Wall clock time and date at job start Wed Apr 1 2020 02:03:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38243 * 120.00283 * 2 1 4 4 C 1.38230 * 120.00076 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99847 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.00326 * 0.02562 * 4 3 2 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 4 3 8 8 C 1.50706 * 120.00196 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.46655 * 90.00209 * 8 7 6 10 10 O 1.21274 * 120.00126 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99437 * 180.02562 * 9 8 7 12 12 C 1.49625 * 126.07797 * 359.68643 * 11 9 8 13 13 C 1.51761 * 102.38250 * 154.30457 * 12 11 9 14 14 H 1.08994 * 111.73735 * 288.25081 * 13 12 11 15 15 C 1.51561 * 123.23312 * 151.77925 * 13 12 11 16 16 C 1.56341 * 101.80778 * 208.17048 * 15 13 12 17 17 C 1.55995 * 105.77232 * 25.43671 * 16 15 13 18 18 H 1.08999 * 110.52719 * 125.58307 * 17 16 15 19 19 N 1.46495 * 110.53045 * 248.33556 * 17 16 15 20 20 C 1.36935 * 120.00279 * 269.56643 * 19 17 16 21 21 H 1.07994 * 119.99885 * 0.02562 * 20 19 17 22 22 C 1.38809 * 120.00118 * 179.97438 * 20 19 17 23 23 N 1.31624 * 120.00277 * 180.02562 * 22 20 19 24 24 Si 1.86809 * 120.00059 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46955 * 89.99969 * 24 22 20 26 26 H 1.48499 * 109.46959 * 209.99778 * 24 22 20 27 27 H 1.48496 * 109.46968 * 330.00007 * 24 22 20 28 28 C 1.49712 * 103.98513 * 6.96533 * 17 16 15 29 29 H 1.08994 * 108.55083 * 76.79854 * 28 17 16 30 30 C 1.49288 * 126.07316 * 180.02562 * 11 9 8 31 31 C 1.38235 * 120.00119 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47159 * 89.99780 * 1 2 3 33 33 H 1.08999 * 109.47434 * 210.00340 * 1 2 3 34 34 H 1.09003 * 109.46837 * 330.00005 * 1 2 3 35 35 H 1.08002 * 119.99532 * 359.97438 * 3 2 1 36 36 H 1.08999 * 109.46988 * 270.01830 * 5 4 3 37 37 H 1.08990 * 109.47415 * 30.02080 * 5 4 3 38 38 H 1.09006 * 109.46768 * 150.01979 * 5 4 3 39 39 H 1.08000 * 120.00616 * 179.70664 * 6 4 3 40 40 H 1.08998 * 109.47268 * 210.00355 * 8 7 6 41 41 H 1.08998 * 109.47151 * 330.00502 * 8 7 6 42 42 H 1.08998 * 110.80444 * 272.64149 * 12 11 9 43 43 H 1.09002 * 110.79743 * 36.13380 * 12 11 9 44 44 H 1.09001 * 110.96265 * 90.04220 * 15 13 12 45 45 H 1.08997 * 110.96471 * 326.29685 * 15 13 12 46 46 H 1.09006 * 110.18584 * 266.36152 * 16 15 13 47 47 H 1.09001 * 110.25578 * 144.55275 * 16 15 13 48 48 H 0.97005 * 119.99875 * 89.56486 * 19 17 16 49 49 H 0.96998 * 119.99984 * 179.97438 * 23 22 20 50 50 H 1.08997 * 110.39716 * 292.38095 * 30 11 9 51 51 H 1.09006 * 110.39714 * 54.77240 * 30 11 9 52 52 H 1.08005 * 119.99808 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5022 0.0011 6 6 4.2717 0.0000 0.0005 7 6 3.5805 -1.1971 0.0005 8 6 4.3340 -2.5023 0.0000 9 6 4.5856 -2.9376 1.4206 10 8 4.1915 -2.2555 2.3427 11 7 5.2486 -4.0850 1.6664 12 6 5.7866 -5.0294 0.6380 13 6 6.9235 -5.7065 1.3811 14 1 7.7674 -5.0326 1.5284 15 6 7.3954 -7.1135 1.0735 16 6 7.9572 -7.5725 2.4584 17 6 7.1992 -6.7241 3.5257 18 1 6.7279 -7.3721 4.2647 19 7 8.1126 -5.7810 4.1756 20 6 8.7850 -6.1503 5.3099 21 1 8.6422 -7.1370 5.7252 22 6 9.6508 -5.2569 5.9255 23 7 10.2975 -5.6120 7.0155 24 14 9.8983 -3.5504 5.2068 25 1 8.9086 -2.6153 5.7997 26 1 11.2720 -3.0780 5.5149 27 1 9.7108 -3.6014 3.7346 28 6 6.1621 -5.9897 2.7342 29 1 5.3533 -6.6808 2.4969 30 6 5.5706 -4.6431 3.0131 31 6 2.1981 -1.1971 0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.6582 2.1325 -0.0004 36 1 4.5158 2.8173 -1.0264 37 1 3.7450 3.2616 0.5152 38 1 5.2864 2.3716 0.5150 39 1 5.3517 -0.0001 -0.0038 40 1 3.7447 -3.2618 -0.5139 41 1 5.2862 -2.3719 -0.5141 42 1 5.0278 -5.7542 0.3434 43 1 6.1610 -4.4851 -0.2290 44 1 8.1807 -7.1049 0.3176 45 1 6.5631 -7.7445 0.7618 46 1 9.0281 -7.3767 2.5135 47 1 7.7608 -8.6336 2.6124 48 1 8.2411 -4.8949 3.8024 49 1 10.9028 -4.9877 7.4453 50 1 6.2947 -4.0086 3.5240 51 1 4.6638 -4.7425 3.6098 52 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026349151.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:21 Heat of formation + Delta-G solvation = 8.477609 kcal Electronic energy + Delta-G solvation = -29867.823033 eV Core-core repulsion = 26025.225832 eV Total energy + Delta-G solvation = -3842.597201 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -40.71056 -39.85072 -38.46935 -35.34450 -33.68908 -33.66933 -33.37782 -31.13834 -30.15679 -28.82070 -28.18376 -27.10938 -26.86468 -25.67771 -23.39807 -22.76174 -21.17165 -20.90985 -20.15665 -19.09743 -18.94860 -17.84950 -16.75289 -16.55719 -16.31913 -16.05628 -15.23158 -14.87302 -14.56740 -14.52158 -14.21158 -14.06581 -13.96606 -13.76393 -13.43506 -13.13860 -13.11671 -12.78553 -12.75187 -12.69955 -12.60659 -12.40998 -12.10422 -11.92984 -11.72767 -11.61377 -11.47118 -11.18131 -11.14296 -11.11098 -10.90657 -10.78498 -10.48178 -10.35664 -10.14085 -9.89892 -9.68400 -9.57122 -8.95032 -8.73413 -8.66799 -8.61317 -7.29570 -5.78634 -3.14348 1.19406 1.25389 2.68728 2.87667 3.36211 3.40460 3.46011 3.58859 4.07715 4.42869 4.55439 4.57803 4.59902 4.61092 4.81309 4.95991 5.01403 5.05098 5.09219 5.14828 5.16705 5.24211 5.30963 5.33309 5.35370 5.39326 5.41151 5.42208 5.46284 5.51012 5.56738 5.63137 5.66544 5.68279 5.81002 5.87309 5.97285 6.03247 6.03548 6.11244 6.14633 6.25356 6.30919 6.38714 6.39111 6.39641 6.48776 6.49232 6.67656 6.89201 6.91651 7.53546 7.97642 8.21113 8.40718 9.18452 9.91198 10.10268 11.39643 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.002724 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.057640 B =10276.561909 C =11541.189921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.084 4.084 3 C -0.122 4.122 4 C -0.083 4.083 5 C -0.114 4.114 6 C -0.110 4.110 7 C -0.056 4.056 8 C -0.097 4.097 9 C 0.527 3.473 10 O -0.532 6.532 11 N -0.627 5.627 12 C 0.117 3.883 13 C -0.128 4.128 14 H 0.089 0.911 15 C -0.099 4.099 16 C -0.145 4.145 17 C 0.202 3.798 18 H 0.066 0.934 19 N -0.742 5.742 20 C -0.244 4.244 21 H 0.092 0.908 22 C 0.007 3.993 23 N -0.933 5.933 24 Si 0.879 3.121 25 H -0.283 1.283 26 H -0.291 1.291 27 H -0.279 1.279 28 C -0.124 4.124 29 H 0.073 0.927 30 C 0.133 3.867 31 C -0.110 4.110 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.069 0.931 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.073 0.927 43 H 0.075 0.925 44 H 0.062 0.938 45 H 0.064 0.936 46 H 0.076 0.924 47 H 0.058 0.942 48 H 0.361 0.639 49 H 0.259 0.741 50 H 0.074 0.926 51 H 0.072 0.928 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.258 7.229 -21.589 27.976 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.084 4.084 3 C -0.140 4.140 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.128 4.128 7 C -0.056 4.056 8 C -0.137 4.137 9 C 0.315 3.685 10 O -0.408 6.408 11 N -0.363 5.363 12 C -0.005 4.005 13 C -0.148 4.148 14 H 0.108 0.892 15 C -0.137 4.137 16 C -0.185 4.185 17 C 0.092 3.908 18 H 0.084 0.916 19 N -0.385 5.385 20 C -0.374 4.374 21 H 0.109 0.891 22 C -0.189 4.189 23 N -0.580 5.580 24 Si 0.710 3.290 25 H -0.209 1.209 26 H -0.217 1.217 27 H -0.205 1.205 28 C -0.144 4.144 29 H 0.091 0.909 30 C 0.012 3.988 31 C -0.128 4.128 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.091 0.909 43 H 0.094 0.906 44 H 0.081 0.919 45 H 0.083 0.917 46 H 0.095 0.905 47 H 0.077 0.923 48 H 0.194 0.806 49 H 0.070 0.930 50 H 0.093 0.907 51 H 0.090 0.910 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -16.437 7.573 -20.869 27.623 hybrid contribution 0.437 1.138 -0.410 1.286 sum -15.999 8.711 -21.279 28.012 Atomic orbital electron populations 1.20772 0.91247 1.02822 1.02094 1.19827 0.95939 0.93027 0.99617 1.20861 0.93477 0.97416 1.02295 1.19837 0.93824 0.95177 0.99424 1.20784 1.00075 0.94053 1.02133 1.20838 0.99543 0.91476 1.00951 1.19239 0.93503 0.93508 0.99389 1.20656 1.02051 0.96059 0.94934 1.20133 0.77608 0.79594 0.91125 1.90746 1.50733 1.52956 1.46330 1.49904 1.56382 1.21848 1.08210 1.21842 0.95554 0.92190 0.90934 1.22702 0.97266 0.98004 0.96784 0.89248 1.21842 1.00011 0.93618 0.98255 1.23823 1.01965 0.99454 0.93308 1.19990 0.88074 0.90687 0.92083 0.91595 1.42791 1.51788 1.13445 1.30438 1.19078 1.18110 1.00417 0.99758 0.89059 1.24651 0.99221 0.97727 0.97282 1.69693 1.32049 1.35654 1.20617 0.86642 0.77488 0.86309 0.78609 1.20939 1.21694 1.20525 1.22127 0.98542 0.96030 0.97732 0.90855 1.20905 1.00224 0.94201 0.83484 1.20799 0.93287 0.97547 1.01209 0.91302 0.91544 0.91612 0.86319 0.91266 0.91587 0.91460 0.86339 0.88120 0.88110 0.90856 0.90644 0.91943 0.91745 0.90483 0.92348 0.80579 0.93044 0.90734 0.90996 0.86399 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.00 0.36 -0.51 16 2 C -0.08 -0.89 5.88 -104.62 -0.62 -1.51 16 3 C -0.12 -1.28 9.36 -39.58 -0.37 -1.65 16 4 C -0.08 -0.91 5.88 -104.63 -0.62 -1.52 16 5 C -0.11 -0.96 10.01 36.01 0.36 -0.60 16 6 C -0.11 -1.31 9.36 -39.58 -0.37 -1.68 16 7 C -0.06 -0.67 4.37 -104.62 -0.46 -1.12 16 8 C -0.10 -1.02 4.88 -29.03 -0.14 -1.16 16 9 C 0.53 7.75 7.87 -10.98 -0.09 7.66 16 10 O -0.53 -10.19 16.40 5.56 0.09 -10.10 16 11 N -0.63 -8.68 3.42 -171.43 -0.59 -9.26 16 12 C 0.12 1.22 6.48 -2.93 -0.02 1.20 16 13 C -0.13 -1.63 3.09 -89.33 -0.28 -1.91 16 14 H 0.09 1.35 7.87 -51.93 -0.41 0.94 16 15 C -0.10 -1.16 6.59 -25.66 -0.17 -1.32 16 16 C -0.14 -2.20 6.74 -23.33 -0.16 -2.36 16 17 C 0.20 3.59 3.47 -67.96 -0.24 3.35 16 18 H 0.07 1.21 8.09 -51.93 -0.42 0.79 16 19 N -0.74 -16.75 4.66 -53.46 -0.25 -16.99 16 20 C -0.24 -6.68 10.44 -15.06 -0.16 -6.84 16 21 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 22 C 0.01 0.21 5.50 -17.43 -0.10 0.11 16 23 N -0.93 -29.15 13.97 55.49 0.78 -28.37 16 24 Si 0.88 22.35 27.74 -169.99 -4.71 17.64 16 25 H -0.28 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.48 7.11 56.52 0.40 -7.08 16 27 H -0.28 -6.68 6.52 56.52 0.37 -6.31 16 28 C -0.12 -1.82 2.29 -91.23 -0.21 -2.03 16 29 H 0.07 0.94 7.93 -51.93 -0.41 0.53 16 30 C 0.13 2.14 6.67 -4.13 -0.03 2.11 16 31 C -0.11 -1.25 9.36 -39.58 -0.37 -1.62 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.02 16 33 H 0.07 0.49 8.09 -51.93 -0.42 0.08 16 34 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 36 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 37 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 38 H 0.07 0.57 8.09 -51.93 -0.42 0.15 16 39 H 0.12 1.30 8.06 -52.49 -0.42 0.88 16 40 H 0.10 0.80 8.09 -51.93 -0.42 0.38 16 41 H 0.10 0.87 7.86 -51.93 -0.41 0.46 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 43 H 0.08 0.63 7.58 -51.93 -0.39 0.24 16 44 H 0.06 0.68 8.14 -51.93 -0.42 0.25 16 45 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 46 H 0.08 1.36 7.98 -51.93 -0.41 0.95 16 47 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 48 H 0.36 8.22 4.58 -40.82 -0.19 8.03 16 49 H 0.26 7.77 8.31 -40.82 -0.34 7.43 16 50 H 0.07 1.42 7.22 -51.93 -0.37 1.04 16 51 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 52 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 412.23 15.07 6.21 6.21 Total: -1.00 -34.05 412.23 -11.06 -45.11 By element: Atomic # 1 Polarization: 16.12 SS G_CDS: -8.94 Total: 7.18 kcal Atomic # 6 Polarization: -7.76 SS G_CDS: -3.65 Total: -11.41 kcal Atomic # 7 Polarization: -54.57 SS G_CDS: -0.06 Total: -54.63 kcal Atomic # 8 Polarization: -10.19 SS G_CDS: 0.09 Total: -10.10 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -4.71 Total: 17.64 kcal Total LS contribution 6.21 Total: 6.21 kcal Total: -34.05 -11.06 -45.11 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026349151.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.588 kcal (2) G-P(sol) polarization free energy of solvation -34.049 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 19.539 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.111 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.478 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds