664 -20.23073 -19.18594 -18.91013 -17.18161 -16.75274 -16.52858 -16.18638 -15.91696 -15.17446 -14.92320 -14.72265 -14.61305 -14.09445 -13.96175 -13.77050 -13.71884 -13.41496 -13.21519 -12.91998 -12.89578 -12.86265 -12.70404 -12.34442 -12.12273 -12.06402 -11.82600 -11.63041 -11.58732 -11.41523 -11.09731 -11.06335 -11.05848 -10.81327 -10.77511 -10.47295 -10.16539 -10.10855 -9.86670 -9.73197 -9.56746 -8.93198 -8.86839 -8.60464 -8.49394 -6.97939 -5.78259 -3.07405 1.19888 1.28487 2.70186 2.90788 3.42528 3.48286 3.50509 3.60512 4.12556 4.45871 4.56716 4.58807 4.67643 4.73336 4.82565 4.86325 5.01806 5.05296 5.12026 5.22798 5.25126 5.29709 5.36791 5.38049 5.40877 5.43723 5.44409 5.54803 5.55946 5.59020 5.60257 5.72521 5.76562 5.84342 5.91877 5.97066 5.99302 6.03715 6.07937 6.12430 6.20935 6.31201 6.32911 6.34375 6.46146 6.49681 6.52668 6.62586 6.77160 6.91001 7.04889 7.56408 7.69949 8.23004 8.39941 9.51352 10.08130 10.42438 11.44251 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015622 B = 0.002255 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.906155 B =12413.322969 C =13232.031043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.093 4.093 3 C -0.119 4.119 4 C -0.117 4.117 5 C -0.074 4.074 6 C -0.115 4.115 7 C -0.060 4.060 8 C -0.099 4.099 9 C 0.529 3.471 10 O -0.532 6.532 11 N -0.627 5.627 12 C 0.121 3.879 13 C -0.130 4.130 14 H 0.081 0.919 15 C -0.097 4.097 16 C -0.144 4.144 17 C 0.196 3.804 18 H 0.054 0.946 19 N -0.720 5.720 20 C -0.239 4.239 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.905 3.095 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.117 4.117 29 H 0.081 0.919 30 C 0.129 3.871 31 C -0.103 4.103 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.120 0.880 37 H 0.069 0.931 38 H 0.066 0.934 39 H 0.064 0.936 40 H 0.100 0.900 41 H 0.101 0.899 42 H 0.069 0.931 43 H 0.069 0.931 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.054 0.946 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.069 0.931 51 H 0.082 0.918 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.742 15.997 -20.849 26.290 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.093 4.093 3 C -0.137 4.137 4 C -0.135 4.135 5 C -0.074 4.074 6 C -0.172 4.172 7 C -0.061 4.061 8 C -0.139 4.139 9 C 0.317 3.683 10 O -0.408 6.408 11 N -0.363 5.363 12 C -0.001 4.001 13 C -0.149 4.149 14 H 0.100 0.900 15 C -0.135 4.135 16 C -0.184 4.184 17 C 0.084 3.916 18 H 0.072 0.928 19 N -0.361 5.361 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.137 4.137 29 H 0.100 0.900 30 C 0.008 3.992 31 C -0.121 4.121 32 H 0.086 0.914 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.137 0.863 36 H 0.138 0.862 37 H 0.087 0.913 38 H 0.085 0.915 39 H 0.083 0.917 40 H 0.118 0.882 41 H 0.119 0.881 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.100 0.900 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -0.859 16.419 -20.198 26.044 hybrid contribution 0.102 -0.580 0.836 1.023 sum -0.757 15.838 -19.362 25.027 Atomic orbital electron populations 1.20772 0.91269 1.02841 1.02070 1.19833 0.95985 0.93072 1.00403 1.20967 0.94140 0.97372 1.01175 1.20937 0.94152 0.97256 1.01169 1.19663 0.95849 0.92575 0.99359 1.20808 0.91481 1.03089 1.01815 1.19122 0.93334 0.93143 1.00493 1.20669 1.01803 0.96238 0.95143 1.20093 0.77543 0.79722 0.90961 1.90746 1.53598 1.50469 1.45962 1.49916 1.55749 1.21778 1.08876 1.21265 0.98025 0.90201 0.90594 1.22170 0.99385 0.95977 0.97365 0.90045 1.21734 1.01216 0.92352 0.98179 1.23805 1.00005 1.01358 0.93281 1.20094 0.93132 0.90117 0.88207 0.92826 1.42505 1.05816 1.66965 1.20796 1.19278 0.91651 1.28714 0.97421 0.91091 1.24752 0.95456 1.01684 0.99018 1.69671 1.03859 1.49246 1.35206 0.86140 0.78470 0.78690 0.83026 1.20546 1.21878 1.21903 1.22541 1.00828 0.94181 0.96121 0.90018 1.21563 1.00319 0.93208 0.84106 1.20852 0.93242 0.97681 1.00313 0.91353 0.91521 0.91645 0.86295 0.86190 0.91251 0.91465 0.91665 0.88204 0.88090 0.91243 0.91229 0.91609 0.92177 0.90710 0.92703 0.78173 0.93541 0.91232 0.89968 0.86237 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 2 C -0.09 -0.99 5.88 -104.62 -0.62 -1.60 16 3 C -0.12 -1.20 9.70 -39.58 -0.38 -1.59 16 4 C -0.12 -1.23 9.70 -39.59 -0.38 -1.61 16 5 C -0.07 -0.84 5.88 -104.62 -0.62 -1.46 16 6 C -0.12 -1.09 9.21 36.01 0.33 -0.76 16 7 C -0.06 -0.71 4.37 -104.62 -0.46 -1.17 16 8 C -0.10 -1.03 4.38 -29.04 -0.13 -1.15 16 9 C 0.53 7.54 7.08 -10.99 -0.08 7.46 16 10 O -0.53 -9.89 16.36 5.56 0.09 -9.80 16 11 N -0.63 -8.43 3.42 -171.40 -0.59 -9.01 16 12 C 0.12 1.25 6.41 -3.86 -0.02 1.23 16 13 C -0.13 -1.54 2.76 -90.27 -0.25 -1.79 16 14 H 0.08 0.95 8.14 -51.94 -0.42 0.53 16 15 C -0.10 -1.18 6.72 -25.91 -0.17 -1.36 16 16 C -0.14 -2.31 6.74 -23.33 -0.16 -2.47 16 17 C 0.20 3.64 3.39 -67.71 -0.23 3.41 16 18 H 0.05 1.03 8.11 -51.93 -0.42 0.61 16 19 N -0.72 -17.45 5.12 -53.21 -0.27 -17.73 16 20 C -0.24 -6.50 9.97 -15.06 -0.15 -6.65 16 21 H 0.07 1.87 7.83 -52.48 -0.41 1.46 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -27.98 13.06 55.49 0.72 -27.26 16 24 Si 0.91 22.27 29.55 -169.99 -5.02 17.24 16 25 H -0.28 -6.65 7.11 56.52 0.40 -6.25 16 26 H -0.29 -7.26 7.11 56.52 0.40 -6.86 16 27 H -0.29 -7.22 7.11 56.52 0.40 -6.81 16 28 C -0.12 -1.83 2.42 -90.20 -0.22 -2.05 16 29 H 0.08 1.40 7.92 -51.93 -0.41 0.99 16 30 C 0.13 2.01 6.82 -3.17 -0.02 1.99 16 31 C -0.10 -1.18 9.34 -39.58 -0.37 -1.55 16 32 H 0.07 0.46 8.14 -51.93 -0.42 0.04 16 33 H 0.07 0.53 8.09 -51.92 -0.42 0.11 16 34 H 0.06 0.47 8.09 -51.93 -0.42 0.05 16 35 H 0.12 0.94 8.06 -52.49 -0.42 0.52 16 36 H 0.12 1.00 8.06 -52.49 -0.42 0.57 16 37 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 38 H 0.07 0.59 8.08 -51.93 -0.42 0.17 16 39 H 0.06 0.69 6.16 -51.93 -0.32 0.37 16 40 H 0.10 0.85 8.05 -51.93 -0.42 0.44 16 41 H 0.10 0.83 7.00 -51.93 -0.36 0.46 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.23 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.62 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.39 7.98 -51.93 -0.41 0.97 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.38 10.02 7.64 -40.82 -0.31 9.71 16 49 H 0.25 7.42 8.31 -40.82 -0.34 7.08 16 50 H 0.07 1.05 8.14 -51.93 -0.42 0.63 16 51 H 0.08 1.49 8.09 -51.93 -0.42 1.07 16 52 H 0.12 1.23 8.06 -52.49 -0.42 0.80 16 LS Contribution 413.93 15.07 6.24 6.24 Total: -1.00 -32.88 413.93 -11.45 -44.33 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -8.96 Total: 8.09 kcal Atomic # 6 Polarization: -8.45 SS G_CDS: -3.66 Total: -12.11 kcal Atomic # 7 Polarization: -53.86 SS G_CDS: -0.13 Total: -53.99 kcal Atomic # 8 Polarization: -9.89 SS G_CDS: 0.09 Total: -9.80 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.02 Total: 17.24 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -32.88 -11.45 -44.33 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026346377.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 49.086 kcal (2) G-P(sol) polarization free energy of solvation -32.877 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 16.209 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.449 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.326 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.760 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds