Wall clock time and date at job start Wed Apr 1 2020 02:03:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50699 * 1 3 3 C 1.38243 * 120.00066 * 2 1 4 4 C 1.38233 * 119.99834 * 180.02562 * 3 2 1 5 5 C 1.50704 * 120.00015 * 179.97438 * 4 3 2 6 6 C 1.38239 * 120.00310 * 359.95694 * 4 3 2 7 7 C 1.38241 * 119.99655 * 0.02562 * 6 4 3 8 8 C 1.50697 * 119.99678 * 179.97438 * 7 6 4 9 9 C 1.50706 * 109.47337 * 89.99729 * 8 7 6 10 10 O 1.21280 * 119.99607 * 0.02562 * 9 8 7 11 11 N 1.34772 * 119.99784 * 179.97438 * 9 8 7 12 12 C 1.46898 * 125.62439 * 359.97438 * 11 9 8 13 13 C 1.54211 * 107.63809 * 178.51417 * 12 11 9 14 14 H 1.09001 * 113.72078 * 214.27733 * 13 12 11 15 15 C 1.54846 * 108.04532 * 87.00862 * 13 12 11 16 16 C 1.54140 * 104.62674 * 214.54320 * 15 13 12 17 17 C 1.53865 * 106.49582 * 24.50165 * 16 15 13 18 18 H 1.08996 * 109.92219 * 238.75695 * 17 16 15 19 19 N 1.46499 * 109.92328 * 117.64356 * 17 16 15 20 20 C 1.36932 * 119.99549 * 86.45460 * 19 17 16 21 21 H 1.08003 * 120.00354 * 0.02562 * 20 19 17 22 22 C 1.38817 * 120.00011 * 179.97438 * 20 19 17 23 23 N 1.31619 * 120.00154 * 180.02562 * 22 20 19 24 24 Si 1.86798 * 119.99635 * 0.02562 * 22 20 19 25 25 H 1.48506 * 109.47297 * 269.99668 * 24 22 20 26 26 H 1.48503 * 109.47261 * 149.99848 * 24 22 20 27 27 H 1.48500 * 109.47454 * 29.99841 * 24 22 20 28 28 C 1.53718 * 107.03075 * 358.29969 * 17 16 15 29 29 H 1.08998 * 112.96656 * 214.88154 * 28 17 16 30 30 C 1.47343 * 125.61322 * 180.02562 * 11 9 8 31 31 C 1.38230 * 119.99945 * 0.24985 * 7 6 4 32 32 H 1.08999 * 109.46633 * 90.00182 * 1 2 3 33 33 H 1.08997 * 109.47536 * 210.00154 * 1 2 3 34 34 H 1.08997 * 109.46906 * 330.00416 * 1 2 3 35 35 H 1.07991 * 119.99916 * 359.97438 * 3 2 1 36 36 H 1.08992 * 109.47212 * 269.98121 * 5 4 3 37 37 H 1.09000 * 109.46526 * 29.98522 * 5 4 3 38 38 H 1.09005 * 109.46927 * 149.97678 * 5 4 3 39 39 H 1.07997 * 120.00104 * 179.97438 * 6 4 3 40 40 H 1.08998 * 109.47374 * 329.99642 * 8 7 6 41 41 H 1.08998 * 109.47097 * 209.99955 * 8 7 6 42 42 H 1.09004 * 109.82496 * 58.98005 * 12 11 9 43 43 H 1.09008 * 109.88753 * 298.07963 * 12 11 9 44 44 H 1.08999 * 110.40405 * 95.76028 * 15 13 12 45 45 H 1.08998 * 110.40557 * 333.32863 * 15 13 12 46 46 H 1.08995 * 110.04877 * 265.24298 * 16 15 13 47 47 H 1.08996 * 110.04687 * 143.75719 * 16 15 13 48 48 H 0.96993 * 120.00302 * 266.45424 * 19 17 16 49 49 H 0.96998 * 119.99442 * 179.97438 * 23 22 20 50 50 H 1.09004 * 110.29852 * 322.80581 * 30 11 9 51 51 H 1.08997 * 110.30009 * 84.94528 * 30 11 9 52 52 H 1.08001 * 119.99804 * 179.72131 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3341 2.5023 -0.0011 6 6 4.2718 0.0000 -0.0002 7 6 3.5805 -1.1972 0.0002 8 6 4.3340 -2.5023 0.0000 9 6 4.5858 -2.9372 1.4208 10 8 4.1917 -2.2548 2.3427 11 7 5.2480 -4.0850 1.6668 12 6 5.7763 -5.0030 0.6490 13 6 6.4868 -6.1573 1.3845 14 1 7.3608 -6.5406 0.8580 15 6 5.4300 -7.2414 1.7098 16 6 5.8757 -7.8251 3.0650 17 6 6.7112 -6.7342 3.7571 18 1 7.7130 -7.1098 3.9654 19 7 6.0622 -6.3248 5.0050 20 6 6.3070 -7.0146 6.1623 21 1 6.9788 -7.8603 6.1551 22 6 5.6925 -6.6264 7.3449 23 7 5.9281 -7.2892 8.4574 24 14 4.5311 -5.1634 7.3575 25 1 5.2991 -3.9242 7.6403 26 1 3.5009 -5.3581 8.4091 27 1 3.8701 -5.0446 6.0330 28 6 6.7851 -5.5420 2.7895 29 1 7.7383 -5.0153 2.8355 30 6 5.5604 -4.6262 3.0011 31 6 2.1982 -1.1971 -0.0050 32 1 -0.3632 0.0000 -1.0277 33 1 -0.3634 -0.8899 0.5138 34 1 -0.3633 0.8900 0.5138 35 1 1.6583 2.1324 -0.0004 36 1 4.5157 2.8165 -1.0288 37 1 3.7451 3.2620 0.5126 38 1 5.2866 2.3721 0.5128 39 1 5.3517 0.0000 -0.0010 40 1 5.2862 -2.3720 -0.5142 41 1 3.7447 -3.2619 -0.5135 42 1 6.4872 -4.4781 0.0109 43 1 4.9588 -5.3972 0.0451 44 1 5.4320 -8.0162 0.9431 45 1 4.4401 -6.7933 1.7961 46 1 6.4826 -8.7165 2.9064 47 1 5.0036 -8.0692 3.6716 48 1 5.4592 -5.5651 5.0116 49 1 5.4990 -7.0176 9.2838 50 1 5.8074 -3.8174 3.6889 51 1 4.7178 -5.2033 3.3819 52 1 1.6582 -2.1324 -0.0093 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026349150.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:16 Heat of formation + Delta-G solvation = -23.692253 kcal Electronic energy + Delta-G solvation = -30043.689443 eV Core-core repulsion = 26199.697252 eV Total energy + Delta-G solvation = -3843.992191 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.32 seconds Orbital eigenvalues (eV) -41.79079 -40.67195 -39.51648 -36.76916 -34.98787 -34.47671 -34.39920 -33.13428 -31.05947 -30.10157 -29.12596 -27.96298 -27.58745 -26.96229 -25.04507 -24.36744 -22.08966 -21.65294 -20.92907 -20.50102 -20.24173 -19.52793 -18.28303 -17.39268 -17.24200 -16.91267 -16.69095 -16.38757 -16.05892 -15.90803 -15.23519 -14.92193 -14.79595 -14.48705 -14.41462 -14.11067 -14.02520 -13.94989 -13.88320 -13.85007 -13.73170 -13.50163 -13.38080 -13.25656 -13.19232 -12.70940 -12.58184 -12.37527 -12.32387 -12.17705 -11.94659 -11.88132 -11.84217 -11.69141 -11.58130 -11.55694 -11.33679 -11.02143 -10.92991 -9.68417 -9.53890 -9.44404 -9.31752 -8.08137 -5.38278 0.38259 0.45660 1.27271 1.30753 1.33962 1.58733 1.96047 2.38966 2.79486 3.22595 3.27069 3.44006 3.61962 3.70805 3.80282 3.83911 3.92013 4.05387 4.18483 4.20702 4.28013 4.32089 4.37728 4.39821 4.42370 4.49677 4.56584 4.60960 4.63365 4.66385 4.67640 4.75194 4.76599 4.78100 4.82205 4.86885 4.97139 5.03927 5.06152 5.10816 5.22496 5.25275 5.26647 5.30256 5.33810 5.53200 5.56768 5.59309 5.62265 5.70236 5.77338 6.13194 6.18265 6.53336 7.03783 7.12664 7.82662 7.97548 9.13856 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012183 B = 0.002832 C = 0.002535 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2297.793947 B = 9886.248125 C =11043.213618 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.112 4.112 2 C -0.096 4.096 3 C -0.135 4.135 4 C -0.095 4.095 5 C -0.111 4.111 6 C -0.129 4.129 7 C -0.072 4.072 8 C -0.084 4.084 9 C 0.519 3.481 10 O -0.590 6.590 11 N -0.614 5.614 12 C 0.100 3.900 13 C -0.082 4.082 14 H 0.145 0.855 15 C -0.109 4.109 16 C -0.142 4.142 17 C 0.174 3.826 18 H 0.057 0.943 19 N -0.756 5.756 20 C -0.219 4.219 21 H 0.067 0.933 22 C -0.056 4.056 23 N -0.980 5.980 24 Si 0.934 3.066 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.269 1.269 28 C -0.102 4.102 29 H 0.102 0.898 30 C 0.114 3.886 31 C -0.132 4.132 32 H 0.085 0.915 33 H 0.063 0.937 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.085 0.915 37 H 0.072 0.928 38 H 0.065 0.935 39 H 0.127 0.873 40 H 0.132 0.868 41 H 0.128 0.872 42 H 0.102 0.898 43 H 0.094 0.906 44 H 0.095 0.905 45 H 0.049 0.951 46 H 0.070 0.930 47 H 0.037 0.963 48 H 0.361 0.639 49 H 0.257 0.743 50 H 0.041 0.959 51 H 0.049 0.951 52 H 0.123 0.877 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.673 13.062 -30.153 33.065 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.096 4.096 3 C -0.153 4.153 4 C -0.095 4.095 5 C -0.168 4.168 6 C -0.147 4.147 7 C -0.072 4.072 8 C -0.123 4.123 9 C 0.310 3.690 10 O -0.470 6.470 11 N -0.348 5.348 12 C -0.021 4.021 13 C -0.100 4.100 14 H 0.163 0.837 15 C -0.147 4.147 16 C -0.182 4.182 17 C 0.066 3.934 18 H 0.075 0.925 19 N -0.401 5.401 20 C -0.350 4.350 21 H 0.085 0.915 22 C -0.248 4.248 23 N -0.631 5.631 24 Si 0.764 3.236 25 H -0.210 1.210 26 H -0.218 1.218 27 H -0.195 1.195 28 C -0.121 4.121 29 H 0.120 0.880 30 C -0.009 4.009 31 C -0.150 4.150 32 H 0.103 0.897 33 H 0.082 0.918 34 H 0.092 0.908 35 H 0.154 0.846 36 H 0.103 0.897 37 H 0.091 0.909 38 H 0.084 0.916 39 H 0.145 0.855 40 H 0.150 0.850 41 H 0.146 0.854 42 H 0.120 0.880 43 H 0.113 0.887 44 H 0.113 0.887 45 H 0.068 0.932 46 H 0.088 0.912 47 H 0.056 0.944 48 H 0.196 0.804 49 H 0.066 0.934 50 H 0.060 0.940 51 H 0.067 0.933 52 H 0.141 0.859 Dipole moment (debyes) X Y Z Total from point charges -3.844 13.333 -29.553 32.648 hybrid contribution -0.883 0.570 1.565 1.885 sum -4.727 13.903 -27.987 31.606 Atomic orbital electron populations 1.20811 0.89670 1.03123 1.03208 1.20213 0.97378 0.93053 0.98930 1.21165 0.93769 0.98141 1.02199 1.20224 0.94309 0.96134 0.98844 1.20812 0.99723 0.92998 1.03230 1.21071 1.00096 0.91852 1.01713 1.19503 0.93826 0.94407 0.99506 1.20682 1.03877 0.95924 0.91789 1.21014 0.76567 0.78994 0.92473 1.90731 1.52799 1.54991 1.48526 1.48638 1.55902 1.22114 1.08131 1.22380 0.99401 0.90077 0.90220 1.23253 0.99379 0.94178 0.93215 0.83737 1.22412 0.97541 0.98375 0.96347 1.22770 0.99717 0.98989 0.96726 1.21013 0.95364 0.92854 0.84141 0.92521 1.43181 1.54914 1.36280 1.05701 1.19111 1.20743 1.08872 0.86281 0.91482 1.25259 1.02449 1.01563 0.95516 1.69830 1.49450 1.44098 0.99715 0.85738 0.79780 0.80827 0.77281 1.21001 1.21758 1.19514 1.23138 0.97109 0.95326 0.96564 0.87951 1.21894 0.97600 0.95954 0.85487 1.21065 0.93777 0.98249 1.01909 0.89668 0.91768 0.90835 0.84583 0.89661 0.90893 0.91572 0.85525 0.84977 0.85388 0.88000 0.88741 0.88695 0.93186 0.91158 0.94357 0.80413 0.93382 0.93991 0.93302 0.85868 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.71 10.01 71.24 0.71 -1.00 16 2 C -0.10 -2.01 5.88 -19.86 -0.12 -2.12 16 3 C -0.13 -2.70 9.36 22.27 0.21 -2.50 16 4 C -0.10 -1.95 5.88 -19.86 -0.12 -2.06 16 5 C -0.11 -1.62 10.01 71.24 0.71 -0.90 16 6 C -0.13 -2.84 9.36 22.27 0.21 -2.63 16 7 C -0.07 -1.61 4.37 -19.87 -0.09 -1.70 16 8 C -0.08 -1.47 5.02 29.10 0.15 -1.32 16 9 C 0.52 14.57 7.84 87.66 0.69 15.25 16 10 O -0.59 -23.46 16.29 -3.03 -0.05 -23.51 16 11 N -0.61 -15.59 3.32 -813.58 -2.70 -18.29 16 12 C 0.10 1.46 5.71 86.71 0.50 1.96 16 13 C -0.08 -1.39 4.25 -8.62 -0.04 -1.43 16 14 H 0.14 1.51 8.14 -2.39 -0.02 1.49 16 15 C -0.11 -2.30 5.58 31.61 0.18 -2.12 16 16 C -0.14 -4.38 6.56 31.27 0.21 -4.17 16 17 C 0.17 6.21 3.24 45.53 0.15 6.36 16 18 H 0.06 2.08 8.09 -2.39 -0.02 2.06 16 19 N -0.76 -35.94 4.60 -320.41 -1.47 -37.41 16 20 C -0.22 -12.61 10.44 84.04 0.88 -11.73 16 21 H 0.07 4.13 8.06 -2.91 -0.02 4.11 16 22 C -0.06 -3.43 5.50 84.86 0.47 -2.96 16 23 N -0.98 -64.18 13.97 21.65 0.30 -63.87 16 24 Si 0.93 49.35 27.73 68.60 1.90 51.26 16 25 H -0.28 -14.87 7.11 99.48 0.71 -14.17 16 26 H -0.29 -15.33 7.11 99.48 0.71 -14.63 16 27 H -0.27 -13.67 6.52 99.48 0.65 -13.02 16 28 C -0.10 -2.79 4.03 -8.95 -0.04 -2.82 16 29 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 30 C 0.11 3.80 4.39 86.69 0.38 4.18 16 31 C -0.13 -2.98 9.36 22.27 0.21 -2.77 16 32 H 0.08 1.01 8.14 -2.39 -0.02 0.99 16 33 H 0.06 1.00 8.09 -2.39 -0.02 0.98 16 34 H 0.07 0.99 8.09 -2.39 -0.02 0.97 16 35 H 0.14 2.10 8.06 -2.92 -0.02 2.08 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.94 8.09 -2.39 -0.02 0.92 16 38 H 0.07 0.96 8.09 -2.38 -0.02 0.94 16 39 H 0.13 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.13 1.48 8.09 -2.39 -0.02 1.46 16 41 H 0.13 1.54 8.08 -2.39 -0.02 1.52 16 42 H 0.10 0.87 8.14 -2.38 -0.02 0.85 16 43 H 0.09 0.99 7.83 -2.38 -0.02 0.97 16 44 H 0.09 1.44 8.14 -2.39 -0.02 1.42 16 45 H 0.05 1.21 7.27 -2.39 -0.02 1.19 16 46 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 47 H 0.04 1.45 7.91 -2.39 -0.02 1.43 16 48 H 0.36 17.43 3.19 -92.71 -0.30 17.14 16 49 H 0.26 16.14 8.31 -92.71 -0.77 15.37 16 50 H 0.04 1.65 8.02 -2.38 -0.02 1.63 16 51 H 0.05 1.89 6.30 -2.39 -0.02 1.88 16 52 H 0.12 2.49 8.06 -2.91 -0.02 2.47 16 Total: -1.00 -82.17 408.09 3.76 -78.41 By element: Atomic # 1 Polarization: 27.38 SS G_CDS: 0.54 Total: 27.92 kcal Atomic # 6 Polarization: -19.74 SS G_CDS: 5.24 Total: -14.50 kcal Atomic # 7 Polarization: -115.70 SS G_CDS: -3.87 Total: -119.58 kcal Atomic # 8 Polarization: -23.46 SS G_CDS: -0.05 Total: -23.51 kcal Atomic # 14 Polarization: 49.35 SS G_CDS: 1.90 Total: 51.26 kcal Total: -82.17 3.76 -78.41 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026349150.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.715 kcal (2) G-P(sol) polarization free energy of solvation -82.169 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -27.454 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.762 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.407 kcal (6) G-S(sol) free energy of system = (1) + (5) -23.692 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.32 seconds