Wall clock time and date at job start Wed Apr 1 2020 02:03:17 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38243 * 120.00066 * 2 1 4 4 C 1.38233 * 119.99834 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.00015 * 179.97438 * 4 3 2 6 6 C 1.38239 * 120.00310 * 359.95694 * 4 3 2 7 7 C 1.38241 * 119.99655 * 0.02562 * 6 4 3 8 8 C 1.50697 * 119.99678 * 179.97438 * 7 6 4 9 9 C 1.50706 * 109.47337 * 89.99729 * 8 7 6 10 10 O 1.21280 * 119.99607 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99784 * 179.97438 * 9 8 7 12 12 C 1.46898 * 125.62439 * 359.97438 * 11 9 8 13 13 C 1.54211 * 107.63809 * 178.51417 * 12 11 9 14 14 H 1.09001 * 113.72078 * 214.27733 * 13 12 11 15 15 C 1.54846 * 108.04532 * 87.00862 * 13 12 11 16 16 C 1.54140 * 104.62674 * 214.54320 * 15 13 12 17 17 C 1.53865 * 106.49582 * 24.50165 * 16 15 13 18 18 H 1.08996 * 109.92219 * 238.75695 * 17 16 15 19 19 N 1.46499 * 109.92328 * 117.64356 * 17 16 15 20 20 C 1.36932 * 119.99549 * 86.45460 * 19 17 16 21 21 H 1.08003 * 120.00354 * 0.02562 * 20 19 17 22 22 C 1.38817 * 120.00011 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00154 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99635 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 269.99668 * 24 22 20 26 26 H 1.48503 * 109.47261 * 149.99848 * 24 22 20 27 27 H 1.48500 * 109.47454 * 29.99841 * 24 22 20 28 28 C 1.53718 * 107.03075 * 358.29969 * 17 16 15 29 29 H 1.08998 * 112.96656 * 214.88154 * 28 17 16 30 30 C 1.47343 * 125.61322 * 180.02562 * 11 9 8 31 31 C 1.38230 * 119.99945 * 0.24985 * 7 6 4 32 32 H 1.08999 * 109.46633 * 90.00182 * 1 2 3 33 33 H 1.08997 * 109.47536 * 210.00154 * 1 2 3 34 34 H 1.08997 * 109.46906 * 330.00416 * 1 2 3 35 35 H 1.07991 * 119.99916 * 359.97438 * 3 2 1 36 36 H 1.08992 * 109.47212 * 269.98121 * 5 4 3 37 37 H 1.09000 * 109.46526 * 29.98522 * 5 4 3 38 38 H 1.09005 * 109.46927 * 149.97678 * 5 4 3 39 39 H 1.07997 * 120.00104 * 179.97438 * 6 4 3 40 40 H 1.08998 * 109.47374 * 329.99642 * 8 7 6 41 41 H 1.08998 * 109.47097 * 209.99955 * 8 7 6 42 42 H 1.09004 * 109.82496 * 58.98005 * 12 11 9 43 43 H 1.09008 * 109.88753 * 298.07963 * 12 11 9 44 44 H 1.08999 * 110.40405 * 95.76028 * 15 13 12 45 45 H 1.08998 * 110.40557 * 333.32863 * 15 13 12 46 46 H 1.08995 * 110.04877 * 265.24298 * 16 15 13 47 47 H 1.08996 * 110.04687 * 143.75719 * 16 15 13 48 48 H 0.96993 * 120.00302 * 266.45424 * 19 17 16 49 49 H 0.96998 * 119.99442 * 179.97438 * 23 22 20 50 50 H 1.09004 * 110.29852 * 322.80581 * 30 11 9 51 51 H 1.08997 * 110.30009 * 84.94528 * 30 11 9 52 52 H 1.08001 * 119.99804 * 179.72131 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3341 2.5023 -0.0011 6 6 4.2718 0.0000 -0.0002 7 6 3.5805 -1.1972 0.0002 8 6 4.3340 -2.5023 0.0000 9 6 4.5858 -2.9372 1.4208 10 8 4.1917 -2.2548 2.3427 11 7 5.2480 -4.0850 1.6668 12 6 5.7763 -5.0030 0.6490 13 6 6.4868 -6.1573 1.3845 14 1 7.3608 -6.5406 0.8580 15 6 5.4300 -7.2414 1.7098 16 6 5.8757 -7.8251 3.0650 17 6 6.7112 -6.7342 3.7571 18 1 7.7130 -7.1098 3.9654 19 7 6.0622 -6.3248 5.0050 20 6 6.3070 -7.0146 6.1623 21 1 6.9788 -7.8603 6.1551 22 6 5.6925 -6.6264 7.3449 23 7 5.9281 -7.2892 8.4574 24 14 4.5311 -5.1634 7.3575 25 1 5.2991 -3.9242 7.6403 26 1 3.5009 -5.3581 8.4091 27 1 3.8701 -5.0446 6.0330 28 6 6.7851 -5.5420 2.7895 29 1 7.7383 -5.0153 2.8355 30 6 5.5604 -4.6262 3.0011 31 6 2.1982 -1.1971 -0.0050 32 1 -0.3632 0.0000 -1.0277 33 1 -0.3634 -0.8899 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 1.6583 2.1324 -0.0004 36 1 4.5157 2.8165 -1.0288 37 1 3.7451 3.2620 0.5126 38 1 5.2866 2.3721 0.5128 39 1 5.3517 0.0000 -0.0010 40 1 5.2862 -2.3720 -0.5142 41 1 3.7447 -3.2619 -0.5135 42 1 6.4872 -4.4781 0.0109 43 1 4.9588 -5.3972 0.0451 44 1 5.4320 -8.0162 0.9431 45 1 4.4401 -6.7933 1.7961 46 1 6.4826 -8.7165 2.9064 47 1 5.0036 -8.0692 3.6716 48 1 5.4592 -5.5651 5.0116 49 1 5.4990 -7.0176 9.2838 50 1 5.8074 -3.8174 3.6889 51 1 4.7178 -5.2033 3.3819 52 1 1.6582 -2.1324 -0.0093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026349150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:17 Heat of formation + Delta-G solvation = -3.446058 kcal Electronic energy + Delta-G solvation = -30042.811502 eV Core-core repulsion = 26199.697252 eV Total energy + Delta-G solvation = -3843.114250 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.68982 -39.79586 -38.38402 -35.25929 -33.68838 -33.67303 -33.32369 -31.24546 -29.90425 -28.76682 -28.26394 -27.17530 -26.86622 -25.63516 -23.57123 -22.82368 -21.21221 -20.91107 -19.80668 -19.15417 -18.97420 -17.73691 -17.21435 -16.48553 -16.23819 -15.82918 -15.34551 -15.11950 -14.66911 -14.50827 -14.20269 -14.08213 -13.54080 -13.43500 -13.24748 -13.17699 -13.14703 -13.00250 -12.74987 -12.70770 -12.56941 -12.36065 -12.28371 -12.07083 -11.85255 -11.62948 -11.53272 -11.19022 -11.14441 -10.88209 -10.72520 -10.60911 -10.45107 -10.40761 -10.33674 -9.94018 -9.75161 -9.55796 -8.92265 -8.73598 -8.66736 -8.56259 -7.27092 -5.77120 -3.12961 1.19398 1.25265 2.66699 2.98967 3.41057 3.45428 3.50243 3.60677 4.36026 4.41913 4.51317 4.55001 4.60477 4.61042 4.72430 4.89809 4.95984 5.03369 5.08640 5.14924 5.25416 5.29666 5.32906 5.33642 5.35636 5.38329 5.40034 5.41620 5.41938 5.52506 5.57770 5.63818 5.65805 5.75452 5.76830 5.84055 5.92935 5.97765 6.03244 6.07953 6.20846 6.26809 6.36052 6.38847 6.40316 6.42278 6.48973 6.52393 6.71550 6.89107 6.98058 7.56551 7.99309 8.21389 8.42131 9.20119 9.93120 10.11419 11.41048 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012183 B = 0.002832 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.793947 B = 9886.248125 C =11043.213618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.122 4.122 4 C -0.083 4.083 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.056 4.056 8 C -0.096 4.096 9 C 0.525 3.475 10 O -0.530 6.530 11 N -0.617 5.617 12 C 0.105 3.895 13 C -0.101 4.101 14 H 0.105 0.895 15 C -0.117 4.117 16 C -0.145 4.145 17 C 0.188 3.812 18 H 0.063 0.937 19 N -0.750 5.750 20 C -0.245 4.245 21 H 0.091 0.909 22 C 0.008 3.992 23 N -0.933 5.933 24 Si 0.877 3.123 25 H -0.283 1.283 26 H -0.290 1.290 27 H -0.277 1.277 28 C -0.107 4.107 29 H 0.092 0.908 30 C 0.112 3.888 31 C -0.110 4.110 32 H 0.069 0.931 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.118 0.882 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.064 0.936 43 H 0.068 0.932 44 H 0.060 0.940 45 H 0.062 0.938 46 H 0.056 0.944 47 H 0.074 0.926 48 H 0.363 0.637 49 H 0.260 0.740 50 H 0.076 0.924 51 H 0.078 0.922 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.941 12.341 -25.725 28.802 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.140 4.140 4 C -0.084 4.084 5 C -0.170 4.170 6 C -0.128 4.128 7 C -0.057 4.057 8 C -0.136 4.136 9 C 0.313 3.687 10 O -0.406 6.406 11 N -0.352 5.352 12 C -0.018 4.018 13 C -0.120 4.120 14 H 0.123 0.877 15 C -0.155 4.155 16 C -0.186 4.186 17 C 0.078 3.922 18 H 0.081 0.919 19 N -0.394 5.394 20 C -0.375 4.375 21 H 0.109 0.891 22 C -0.188 4.188 23 N -0.580 5.580 24 Si 0.707 3.293 25 H -0.209 1.209 26 H -0.216 1.216 27 H -0.203 1.203 28 C -0.127 4.127 29 H 0.110 0.890 30 C -0.010 4.010 31 C -0.128 4.128 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.136 0.864 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.083 0.917 43 H 0.086 0.914 44 H 0.079 0.921 45 H 0.081 0.919 46 H 0.075 0.925 47 H 0.093 0.907 48 H 0.198 0.802 49 H 0.070 0.930 50 H 0.094 0.906 51 H 0.096 0.904 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -4.132 12.632 -25.023 28.334 hybrid contribution -0.853 0.850 0.221 1.224 sum -4.984 13.483 -24.803 28.667 Atomic orbital electron populations 1.20779 0.91223 1.02895 1.02109 1.19838 0.95979 0.93019 0.99462 1.20862 0.93491 0.97414 1.02275 1.19834 0.93823 0.95166 0.99526 1.20777 1.00020 0.94077 1.02098 1.20811 0.99447 0.91443 1.01130 1.19235 0.93508 0.93519 0.99410 1.20647 1.02034 0.96083 0.94856 1.20150 0.77762 0.79587 0.91173 1.90759 1.50347 1.53094 1.46363 1.48552 1.56319 1.21780 1.08547 1.22042 0.97770 0.90946 0.91044 1.23164 0.98560 0.94642 0.95664 0.87660 1.22445 0.97818 0.97187 0.98048 1.22934 1.01434 0.99091 0.95106 1.20650 0.95896 0.90433 0.85225 0.91895 1.43065 1.54481 1.36695 1.05132 1.19073 1.23212 1.10351 0.84828 0.89092 1.24645 0.99996 0.98703 0.95498 1.69695 1.47315 1.41941 0.99093 0.86686 0.81578 0.83807 0.77238 1.20900 1.21598 1.20313 1.23236 0.97622 0.96971 0.94823 0.89016 1.22196 0.97717 0.97006 0.84062 1.20821 0.93340 0.97610 1.01079 0.91276 0.91490 0.91590 0.86315 0.91287 0.91600 0.91510 0.86372 0.88104 0.88121 0.91744 0.91409 0.92102 0.91909 0.92506 0.90702 0.80231 0.93042 0.90578 0.90433 0.86366 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.94 10.01 36.01 0.36 -0.58 16 2 C -0.08 -0.91 5.88 -104.62 -0.62 -1.52 16 3 C -0.12 -1.29 9.36 -39.58 -0.37 -1.66 16 4 C -0.08 -0.90 5.88 -104.62 -0.62 -1.51 16 5 C -0.11 -0.91 10.01 36.01 0.36 -0.55 16 6 C -0.11 -1.27 9.36 -39.58 -0.37 -1.64 16 7 C -0.06 -0.67 4.37 -104.63 -0.46 -1.13 16 8 C -0.10 -1.00 5.02 -29.03 -0.15 -1.14 16 9 C 0.53 7.76 7.84 -10.98 -0.09 7.67 16 10 O -0.53 -10.36 16.29 5.56 0.09 -10.27 16 11 N -0.62 -8.54 3.32 -171.08 -0.57 -9.11 16 12 C 0.11 1.05 5.71 -3.19 -0.02 1.03 16 13 C -0.10 -1.11 4.25 -87.26 -0.37 -1.48 16 14 H 0.11 0.93 8.14 -51.93 -0.42 0.50 16 15 C -0.12 -1.45 5.58 -25.16 -0.14 -1.59 16 16 C -0.15 -2.32 6.56 -25.69 -0.17 -2.49 16 17 C 0.19 3.39 3.24 -67.11 -0.22 3.18 16 18 H 0.06 1.17 8.09 -51.93 -0.42 0.75 16 19 N -0.75 -17.40 4.60 -52.63 -0.24 -17.64 16 20 C -0.24 -6.83 10.44 -15.06 -0.16 -6.98 16 21 H 0.09 2.69 8.06 -52.48 -0.42 2.27 16 22 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 23 N -0.93 -29.46 13.97 55.49 0.78 -28.69 16 24 Si 0.88 22.96 27.73 -169.99 -4.71 18.25 16 25 H -0.28 -7.42 7.11 56.52 0.40 -7.02 16 26 H -0.29 -7.65 7.11 56.52 0.40 -7.25 16 27 H -0.28 -6.99 6.52 56.52 0.37 -6.62 16 28 C -0.11 -1.57 4.03 -87.77 -0.35 -1.92 16 29 H 0.09 1.28 8.14 -51.93 -0.42 0.86 16 30 C 0.11 1.88 4.39 -2.86 -0.01 1.87 16 31 C -0.11 -1.30 9.36 -39.59 -0.37 -1.67 16 32 H 0.07 0.47 8.14 -51.93 -0.42 0.05 16 33 H 0.07 0.55 8.09 -51.93 -0.42 0.13 16 34 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 35 H 0.12 1.00 8.06 -52.49 -0.42 0.58 16 36 H 0.07 0.46 8.14 -51.93 -0.42 0.03 16 37 H 0.06 0.47 8.09 -51.93 -0.42 0.06 16 38 H 0.07 0.52 8.09 -51.93 -0.42 0.10 16 39 H 0.12 1.20 8.06 -52.49 -0.42 0.78 16 40 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 41 H 0.10 0.82 8.08 -51.93 -0.42 0.40 16 42 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 43 H 0.07 0.57 7.83 -51.92 -0.41 0.17 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.84 7.27 -51.93 -0.38 0.46 16 46 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 47 H 0.07 1.41 7.91 -51.93 -0.41 1.00 16 48 H 0.36 8.52 3.19 -40.82 -0.13 8.39 16 49 H 0.26 7.84 8.31 -40.82 -0.34 7.51 16 50 H 0.08 1.45 8.02 -51.93 -0.42 1.03 16 51 H 0.08 1.47 6.30 -51.93 -0.33 1.14 16 52 H 0.12 1.24 8.06 -52.49 -0.42 0.82 16 LS Contribution 408.09 15.07 6.15 6.15 Total: -1.00 -34.83 408.09 -11.18 -46.01 By element: Atomic # 1 Polarization: 16.11 SS G_CDS: -8.83 Total: 7.29 kcal Atomic # 6 Polarization: -8.14 SS G_CDS: -3.84 Total: -11.99 kcal Atomic # 7 Polarization: -55.40 SS G_CDS: -0.04 Total: -55.43 kcal Atomic # 8 Polarization: -10.36 SS G_CDS: 0.09 Total: -10.27 kcal Atomic # 14 Polarization: 22.96 SS G_CDS: -4.71 Total: 18.25 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.83 -11.18 -46.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026349150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 42.564 kcal (2) G-P(sol) polarization free energy of solvation -34.829 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.735 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.181 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.010 kcal (6) G-S(sol) free energy of system = (1) + (5) -3.446 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds