Wall clock time and date at job start Wed Apr 1 2020 02:03:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38254 * 120.00235 * 2 1 4 4 C 1.38212 * 120.00305 * 180.02562 * 3 2 1 5 5 C 1.38252 * 119.99874 * 0.02562 * 4 3 2 6 6 C 1.50701 * 119.99908 * 179.97438 * 5 4 3 7 7 C 1.38215 * 120.00294 * 359.95673 * 5 4 3 8 8 C 1.50702 * 120.00248 * 179.72478 * 7 5 4 9 9 C 1.50691 * 109.47228 * 84.99662 * 8 7 5 10 10 O 1.21281 * 120.00482 * 0.02562 * 9 8 7 11 11 N 1.34774 * 119.99965 * 179.97438 * 9 8 7 12 12 C 1.49220 * 126.06017 * 0.02689 * 11 9 8 13 13 C 1.50347 * 104.86097 * 172.93123 * 12 11 9 14 14 H 1.08989 * 110.04954 * 279.53824 * 13 12 11 15 15 C 1.50995 * 125.56605 * 144.33126 * 13 12 11 16 16 C 1.56398 * 101.59587 * 203.98088 * 15 13 12 17 17 C 1.55940 * 105.78652 * 25.01564 * 16 15 13 18 18 H 1.09002 * 110.49225 * 248.73767 * 17 16 15 19 19 N 1.46503 * 110.49280 * 126.21542 * 17 16 15 20 20 C 1.36931 * 120.00517 * 86.44647 * 19 17 16 21 21 H 1.08009 * 119.99772 * 0.02562 * 20 19 17 22 22 C 1.38814 * 120.00366 * 180.02562 * 20 19 17 23 23 N 1.31616 * 119.99652 * 0.02562 * 22 20 19 24 24 Si 1.86805 * 119.99982 * 180.02562 * 22 20 19 25 25 H 1.48492 * 109.47327 * 0.02562 * 24 22 20 26 26 H 1.48500 * 109.46733 * 120.00325 * 24 22 20 27 27 H 1.48496 * 109.46849 * 239.99849 * 24 22 20 28 28 C 1.50284 * 104.15960 * 7.54447 * 17 16 15 29 29 H 1.08995 * 109.99901 * 80.48895 * 28 17 16 30 30 C 1.49701 * 126.06056 * 179.71773 * 11 9 8 31 31 C 1.38218 * 120.00066 * 179.97438 * 2 1 3 32 32 H 1.08996 * 109.47359 * 90.00115 * 1 2 3 33 33 H 1.09009 * 109.47217 * 210.00028 * 1 2 3 34 34 H 1.09000 * 109.46819 * 329.99514 * 1 2 3 35 35 H 1.08000 * 119.99718 * 0.02562 * 3 2 1 36 36 H 1.08001 * 119.99798 * 179.97438 * 4 3 2 37 37 H 1.09002 * 109.46961 * 269.97666 * 6 5 4 38 38 H 1.08993 * 109.47341 * 29.98195 * 6 5 4 39 39 H 1.09001 * 109.46864 * 149.98279 * 6 5 4 40 40 H 1.09004 * 109.46812 * 204.99986 * 8 7 5 41 41 H 1.08996 * 109.46746 * 324.99729 * 8 7 5 42 42 H 1.08998 * 110.35996 * 291.77931 * 12 11 9 43 43 H 1.08997 * 110.35875 * 53.97695 * 12 11 9 44 44 H 1.09003 * 111.00556 * 322.06070 * 15 13 12 45 45 H 1.08997 * 111.00163 * 85.86154 * 15 13 12 46 46 H 1.08999 * 110.18797 * 144.09820 * 16 15 13 47 47 H 1.09003 * 110.18219 * 265.93809 * 16 15 13 48 48 H 0.97004 * 119.99627 * 266.45654 * 19 17 16 49 49 H 0.97006 * 119.99629 * 179.97438 * 23 22 20 50 50 H 1.08995 * 110.84624 * 273.05702 * 30 11 9 51 51 H 1.09004 * 110.84279 * 36.67302 * 30 11 9 52 52 H 1.08001 * 119.99699 * 0.02562 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1983 1.1973 0.0000 4 6 3.5805 1.1973 -0.0005 5 6 4.2717 0.0000 -0.0016 6 6 5.7787 0.0000 -0.0028 7 6 3.5807 -1.1970 -0.0012 8 6 4.3342 -2.5021 -0.0087 9 6 4.7000 -2.8790 1.4037 10 8 4.3800 -2.1591 2.3258 11 7 5.3819 -4.0167 1.6425 12 6 5.8411 -4.9974 0.6158 13 6 6.6935 -5.9776 1.3729 14 1 7.6911 -5.5658 1.5248 15 6 6.7814 -7.4599 1.0990 16 6 7.2482 -8.0089 2.4871 17 6 6.7716 -6.9616 3.5396 18 1 7.6255 -6.4433 3.9759 19 7 5.9779 -7.6107 4.5860 20 6 6.6000 -8.1652 5.6726 21 1 7.6759 -8.1236 5.7584 22 6 5.8480 -8.7807 6.6638 23 7 4.5370 -8.8318 6.5590 24 14 6.6967 -9.5364 8.1464 25 1 8.1645 -9.3463 8.0268 26 1 6.2117 -8.8754 9.3846 27 1 6.3883 -10.9877 8.2068 28 6 5.9208 -6.0074 2.7495 29 1 4.9247 -6.4263 2.6073 30 6 5.8187 -4.5173 2.9840 31 6 2.1981 -1.1970 0.0005 32 1 -0.3634 0.0000 -1.0276 33 1 -0.3634 -0.8900 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.6583 2.1326 0.0004 36 1 4.1204 2.1327 -0.0010 37 1 6.1412 0.0001 -1.0307 38 1 6.1425 0.8899 0.5109 39 1 6.1424 -0.8901 0.5107 40 1 3.7069 -3.2813 -0.4419 41 1 5.2417 -2.3942 -0.6026 42 1 4.9870 -5.5048 0.1673 43 1 6.4291 -4.4951 -0.1523 44 1 5.8070 -7.8652 0.8261 45 1 7.5203 -7.6712 0.3261 46 1 6.7864 -8.9765 2.6834 47 1 8.3343 -8.0981 2.5103 48 1 5.0117 -7.6479 4.5091 49 1 4.0115 -9.2622 7.2515 50 1 6.7867 -4.0980 3.2582 51 1 5.0692 -4.2951 3.7437 52 1 1.6581 -2.1323 0.0005 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026346377.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:07 Heat of formation + Delta-G solvation = -13.284991 kcal Electronic energy + Delta-G solvation = -29707.468342 eV Core-core repulsion = 25863.927444 eV Total energy + Delta-G solvation = -3843.540898 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.76621 -40.76393 -39.45317 -36.77056 -35.12560 -35.06282 -33.35025 -32.67591 -31.07584 -30.13794 -29.83594 -28.51858 -26.94566 -25.64972 -24.90051 -24.34516 -23.02407 -21.42505 -21.36450 -20.48131 -19.94908 -19.11191 -17.87840 -17.67686 -17.08663 -16.75280 -16.49882 -16.17386 -15.86232 -15.62478 -15.48554 -15.35748 -14.98129 -14.66072 -14.43396 -14.09303 -14.01005 -13.97190 -13.67548 -13.61646 -13.46210 -13.19429 -13.12108 -13.01650 -12.88171 -12.74901 -12.61896 -12.44781 -12.35355 -12.18801 -12.09358 -11.83445 -11.81766 -11.77865 -11.58837 -11.36119 -11.04368 -10.97073 -10.82430 -9.71344 -9.67972 -9.25820 -8.99254 -7.94615 -5.22566 0.40478 0.49289 1.45805 1.46801 1.56436 1.63137 1.86393 2.55685 2.80197 3.00203 3.39949 3.62529 3.70093 3.74992 3.87231 3.99738 4.03144 4.06321 4.13171 4.24128 4.29396 4.31184 4.35232 4.45755 4.50656 4.54676 4.59098 4.60871 4.69329 4.71003 4.73379 4.77673 4.79750 4.82629 4.84807 4.89789 4.95808 4.98963 5.09202 5.11492 5.20084 5.23808 5.24970 5.37568 5.38547 5.48497 5.53631 5.54495 5.65123 5.69890 5.73700 6.15977 6.28009 6.52087 7.14850 7.33387 8.10627 8.32262 9.29258 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015622 B = 0.002255 C = 0.002116 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1791.906155 B =12413.322969 C =13232.031043 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.107 4.107 3 C -0.127 4.127 4 C -0.128 4.128 5 C -0.092 4.092 6 C -0.112 4.112 7 C -0.080 4.080 8 C -0.088 4.088 9 C 0.525 3.475 10 O -0.586 6.586 11 N -0.625 5.625 12 C 0.121 3.879 13 C -0.105 4.105 14 H 0.092 0.908 15 C -0.083 4.083 16 C -0.138 4.138 17 C 0.185 3.815 18 H 0.047 0.953 19 N -0.735 5.735 20 C -0.233 4.233 21 H 0.077 0.923 22 C -0.080 4.080 23 N -0.972 5.972 24 Si 0.969 3.031 25 H -0.264 1.264 26 H -0.298 1.298 27 H -0.294 1.294 28 C -0.121 4.121 29 H 0.063 0.937 30 C 0.130 3.870 31 C -0.123 4.123 32 H 0.083 0.917 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.139 0.861 36 H 0.138 0.862 37 H 0.093 0.907 38 H 0.069 0.931 39 H 0.052 0.948 40 H 0.122 0.878 41 H 0.130 0.870 42 H 0.086 0.914 43 H 0.111 0.889 44 H 0.066 0.934 45 H 0.095 0.905 46 H 0.045 0.955 47 H 0.067 0.933 48 H 0.370 0.630 49 H 0.249 0.751 50 H 0.074 0.926 51 H 0.043 0.957 52 H 0.124 0.876 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.920 16.664 -23.904 29.154 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.107 4.107 3 C -0.145 4.145 4 C -0.146 4.146 5 C -0.092 4.092 6 C -0.169 4.169 7 C -0.080 4.080 8 C -0.127 4.127 9 C 0.315 3.685 10 O -0.466 6.466 11 N -0.360 5.360 12 C 0.001 3.999 13 C -0.124 4.124 14 H 0.111 0.889 15 C -0.121 4.121 16 C -0.178 4.178 17 C 0.076 3.924 18 H 0.065 0.935 19 N -0.375 5.375 20 C -0.365 4.365 21 H 0.095 0.905 22 C -0.272 4.272 23 N -0.623 5.623 24 Si 0.799 3.201 25 H -0.188 1.188 26 H -0.225 1.225 27 H -0.221 1.221 28 C -0.141 4.141 29 H 0.081 0.919 30 C 0.008 3.992 31 C -0.141 4.141 32 H 0.101 0.899 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.157 0.843 36 H 0.156 0.844 37 H 0.111 0.889 38 H 0.088 0.912 39 H 0.071 0.929 40 H 0.140 0.860 41 H 0.148 0.852 42 H 0.104 0.896 43 H 0.129 0.871 44 H 0.085 0.915 45 H 0.114 0.886 46 H 0.064 0.936 47 H 0.086 0.914 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.092 0.908 51 H 0.061 0.939 52 H 0.142 0.858 Dipole moment (debyes) X Y Z Total from point charges 0.864 17.081 -23.323 28.921 hybrid contribution -0.389 -0.716 1.774 1.952 sum 0.475 16.365 -21.549 27.063 Atomic orbital electron populations 1.20800 0.89756 1.03106 1.03090 1.20191 0.97344 0.93088 1.00067 1.21291 0.94401 0.98143 1.00680 1.21262 0.94591 0.97928 1.00844 1.19999 0.96966 0.92819 0.99416 1.20814 0.90320 1.02584 1.03133 1.19372 0.93660 0.93978 1.01021 1.20690 1.03290 0.96240 0.92454 1.20839 0.76484 0.79032 0.92102 1.90720 1.55682 1.52231 1.47932 1.49956 1.55414 1.22115 1.08504 1.21530 0.98909 0.89366 0.90130 1.22158 0.99575 0.96402 0.94307 0.88933 1.21648 1.02239 0.91870 0.96310 1.23599 1.00511 0.98915 0.94824 1.20395 0.92849 0.91243 0.87906 0.93474 1.42728 1.05554 1.67427 1.21765 1.19664 0.91975 1.27038 0.97811 0.90498 1.25548 0.96107 1.03397 1.02111 1.69830 1.05301 1.51101 1.36081 0.85119 0.78257 0.77365 0.79347 1.18815 1.22530 1.22095 1.22297 0.99982 0.93266 0.98537 0.91861 1.21357 0.99315 0.93505 0.84984 1.21098 0.93672 0.98354 1.01005 0.89884 0.91843 0.90784 0.84311 0.84410 0.88895 0.91243 0.92866 0.86040 0.85208 0.89593 0.87116 0.91478 0.88630 0.93632 0.91384 0.79820 0.94221 0.90803 0.93855 0.85845 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.68 10.01 71.24 0.71 -0.96 16 2 C -0.11 -2.20 5.88 -19.86 -0.12 -2.32 16 3 C -0.13 -2.46 9.70 22.27 0.22 -2.24 16 4 C -0.13 -2.55 9.70 22.27 0.22 -2.33 16 5 C -0.09 -1.98 5.88 -19.87 -0.12 -2.09 16 6 C -0.11 -1.91 9.21 71.24 0.66 -1.25 16 7 C -0.08 -1.80 4.37 -19.86 -0.09 -1.88 16 8 C -0.09 -1.62 4.38 29.10 0.13 -1.49 16 9 C 0.53 14.57 7.08 87.65 0.62 15.19 16 10 O -0.59 -22.41 16.36 -3.03 -0.05 -22.46 16 11 N -0.63 -15.93 3.42 -814.58 -2.79 -18.72 16 12 C 0.12 2.02 6.41 84.99 0.54 2.56 16 13 C -0.11 -2.15 2.76 -10.57 -0.03 -2.18 16 14 H 0.09 1.77 8.14 -2.39 -0.02 1.75 16 15 C -0.08 -1.73 6.72 31.12 0.21 -1.52 16 16 C -0.14 -4.25 6.74 32.80 0.22 -4.03 16 17 C 0.19 6.93 3.39 45.13 0.15 7.08 16 18 H 0.05 1.81 8.11 -2.39 -0.02 1.79 16 19 N -0.74 -36.87 5.12 -322.26 -1.65 -38.52 16 20 C -0.23 -12.89 9.97 84.03 0.84 -12.05 16 21 H 0.08 4.08 7.83 -2.91 -0.02 4.05 16 22 C -0.08 -4.63 5.50 84.86 0.47 -4.16 16 23 N -0.97 -60.56 13.06 21.65 0.28 -60.28 16 24 Si 0.97 46.72 29.55 68.60 2.03 48.74 16 25 H -0.26 -11.83 7.11 99.48 0.71 -11.13 16 26 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 27 H -0.29 -14.11 7.11 99.48 0.71 -13.41 16 28 C -0.12 -3.77 2.42 -10.52 -0.03 -3.79 16 29 H 0.06 2.22 7.92 -2.39 -0.02 2.20 16 30 C 0.13 4.16 6.82 85.16 0.58 4.74 16 31 C -0.12 -2.78 9.34 22.27 0.21 -2.57 16 32 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 33 H 0.06 0.98 8.09 -2.38 -0.02 0.96 16 34 H 0.07 0.97 8.09 -2.39 -0.02 0.95 16 35 H 0.14 1.98 8.06 -2.91 -0.02 1.96 16 36 H 0.14 2.08 8.06 -2.91 -0.02 2.06 16 37 H 0.09 1.10 8.14 -2.39 -0.02 1.08 16 38 H 0.07 1.12 8.08 -2.39 -0.02 1.10 16 39 H 0.05 1.03 6.16 -2.39 -0.01 1.01 16 40 H 0.12 1.71 8.05 -2.38 -0.02 1.69 16 41 H 0.13 1.62 7.00 -2.39 -0.02 1.60 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.11 1.08 8.14 -2.39 -0.02 1.06 16 44 H 0.07 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.10 1.45 8.14 -2.39 -0.02 1.43 16 46 H 0.04 1.68 7.98 -2.39 -0.02 1.66 16 47 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 48 H 0.37 20.33 7.64 -92.70 -0.71 19.62 16 49 H 0.25 15.08 8.31 -92.70 -0.77 14.31 16 50 H 0.07 2.25 8.14 -2.39 -0.02 2.23 16 51 H 0.04 1.69 8.09 -2.38 -0.02 1.67 16 52 H 0.12 2.51 8.06 -2.91 -0.02 2.49 16 Total: -1.00 -76.13 413.93 3.41 -72.73 By element: Atomic # 1 Polarization: 33.64 SS G_CDS: 0.19 Total: 33.83 kcal Atomic # 6 Polarization: -20.72 SS G_CDS: 5.40 Total: -15.32 kcal Atomic # 7 Polarization: -113.36 SS G_CDS: -4.16 Total: -117.52 kcal Atomic # 8 Polarization: -22.41 SS G_CDS: -0.05 Total: -22.46 kcal Atomic # 14 Polarization: 46.72 SS G_CDS: 2.03 Total: 48.74 kcal Total: -76.13 3.41 -72.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026346377.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 59.443 kcal (2) G-P(sol) polarization free energy of solvation -76.134 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.691 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.406 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.728 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.285 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds