Wall clock time and date at job start Wed Apr 1 2020 02:03:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 119.99808 * 2 1 4 4 C 1.38234 * 119.99814 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00196 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.00061 * 0.07178 * 4 3 2 7 7 C 1.38234 * 119.99667 * 359.88520 * 6 4 3 8 8 C 1.50702 * 119.99485 * 180.10960 * 7 6 4 9 9 C 1.50696 * 109.47138 * 269.97614 * 8 7 6 10 10 O 1.21273 * 120.00217 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99646 * 180.02562 * 9 8 7 12 12 C 1.49213 * 126.06177 * 0.02635 * 11 9 8 13 13 C 1.50339 * 104.86122 * 172.93355 * 12 11 9 14 14 H 1.09008 * 110.05248 * 279.53805 * 13 12 11 15 15 C 1.51000 * 125.57150 * 144.33187 * 13 12 11 16 16 C 1.56400 * 101.59674 * 203.97831 * 15 13 12 17 17 C 1.55943 * 105.79139 * 25.01537 * 16 15 13 18 18 H 1.08996 * 110.49718 * 248.74127 * 17 16 15 19 19 N 1.46499 * 110.49387 * 126.20576 * 17 16 15 20 20 C 1.36942 * 119.99557 * 86.45707 * 19 17 16 21 21 H 1.07999 * 120.00161 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99598 * 179.97438 * 20 19 17 23 23 N 1.31618 * 120.00633 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99720 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47357 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47255 * 120.00287 * 24 22 20 27 27 H 1.48500 * 109.47042 * 239.99940 * 24 22 20 28 28 C 1.50301 * 104.15459 * 7.54053 * 17 16 15 29 29 H 1.09002 * 109.99481 * 80.49158 * 28 17 16 30 30 C 1.49699 * 126.05563 * 179.71515 * 11 9 8 31 31 C 1.38230 * 119.99865 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.46961 * 89.99933 * 1 2 3 33 33 H 1.08993 * 109.47341 * 210.00461 * 1 2 3 34 34 H 1.09001 * 109.46864 * 330.00546 * 1 2 3 35 35 H 1.08000 * 120.00616 * 359.70324 * 3 2 1 36 36 H 1.09001 * 109.47063 * 90.00208 * 5 4 3 37 37 H 1.08998 * 109.47268 * 210.00355 * 5 4 3 38 38 H 1.08998 * 109.47151 * 330.00502 * 5 4 3 39 39 H 1.07997 * 119.99835 * 179.97438 * 6 4 3 40 40 H 1.09003 * 109.47421 * 29.98021 * 8 7 6 41 41 H 1.09009 * 109.46652 * 149.97665 * 8 7 6 42 42 H 1.09001 * 110.36254 * 291.77952 * 12 11 9 43 43 H 1.08996 * 110.35942 * 54.08307 * 12 11 9 44 44 H 1.08997 * 110.99864 * 322.05420 * 15 13 12 45 45 H 1.08997 * 111.00286 * 85.86134 * 15 13 12 46 46 H 1.09002 * 110.18750 * 144.09527 * 16 15 13 47 47 H 1.08997 * 110.18636 * 265.85768 * 16 15 13 48 48 H 0.96995 * 120.00045 * 266.45144 * 19 17 16 49 49 H 0.96997 * 120.00294 * 179.97438 * 23 22 20 50 50 H 1.08994 * 110.84941 * 273.05664 * 30 11 9 51 51 H 1.09002 * 110.84446 * 36.67622 * 30 11 9 52 52 H 1.08001 * 120.00350 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3341 2.5023 0.0000 6 6 4.2717 0.0000 -0.0004 7 6 3.5805 -1.1971 0.0005 8 6 4.3340 -2.5022 0.0019 9 6 4.5851 -2.9388 -1.4184 10 8 4.1915 -2.2572 -2.3409 11 7 5.2473 -4.0869 -1.6633 12 6 5.7883 -5.0250 -0.6368 13 6 6.2689 -6.2161 -1.4181 14 1 5.4283 -6.8642 -1.6664 15 6 7.4853 -7.0487 -1.0908 16 6 7.8331 -7.6601 -2.4877 17 6 7.2452 -6.6723 -3.5415 18 1 6.4057 -7.1288 -4.0658 19 7 8.2805 -6.2615 -4.4931 20 6 8.5327 -7.0244 -5.6020 21 1 7.9681 -7.9286 -5.7752 22 6 9.5133 -6.6349 -6.5039 23 7 10.2011 -5.5326 -6.2931 24 14 9.8569 -7.6751 -8.0170 25 1 8.9550 -8.8548 -8.0219 26 1 9.6199 -6.8651 -9.2388 27 1 11.2694 -8.1327 -7.9928 28 6 6.7836 -5.4970 -2.7262 29 1 7.6304 -4.8535 -2.4875 30 6 5.5646 -4.6502 -3.0135 31 6 2.1981 -1.1971 0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8901 0.5138 35 1 1.6582 2.1325 -0.0048 36 1 4.5154 2.8176 1.0275 37 1 5.2866 2.3716 -0.5135 38 1 3.7452 3.2616 -0.5145 39 1 5.3517 0.0000 -0.0004 40 1 5.2865 -2.3713 0.5156 41 1 3.7449 -3.2613 0.5167 42 1 6.6176 -4.5634 -0.1007 43 1 5.0029 -5.3196 0.0591 44 1 8.2995 -6.4235 -0.7243 45 1 7.2416 -7.8304 -0.3713 46 1 8.9139 -7.7369 -2.6062 47 1 7.3729 -8.6425 -2.5935 48 1 8.7872 -5.4492 -4.3377 49 1 10.8865 -5.2607 -6.9232 50 1 4.7416 -5.2629 -3.3814 51 1 5.8031 -3.8547 -3.7194 52 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026349149.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:13 Heat of formation + Delta-G solvation = 2.691071 kcal Electronic energy + Delta-G solvation = -29356.371783 eV Core-core repulsion = 25513.523659 eV Total energy + Delta-G solvation = -3842.848124 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.11 seconds Orbital eigenvalues (eV) -40.61257 -39.79535 -38.40187 -35.30300 -33.67520 -33.65264 -33.38085 -30.92703 -30.07631 -28.52440 -28.13521 -27.07210 -26.85028 -25.39987 -23.37269 -22.89418 -21.11757 -20.89604 -20.22724 -19.19058 -18.94383 -17.18010 -16.73140 -16.56247 -16.33426 -16.05023 -15.13178 -14.88008 -14.69613 -14.40294 -14.14060 -13.94845 -13.77369 -13.75404 -13.40994 -13.11164 -13.10307 -12.90363 -12.76792 -12.74215 -12.53153 -12.21222 -11.97794 -11.78035 -11.60867 -11.58273 -11.41644 -11.15410 -11.12538 -11.05676 -10.81299 -10.77460 -10.46969 -10.16358 -10.10734 -9.85980 -9.72861 -9.56436 -8.92726 -8.71712 -8.65278 -8.59835 -6.97826 -5.78161 -3.07370 1.20983 1.26945 2.70863 2.90842 3.42586 3.48343 3.50567 3.60631 4.12958 4.44836 4.56376 4.57855 4.62286 4.67161 4.84014 4.97463 5.05494 5.08400 5.13327 5.16164 5.25210 5.30473 5.35629 5.37463 5.39079 5.40883 5.43958 5.45032 5.55520 5.56958 5.63939 5.67620 5.72832 5.84677 5.92083 5.98499 5.99666 6.03977 6.05010 6.12753 6.21174 6.33063 6.34552 6.40472 6.41051 6.49869 6.50764 6.62773 6.77379 6.90726 7.05060 7.56827 7.70090 8.23149 8.40037 9.51438 10.08222 10.42529 11.44336 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.002137 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.194573 B =13098.150327 C =13875.529608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.123 4.123 4 C -0.083 4.083 5 C -0.114 4.114 6 C -0.110 4.110 7 C -0.056 4.056 8 C -0.098 4.098 9 C 0.529 3.471 10 O -0.533 6.533 11 N -0.627 5.627 12 C 0.121 3.879 13 C -0.130 4.130 14 H 0.081 0.919 15 C -0.096 4.096 16 C -0.144 4.144 17 C 0.196 3.804 18 H 0.054 0.946 19 N -0.720 5.720 20 C -0.239 4.239 21 H 0.071 0.929 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.280 1.280 26 H -0.292 1.292 27 H -0.292 1.292 28 C -0.117 4.117 29 H 0.082 0.918 30 C 0.129 3.871 31 C -0.111 4.111 32 H 0.070 0.930 33 H 0.065 0.935 34 H 0.064 0.936 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.067 0.933 38 H 0.065 0.935 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.100 0.900 42 H 0.070 0.930 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.060 0.940 46 H 0.074 0.926 47 H 0.054 0.946 48 H 0.384 0.616 49 H 0.255 0.745 50 H 0.069 0.931 51 H 0.082 0.918 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.441 8.492 20.126 26.750 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.141 4.141 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.128 4.128 7 C -0.056 4.056 8 C -0.137 4.137 9 C 0.317 3.683 10 O -0.409 6.409 11 N -0.363 5.363 12 C -0.001 4.001 13 C -0.149 4.149 14 H 0.099 0.901 15 C -0.135 4.135 16 C -0.185 4.185 17 C 0.085 3.915 18 H 0.072 0.928 19 N -0.361 5.361 20 C -0.371 4.371 21 H 0.089 0.911 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.205 1.205 26 H -0.219 1.219 27 H -0.219 1.219 28 C -0.137 4.137 29 H 0.100 0.900 30 C 0.008 3.992 31 C -0.129 4.129 32 H 0.088 0.912 33 H 0.084 0.916 34 H 0.083 0.917 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.086 0.914 38 H 0.084 0.916 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.118 0.882 42 H 0.088 0.912 43 H 0.088 0.912 44 H 0.084 0.916 45 H 0.078 0.922 46 H 0.093 0.907 47 H 0.073 0.927 48 H 0.218 0.782 49 H 0.065 0.935 50 H 0.088 0.912 51 H 0.100 0.900 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.701 8.838 19.473 26.529 hybrid contribution 0.542 -0.421 -0.824 1.072 sum -15.159 8.417 18.648 25.464 Atomic orbital electron populations 1.20774 0.91275 1.02515 1.02383 1.19821 0.95920 0.93036 0.99612 1.20856 0.93495 0.97399 1.02346 1.19840 0.93810 0.95184 0.99430 1.20784 1.00073 0.94047 1.02131 1.20836 0.99550 0.91442 1.00936 1.19246 0.93498 0.93549 0.99340 1.20656 1.02083 0.95997 0.94994 1.20114 0.77568 0.79572 0.91085 1.90742 1.50741 1.53149 1.46299 1.49911 1.56319 1.21748 1.08326 1.21264 0.98232 0.89961 0.90611 1.22176 0.99228 0.95959 0.97561 0.90052 1.21734 0.95485 0.98120 0.98134 1.23806 1.02476 0.98961 0.93215 1.20095 0.91649 0.90689 0.89112 0.92824 1.42504 1.41072 1.28707 1.23794 1.19280 1.15077 1.03990 0.98714 0.91082 1.24752 0.99158 0.97781 0.99230 1.69667 1.26354 1.24173 1.37795 0.86139 0.77635 0.79382 0.83160 1.20546 1.21875 1.21914 1.22546 0.97052 0.97468 0.96624 0.90011 1.21561 0.96535 0.97341 0.83763 1.20796 0.93311 0.97533 1.01240 0.91160 0.91630 0.91687 0.86341 0.91277 0.91434 0.91614 0.86299 0.88080 0.88173 0.91216 0.91211 0.91606 0.92176 0.90715 0.92703 0.78172 0.93539 0.91235 0.89966 0.86421 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.86 10.01 36.01 0.36 -0.50 16 2 C -0.08 -0.88 5.88 -104.63 -0.62 -1.49 16 3 C -0.12 -1.26 9.36 -39.58 -0.37 -1.64 16 4 C -0.08 -0.89 5.88 -104.62 -0.62 -1.50 16 5 C -0.11 -0.93 10.01 36.01 0.36 -0.57 16 6 C -0.11 -1.27 9.36 -39.58 -0.37 -1.64 16 7 C -0.06 -0.66 4.37 -104.62 -0.46 -1.11 16 8 C -0.10 -1.00 5.06 -29.04 -0.15 -1.15 16 9 C 0.53 7.61 7.87 -10.99 -0.09 7.52 16 10 O -0.53 -10.02 16.36 5.56 0.09 -9.93 16 11 N -0.63 -8.50 3.42 -171.41 -0.59 -9.09 16 12 C 0.12 1.26 6.41 -3.86 -0.02 1.24 16 13 C -0.13 -1.56 2.76 -90.27 -0.25 -1.81 16 14 H 0.08 0.96 8.14 -51.92 -0.42 0.54 16 15 C -0.10 -1.19 6.72 -25.91 -0.17 -1.36 16 16 C -0.14 -2.32 6.74 -23.33 -0.16 -2.48 16 17 C 0.20 3.66 3.39 -67.70 -0.23 3.43 16 18 H 0.05 1.03 8.11 -51.93 -0.42 0.61 16 19 N -0.72 -17.48 5.12 -53.21 -0.27 -17.75 16 20 C -0.24 -6.50 9.97 -15.06 -0.15 -6.65 16 21 H 0.07 1.88 7.83 -52.49 -0.41 1.47 16 22 C -0.01 -0.37 5.50 -17.43 -0.10 -0.47 16 23 N -0.93 -28.00 13.06 55.49 0.72 -27.28 16 24 Si 0.91 22.29 29.55 -169.99 -5.02 17.27 16 25 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 27 H -0.29 -7.23 7.11 56.52 0.40 -6.82 16 28 C -0.12 -1.84 2.42 -90.20 -0.22 -2.06 16 29 H 0.08 1.41 7.92 -51.93 -0.41 0.99 16 30 C 0.13 2.03 6.82 -3.17 -0.02 2.01 16 31 C -0.11 -1.24 9.36 -39.59 -0.37 -1.62 16 32 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 33 H 0.06 0.44 8.08 -51.93 -0.42 0.02 16 34 H 0.06 0.41 8.09 -51.93 -0.42 -0.01 16 35 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 36 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 37 H 0.07 0.55 8.08 -51.93 -0.42 0.13 16 38 H 0.06 0.48 8.09 -51.93 -0.42 0.06 16 39 H 0.12 1.26 8.06 -52.49 -0.42 0.83 16 40 H 0.10 0.85 8.09 -51.93 -0.42 0.43 16 41 H 0.10 0.79 8.09 -51.92 -0.42 0.37 16 42 H 0.07 0.66 8.14 -51.93 -0.42 0.24 16 43 H 0.07 0.56 8.14 -51.93 -0.42 0.14 16 44 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 46 H 0.07 1.39 7.98 -51.93 -0.41 0.97 16 47 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 48 H 0.38 10.04 7.64 -40.82 -0.31 9.72 16 49 H 0.25 7.43 8.31 -40.82 -0.34 7.09 16 50 H 0.07 1.06 8.14 -51.93 -0.42 0.64 16 51 H 0.08 1.49 8.09 -51.93 -0.42 1.07 16 52 H 0.12 1.16 8.06 -52.49 -0.42 0.73 16 LS Contribution 418.58 15.07 6.31 6.31 Total: -1.00 -33.01 418.58 -11.51 -44.52 By element: Atomic # 1 Polarization: 16.92 SS G_CDS: -9.12 Total: 7.80 kcal Atomic # 6 Polarization: -8.22 SS G_CDS: -3.63 Total: -11.85 kcal Atomic # 7 Polarization: -53.98 SS G_CDS: -0.13 Total: -54.12 kcal Atomic # 8 Polarization: -10.02 SS G_CDS: 0.09 Total: -9.93 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.02 Total: 17.27 kcal Total LS contribution 6.31 Total: 6.31 kcal Total: -33.01 -11.51 -44.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026349149.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.213 kcal (2) G-P(sol) polarization free energy of solvation -33.013 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.509 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.522 kcal (6) G-S(sol) free energy of system = (1) + (5) 2.691 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.11 seconds