Wall clock time and date at job start Wed Apr 1 2020 02:03:11 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38235 * 119.99808 * 2 1 4 4 C 1.38234 * 119.99814 * 179.97438 * 3 2 1 5 5 C 1.50706 * 120.00196 * 179.97438 * 4 3 2 6 6 C 1.38240 * 120.00061 * 0.07178 * 4 3 2 7 7 C 1.38234 * 119.99667 * 359.88520 * 6 4 3 8 8 C 1.50702 * 119.99485 * 180.10960 * 7 6 4 9 9 C 1.50696 * 109.47138 * 269.97614 * 8 7 6 10 10 O 1.21273 * 120.00217 * 0.02562 * 9 8 7 11 11 N 1.34780 * 119.99646 * 180.02562 * 9 8 7 12 12 C 1.49213 * 126.06177 * 0.02635 * 11 9 8 13 13 C 1.50339 * 104.86122 * 172.93355 * 12 11 9 14 14 H 1.09008 * 110.05248 * 279.53805 * 13 12 11 15 15 C 1.51000 * 125.57150 * 144.33187 * 13 12 11 16 16 C 1.56400 * 101.59674 * 203.97831 * 15 13 12 17 17 C 1.55943 * 105.79139 * 25.01537 * 16 15 13 18 18 H 1.08996 * 110.49718 * 248.74127 * 17 16 15 19 19 N 1.46499 * 110.49387 * 126.20576 * 17 16 15 20 20 C 1.36942 * 119.99557 * 86.45707 * 19 17 16 21 21 H 1.07999 * 120.00161 * 0.02562 * 20 19 17 22 22 C 1.38811 * 119.99598 * 179.97438 * 20 19 17 23 23 N 1.31618 * 120.00633 * 0.02562 * 22 20 19 24 24 Si 1.86803 * 119.99720 * 180.02562 * 22 20 19 25 25 H 1.48496 * 109.47357 * 359.97438 * 24 22 20 26 26 H 1.48496 * 109.47255 * 120.00287 * 24 22 20 27 27 H 1.48500 * 109.47042 * 239.99940 * 24 22 20 28 28 C 1.50301 * 104.15459 * 7.54053 * 17 16 15 29 29 H 1.09002 * 109.99481 * 80.49158 * 28 17 16 30 30 C 1.49699 * 126.05563 * 179.71515 * 11 9 8 31 31 C 1.38230 * 119.99865 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.46961 * 89.99933 * 1 2 3 33 33 H 1.08993 * 109.47341 * 210.00461 * 1 2 3 34 34 H 1.09001 * 109.46864 * 330.00546 * 1 2 3 35 35 H 1.08000 * 120.00616 * 359.70324 * 3 2 1 36 36 H 1.09001 * 109.47063 * 90.00208 * 5 4 3 37 37 H 1.08998 * 109.47268 * 210.00355 * 5 4 3 38 38 H 1.08998 * 109.47151 * 330.00502 * 5 4 3 39 39 H 1.07997 * 119.99835 * 179.97438 * 6 4 3 40 40 H 1.09003 * 109.47421 * 29.98021 * 8 7 6 41 41 H 1.09009 * 109.46652 * 149.97665 * 8 7 6 42 42 H 1.09001 * 110.36254 * 291.77952 * 12 11 9 43 43 H 1.08996 * 110.35942 * 54.08307 * 12 11 9 44 44 H 1.08997 * 110.99864 * 322.05420 * 15 13 12 45 45 H 1.08997 * 111.00286 * 85.86134 * 15 13 12 46 46 H 1.09002 * 110.18750 * 144.09527 * 16 15 13 47 47 H 1.08997 * 110.18636 * 265.85768 * 16 15 13 48 48 H 0.96995 * 120.00045 * 266.45144 * 19 17 16 49 49 H 0.96997 * 120.00294 * 179.97438 * 23 22 20 50 50 H 1.08994 * 110.84941 * 273.05664 * 30 11 9 51 51 H 1.09002 * 110.84446 * 36.67622 * 30 11 9 52 52 H 1.08001 * 120.00350 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1981 1.1972 0.0000 4 6 3.5805 1.1972 0.0005 5 6 4.3341 2.5023 0.0000 6 6 4.2717 0.0000 -0.0004 7 6 3.5805 -1.1971 0.0005 8 6 4.3340 -2.5022 0.0019 9 6 4.5851 -2.9388 -1.4184 10 8 4.1915 -2.2572 -2.3409 11 7 5.2473 -4.0869 -1.6633 12 6 5.7883 -5.0250 -0.6368 13 6 6.2689 -6.2161 -1.4181 14 1 5.4283 -6.8642 -1.6664 15 6 7.4853 -7.0487 -1.0908 16 6 7.8331 -7.6601 -2.4877 17 6 7.2452 -6.6723 -3.5415 18 1 6.4057 -7.1288 -4.0658 19 7 8.2805 -6.2615 -4.4931 20 6 8.5327 -7.0244 -5.6020 21 1 7.9681 -7.9286 -5.7752 22 6 9.5133 -6.6349 -6.5039 23 7 10.2011 -5.5326 -6.2931 24 14 9.8569 -7.6751 -8.0170 25 1 8.9550 -8.8548 -8.0219 26 1 9.6199 -6.8651 -9.2388 27 1 11.2694 -8.1327 -7.9928 28 6 6.7836 -5.4970 -2.7262 29 1 7.6304 -4.8535 -2.4875 30 6 5.5646 -4.6502 -3.0135 31 6 2.1981 -1.1971 0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3633 -0.8899 0.5139 34 1 -0.3633 0.8901 0.5138 35 1 1.6582 2.1325 -0.0048 36 1 4.5154 2.8176 1.0275 37 1 5.2866 2.3716 -0.5135 38 1 3.7452 3.2616 -0.5145 39 1 5.3517 0.0000 -0.0004 40 1 5.2865 -2.3713 0.5156 41 1 3.7449 -3.2613 0.5167 42 1 6.6176 -4.5634 -0.1007 43 1 5.0029 -5.3196 0.0591 44 1 8.2995 -6.4235 -0.7243 45 1 7.2416 -7.8304 -0.3713 46 1 8.9139 -7.7369 -2.6062 47 1 7.3729 -8.6425 -2.5935 48 1 8.7872 -5.4492 -4.3377 49 1 10.8865 -5.2607 -6.9232 50 1 4.7416 -5.2629 -3.3814 51 1 5.8031 -3.8547 -3.7194 52 1 1.6582 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026349149.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:11 Heat of formation + Delta-G solvation = -15.318752 kcal Electronic energy + Delta-G solvation = -29357.152748 eV Core-core repulsion = 25513.523659 eV Total energy + Delta-G solvation = -3843.629088 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -41.73395 -40.67867 -39.52035 -36.77608 -35.07678 -34.46723 -34.37654 -32.67903 -31.22869 -29.85915 -28.96949 -27.86045 -27.56448 -26.92877 -24.90315 -24.33450 -21.98679 -21.63108 -21.42356 -20.48357 -20.01092 -19.11521 -17.86822 -17.67788 -17.20249 -16.94396 -16.53408 -16.17985 -15.83768 -15.60489 -15.39410 -15.14181 -14.97303 -14.77156 -14.42504 -14.03840 -14.00422 -13.86427 -13.85177 -13.58904 -13.34582 -13.27573 -13.15130 -13.09189 -13.00108 -12.62258 -12.55613 -12.44227 -12.36660 -12.18489 -12.09581 -11.89900 -11.85700 -11.79064 -11.59053 -11.36348 -11.04119 -10.97308 -10.82475 -9.71738 -9.51772 -9.42400 -8.99463 -7.94786 -5.22834 0.40283 0.47906 1.45724 1.46606 1.56317 1.62941 1.86026 2.55497 2.79488 3.00034 3.39687 3.62336 3.69972 3.75017 3.85644 3.94291 4.00024 4.05909 4.22741 4.24435 4.29146 4.35925 4.42520 4.46335 4.52270 4.55283 4.57335 4.62133 4.65120 4.69973 4.71117 4.74465 4.77936 4.79665 4.83652 4.95301 4.98263 4.99955 5.06019 5.09079 5.20513 5.24472 5.27893 5.36110 5.38281 5.48308 5.54078 5.61649 5.64580 5.64869 5.72581 6.15337 6.27821 6.51820 7.14096 7.33180 8.10405 8.32035 9.29051 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015620 B = 0.002137 C = 0.002017 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1792.194573 B =13098.150327 C =13875.529608 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.134 4.134 4 C -0.095 4.095 5 C -0.112 4.112 6 C -0.132 4.132 7 C -0.072 4.072 8 C -0.086 4.086 9 C 0.523 3.477 10 O -0.588 6.588 11 N -0.625 5.625 12 C 0.121 3.879 13 C -0.106 4.106 14 H 0.092 0.908 15 C -0.082 4.082 16 C -0.138 4.138 17 C 0.185 3.815 18 H 0.047 0.953 19 N -0.735 5.735 20 C -0.233 4.233 21 H 0.077 0.923 22 C -0.080 4.080 23 N -0.972 5.972 24 Si 0.970 3.030 25 H -0.264 1.264 26 H -0.298 1.298 27 H -0.294 1.294 28 C -0.121 4.121 29 H 0.063 0.937 30 C 0.130 3.870 31 C -0.128 4.128 32 H 0.069 0.931 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.137 0.863 36 H 0.084 0.916 37 H 0.062 0.938 38 H 0.074 0.926 39 H 0.121 0.879 40 H 0.124 0.876 41 H 0.132 0.868 42 H 0.087 0.913 43 H 0.111 0.889 44 H 0.067 0.933 45 H 0.095 0.905 46 H 0.045 0.955 47 H 0.067 0.933 48 H 0.370 0.630 49 H 0.249 0.751 50 H 0.073 0.927 51 H 0.043 0.957 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.136 7.276 22.995 29.586 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.095 4.095 5 C -0.169 4.169 6 C -0.151 4.151 7 C -0.073 4.073 8 C -0.125 4.125 9 C 0.314 3.686 10 O -0.469 6.469 11 N -0.360 5.360 12 C 0.001 3.999 13 C -0.125 4.125 14 H 0.110 0.890 15 C -0.121 4.121 16 C -0.179 4.179 17 C 0.076 3.924 18 H 0.065 0.935 19 N -0.375 5.375 20 C -0.365 4.365 21 H 0.095 0.905 22 C -0.272 4.272 23 N -0.623 5.623 24 Si 0.799 3.201 25 H -0.188 1.188 26 H -0.225 1.225 27 H -0.221 1.221 28 C -0.141 4.141 29 H 0.082 0.918 30 C 0.008 3.992 31 C -0.146 4.146 32 H 0.087 0.913 33 H 0.094 0.906 34 H 0.098 0.902 35 H 0.155 0.845 36 H 0.102 0.898 37 H 0.082 0.918 38 H 0.093 0.907 39 H 0.139 0.861 40 H 0.142 0.858 41 H 0.150 0.850 42 H 0.105 0.895 43 H 0.129 0.871 44 H 0.086 0.914 45 H 0.114 0.886 46 H 0.064 0.936 47 H 0.086 0.914 48 H 0.202 0.798 49 H 0.058 0.942 50 H 0.091 0.909 51 H 0.062 0.938 52 H 0.146 0.854 Dipole moment (debyes) X Y Z Total from point charges -17.427 7.564 22.407 29.377 hybrid contribution 0.998 -0.037 -1.710 1.981 sum -16.429 7.527 20.697 27.476 Atomic orbital electron populations 1.20813 0.89452 1.03822 1.02661 1.20218 0.97458 0.92938 0.98808 1.21169 0.93587 0.98316 1.02163 1.20199 0.94433 0.95941 0.98964 1.20815 0.99695 0.93184 1.03165 1.21059 0.99909 0.92144 1.01941 1.19500 0.94019 0.94181 0.99561 1.20687 1.03628 0.96104 0.92084 1.20914 0.76470 0.78891 0.92338 1.90716 1.53062 1.54774 1.48321 1.49957 1.55903 1.22149 1.07959 1.21532 1.00107 0.88307 0.89943 1.22168 0.99260 0.96174 0.94886 0.88989 1.21648 0.95473 0.98856 0.96074 1.23600 1.00416 0.99001 0.94850 1.20395 0.90169 0.92707 0.89121 0.93499 1.42725 1.42218 1.28058 1.24461 1.19666 1.13969 1.03793 0.99081 0.90493 1.25552 0.99885 0.99288 1.02465 1.69826 1.27411 1.26184 1.38888 0.85115 0.77375 0.78202 0.79365 1.18818 1.22511 1.22107 1.22304 0.96393 0.96762 0.98653 0.91814 1.21357 0.96760 0.96234 0.84858 1.21065 0.93469 0.98401 1.01644 0.91259 0.90569 0.90214 0.84529 0.89769 0.91848 0.90725 0.86143 0.85826 0.84964 0.89499 0.87069 0.91446 0.88634 0.93619 0.91396 0.79813 0.94214 0.90851 0.93844 0.85356 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.52 10.01 71.24 0.71 -0.81 16 2 C -0.09 -1.87 5.88 -19.87 -0.12 -1.99 16 3 C -0.13 -2.65 9.36 22.27 0.21 -2.44 16 4 C -0.10 -2.00 5.88 -19.86 -0.12 -2.12 16 5 C -0.11 -1.75 10.01 71.24 0.71 -1.03 16 6 C -0.13 -3.05 9.36 22.27 0.21 -2.84 16 7 C -0.07 -1.62 4.37 -19.87 -0.09 -1.71 16 8 C -0.09 -1.56 5.06 29.10 0.15 -1.41 16 9 C 0.52 14.61 7.87 87.66 0.69 15.30 16 10 O -0.59 -22.76 16.36 -3.01 -0.05 -22.81 16 11 N -0.63 -16.02 3.42 -814.62 -2.79 -18.81 16 12 C 0.12 2.03 6.41 84.99 0.54 2.57 16 13 C -0.11 -2.18 2.76 -10.57 -0.03 -2.21 16 14 H 0.09 1.78 8.14 -2.38 -0.02 1.76 16 15 C -0.08 -1.73 6.72 31.13 0.21 -1.52 16 16 C -0.14 -4.27 6.74 32.80 0.22 -4.05 16 17 C 0.19 6.95 3.39 45.14 0.15 7.11 16 18 H 0.05 1.81 8.11 -2.39 -0.02 1.79 16 19 N -0.74 -36.92 5.12 -322.25 -1.65 -38.57 16 20 C -0.23 -12.92 9.97 84.03 0.84 -12.08 16 21 H 0.08 4.08 7.83 -2.91 -0.02 4.06 16 22 C -0.08 -4.65 5.50 84.86 0.47 -4.18 16 23 N -0.97 -60.61 13.06 21.65 0.28 -60.32 16 24 Si 0.97 46.77 29.55 68.60 2.03 48.80 16 25 H -0.26 -11.85 7.11 99.48 0.71 -11.14 16 26 H -0.30 -14.52 7.11 99.48 0.71 -13.81 16 27 H -0.29 -14.13 7.11 99.48 0.71 -13.42 16 28 C -0.12 -3.79 2.42 -10.52 -0.03 -3.82 16 29 H 0.06 2.24 7.92 -2.39 -0.02 2.22 16 30 C 0.13 4.17 6.82 85.16 0.58 4.75 16 31 C -0.13 -2.74 9.36 22.27 0.21 -2.53 16 32 H 0.07 0.97 8.14 -2.39 -0.02 0.95 16 33 H 0.08 0.87 8.08 -2.39 -0.02 0.85 16 34 H 0.08 0.84 8.09 -2.39 -0.02 0.82 16 35 H 0.14 2.05 8.06 -2.91 -0.02 2.02 16 36 H 0.08 1.04 8.14 -2.39 -0.02 1.02 16 37 H 0.06 1.02 8.08 -2.39 -0.02 1.00 16 38 H 0.07 1.01 8.09 -2.39 -0.02 0.99 16 39 H 0.12 2.56 8.06 -2.91 -0.02 2.54 16 40 H 0.12 1.68 8.09 -2.39 -0.02 1.66 16 41 H 0.13 1.53 8.09 -2.38 -0.02 1.51 16 42 H 0.09 1.24 8.14 -2.39 -0.02 1.22 16 43 H 0.11 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.07 1.45 8.14 -2.39 -0.02 1.43 16 45 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 46 H 0.04 1.69 7.98 -2.39 -0.02 1.67 16 47 H 0.07 1.91 8.14 -2.39 -0.02 1.89 16 48 H 0.37 20.35 7.64 -92.71 -0.71 19.65 16 49 H 0.25 15.09 8.31 -92.71 -0.77 14.32 16 50 H 0.07 2.26 8.14 -2.39 -0.02 2.24 16 51 H 0.04 1.70 8.09 -2.39 -0.02 1.68 16 52 H 0.13 2.32 8.06 -2.91 -0.02 2.30 16 Total: -1.00 -76.54 418.58 3.53 -73.01 By element: Atomic # 1 Polarization: 33.53 SS G_CDS: 0.18 Total: 33.71 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 5.53 Total: -15.01 kcal Atomic # 7 Polarization: -113.55 SS G_CDS: -4.16 Total: -117.70 kcal Atomic # 8 Polarization: -22.76 SS G_CDS: -0.05 Total: -22.81 kcal Atomic # 14 Polarization: 46.77 SS G_CDS: 2.03 Total: 48.80 kcal Total: -76.54 3.53 -73.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026349149.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 57.691 kcal (2) G-P(sol) polarization free energy of solvation -76.540 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -18.849 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.530 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.009 kcal (6) G-S(sol) free energy of system = (1) + (5) -15.319 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds