Wall clock time and date at job start Wed Apr 1 2020 02:03:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50693 * 1 3 3 C 1.38243 * 120.00283 * 2 1 4 4 C 1.38230 * 120.00076 * 179.97438 * 3 2 1 5 5 C 1.50701 * 119.99847 * 180.02562 * 4 3 2 6 6 C 1.38235 * 120.00326 * 0.02562 * 4 3 2 7 7 C 1.38234 * 119.99814 * 359.97438 * 6 4 3 8 8 C 1.50706 * 120.00196 * 179.97438 * 7 6 4 9 9 C 1.50703 * 109.46655 * 90.00209 * 8 7 6 10 10 O 1.21274 * 120.00126 * 0.02562 * 9 8 7 11 11 N 1.34777 * 119.99437 * 180.02562 * 9 8 7 12 12 C 1.49625 * 126.07797 * 359.68643 * 11 9 8 13 13 C 1.51761 * 102.38250 * 154.30457 * 12 11 9 14 14 H 1.08994 * 111.73735 * 288.25081 * 13 12 11 15 15 C 1.51561 * 123.23312 * 151.77925 * 13 12 11 16 16 C 1.56341 * 101.80778 * 208.17048 * 15 13 12 17 17 C 1.55995 * 105.77232 * 25.43671 * 16 15 13 18 18 H 1.08999 * 110.52719 * 125.58307 * 17 16 15 19 19 N 1.46495 * 110.53045 * 248.33556 * 17 16 15 20 20 C 1.36935 * 120.00279 * 269.56643 * 19 17 16 21 21 H 1.07994 * 119.99885 * 0.02562 * 20 19 17 22 22 C 1.38809 * 120.00118 * 179.97438 * 20 19 17 23 23 N 1.31624 * 120.00277 * 180.02562 * 22 20 19 24 24 Si 1.86809 * 120.00059 * 0.02562 * 22 20 19 25 25 H 1.48501 * 109.46955 * 89.99969 * 24 22 20 26 26 H 1.48499 * 109.46959 * 209.99778 * 24 22 20 27 27 H 1.48496 * 109.46968 * 330.00007 * 24 22 20 28 28 C 1.49712 * 103.98513 * 6.96533 * 17 16 15 29 29 H 1.08994 * 108.55083 * 76.79854 * 28 17 16 30 30 C 1.49288 * 126.07316 * 180.02562 * 11 9 8 31 31 C 1.38235 * 120.00119 * 179.97438 * 2 1 3 32 32 H 1.09002 * 109.47159 * 89.99780 * 1 2 3 33 33 H 1.08999 * 109.47434 * 210.00340 * 1 2 3 34 34 H 1.09003 * 109.46837 * 330.00005 * 1 2 3 35 35 H 1.08002 * 119.99532 * 359.97438 * 3 2 1 36 36 H 1.08999 * 109.46988 * 270.01830 * 5 4 3 37 37 H 1.08990 * 109.47415 * 30.02080 * 5 4 3 38 38 H 1.09006 * 109.46768 * 150.01979 * 5 4 3 39 39 H 1.08000 * 120.00616 * 179.70664 * 6 4 3 40 40 H 1.08998 * 109.47268 * 210.00355 * 8 7 6 41 41 H 1.08998 * 109.47151 * 330.00502 * 8 7 6 42 42 H 1.08998 * 110.80444 * 272.64149 * 12 11 9 43 43 H 1.09002 * 110.79743 * 36.13380 * 12 11 9 44 44 H 1.09001 * 110.96265 * 90.04220 * 15 13 12 45 45 H 1.08997 * 110.96471 * 326.29685 * 15 13 12 46 46 H 1.09006 * 110.18584 * 266.36152 * 16 15 13 47 47 H 1.09001 * 110.25578 * 144.55275 * 16 15 13 48 48 H 0.97005 * 119.99875 * 89.56486 * 19 17 16 49 49 H 0.96998 * 119.99984 * 179.97438 * 23 22 20 50 50 H 1.08997 * 110.39716 * 292.38095 * 30 11 9 51 51 H 1.09006 * 110.39714 * 54.77240 * 30 11 9 52 52 H 1.08005 * 119.99808 * 359.97438 * 31 2 1 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5069 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1971 0.0005 5 6 4.3340 2.5022 0.0011 6 6 4.2717 0.0000 0.0005 7 6 3.5805 -1.1971 0.0005 8 6 4.3340 -2.5023 0.0000 9 6 4.5856 -2.9376 1.4206 10 8 4.1915 -2.2555 2.3427 11 7 5.2486 -4.0850 1.6664 12 6 5.7866 -5.0294 0.6380 13 6 6.9235 -5.7065 1.3811 14 1 7.7674 -5.0326 1.5284 15 6 7.3954 -7.1135 1.0735 16 6 7.9572 -7.5725 2.4584 17 6 7.1992 -6.7241 3.5257 18 1 6.7279 -7.3721 4.2647 19 7 8.1126 -5.7810 4.1756 20 6 8.7850 -6.1503 5.3099 21 1 8.6422 -7.1370 5.7252 22 6 9.6508 -5.2569 5.9255 23 7 10.2975 -5.6120 7.0155 24 14 9.8983 -3.5504 5.2068 25 1 8.9086 -2.6153 5.7997 26 1 11.2720 -3.0780 5.5149 27 1 9.7108 -3.6014 3.7346 28 6 6.1621 -5.9897 2.7342 29 1 5.3533 -6.6808 2.4969 30 6 5.5706 -4.6431 3.0131 31 6 2.1981 -1.1971 0.0005 32 1 -0.3633 0.0000 -1.0277 33 1 -0.3634 -0.8899 0.5139 34 1 -0.3633 0.8900 0.5139 35 1 1.6582 2.1325 -0.0004 36 1 4.5158 2.8173 -1.0264 37 1 3.7450 3.2616 0.5152 38 1 5.2864 2.3716 0.5150 39 1 5.3517 -0.0001 -0.0038 40 1 3.7447 -3.2618 -0.5139 41 1 5.2862 -2.3719 -0.5141 42 1 5.0278 -5.7542 0.3434 43 1 6.1610 -4.4851 -0.2290 44 1 8.1807 -7.1049 0.3176 45 1 6.5631 -7.7445 0.7618 46 1 9.0281 -7.3767 2.5135 47 1 7.7608 -8.6336 2.6124 48 1 8.2411 -4.8949 3.8024 49 1 10.9028 -4.9877 7.4453 50 1 6.2947 -4.0086 3.5240 51 1 4.6638 -4.7425 3.6098 52 1 1.6581 -2.1325 0.0014 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026349151.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:20 Heat of formation + Delta-G solvation = -10.962140 kcal Electronic energy + Delta-G solvation = -29868.666003 eV Core-core repulsion = 26025.225832 eV Total energy + Delta-G solvation = -3843.440172 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.82120 -40.72753 -39.57104 -36.78126 -35.08299 -34.49149 -34.39574 -33.00971 -31.28808 -30.11722 -29.00351 -27.89342 -27.58342 -27.01115 -24.85691 -24.32033 -22.04177 -21.64888 -21.19037 -20.52271 -20.05403 -19.71905 -17.87478 -17.60066 -17.20531 -16.98418 -16.58635 -16.26289 -15.92694 -15.63039 -15.46972 -15.15822 -14.94970 -14.81986 -14.61313 -14.02202 -14.00474 -13.89405 -13.86906 -13.68462 -13.56894 -13.38545 -13.37046 -13.16957 -13.00023 -12.69950 -12.57381 -12.37710 -12.26728 -12.25065 -11.98333 -11.92838 -11.88790 -11.87638 -11.60633 -11.45700 -11.08815 -10.95620 -10.85473 -9.74791 -9.53544 -9.44135 -9.30635 -8.05142 -5.35748 0.38444 0.45997 1.28699 1.33553 1.37974 1.60977 1.84254 2.42518 2.78110 2.99108 3.27288 3.55596 3.59838 3.70673 3.82914 3.90491 3.92622 3.99721 4.13503 4.20919 4.30134 4.33293 4.40267 4.45288 4.46932 4.50519 4.57027 4.61407 4.63669 4.67806 4.70609 4.72182 4.77823 4.83216 4.83905 4.93631 4.97495 5.01472 5.03959 5.05127 5.17791 5.23494 5.26138 5.34223 5.36723 5.43362 5.59662 5.62671 5.63050 5.70648 5.79269 6.13466 6.20813 6.49647 7.06358 7.12366 7.84661 8.00939 9.16809 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012924 B = 0.002724 C = 0.002426 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2166.057640 B =10276.561909 C =11541.189921 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.094 4.094 3 C -0.134 4.134 4 C -0.096 4.096 5 C -0.112 4.112 6 C -0.134 4.134 7 C -0.071 4.071 8 C -0.086 4.086 9 C 0.522 3.478 10 O -0.588 6.588 11 N -0.626 5.626 12 C 0.121 3.879 13 C -0.117 4.117 14 H 0.061 0.939 15 C -0.082 4.082 16 C -0.141 4.141 17 C 0.188 3.812 18 H 0.052 0.948 19 N -0.746 5.746 20 C -0.218 4.218 21 H 0.063 0.937 22 C -0.061 4.061 23 N -0.982 5.982 24 Si 0.942 3.058 25 H -0.291 1.291 26 H -0.293 1.293 27 H -0.257 1.257 28 C -0.127 4.127 29 H 0.105 0.895 30 C 0.133 3.867 31 C -0.127 4.127 32 H 0.084 0.916 33 H 0.067 0.933 34 H 0.072 0.928 35 H 0.137 0.863 36 H 0.084 0.916 37 H 0.074 0.926 38 H 0.062 0.938 39 H 0.120 0.880 40 H 0.134 0.866 41 H 0.124 0.876 42 H 0.108 0.892 43 H 0.107 0.893 44 H 0.078 0.922 45 H 0.098 0.902 46 H 0.047 0.953 47 H 0.072 0.928 48 H 0.361 0.639 49 H 0.256 0.744 50 H 0.035 0.965 51 H 0.060 0.940 52 H 0.129 0.871 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.027 7.138 -25.833 32.300 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.094 4.094 3 C -0.152 4.152 4 C -0.096 4.096 5 C -0.169 4.169 6 C -0.152 4.152 7 C -0.072 4.072 8 C -0.125 4.125 9 C 0.312 3.688 10 O -0.468 6.468 11 N -0.360 5.360 12 C 0.001 3.999 13 C -0.136 4.136 14 H 0.080 0.920 15 C -0.120 4.120 16 C -0.181 4.181 17 C 0.079 3.921 18 H 0.070 0.930 19 N -0.389 5.389 20 C -0.350 4.350 21 H 0.081 0.919 22 C -0.252 4.252 23 N -0.634 5.634 24 Si 0.771 3.229 25 H -0.218 1.218 26 H -0.219 1.219 27 H -0.182 1.182 28 C -0.146 4.146 29 H 0.123 0.877 30 C 0.010 3.990 31 C -0.145 4.145 32 H 0.103 0.897 33 H 0.086 0.914 34 H 0.091 0.909 35 H 0.155 0.845 36 H 0.103 0.897 37 H 0.093 0.907 38 H 0.081 0.919 39 H 0.138 0.862 40 H 0.152 0.848 41 H 0.142 0.858 42 H 0.126 0.874 43 H 0.125 0.875 44 H 0.097 0.903 45 H 0.117 0.883 46 H 0.066 0.934 47 H 0.091 0.909 48 H 0.194 0.806 49 H 0.065 0.935 50 H 0.054 0.946 51 H 0.079 0.921 52 H 0.147 0.853 Dipole moment (debyes) X Y Z Total from point charges -18.229 7.437 -25.206 31.983 hybrid contribution 0.907 1.086 0.968 1.714 sum -17.323 8.523 -24.238 30.987 Atomic orbital electron populations 1.20811 0.89409 1.03268 1.03235 1.20229 0.97489 0.92935 0.98760 1.21166 0.93552 0.98338 1.02168 1.20194 0.94460 0.95924 0.98998 1.20813 0.99666 0.93223 1.03164 1.21061 0.99884 0.92208 1.02051 1.19493 0.94018 0.94140 0.99531 1.20695 1.03622 0.96148 0.92032 1.20954 0.76517 0.78929 0.92373 1.90720 1.53102 1.54639 1.48378 1.49981 1.55935 1.22189 1.07944 1.22126 0.95231 0.92238 0.90327 1.22681 0.96894 0.98369 0.95680 0.92034 1.21780 1.01459 0.92867 0.95868 1.23643 0.99815 0.99761 0.94889 1.20326 0.88421 0.90599 0.92747 0.93010 1.42820 1.52188 1.14438 1.29490 1.19082 1.16744 0.98811 1.00336 0.91859 1.25339 1.00138 1.01606 0.98165 1.69850 1.33827 1.37032 1.22662 0.85611 0.76713 0.81548 0.79073 1.21779 1.21945 1.18171 1.21949 0.98848 0.95579 0.98249 0.87728 1.20708 0.98817 0.94493 0.84959 1.21068 0.93447 0.98412 1.01601 0.89714 0.91398 0.90874 0.84534 0.89746 0.90716 0.91935 0.86219 0.84832 0.85809 0.87409 0.87507 0.90289 0.88308 0.93437 0.90926 0.80608 0.93485 0.94647 0.92114 0.85293 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.51 10.01 71.23 0.71 -0.79 16 2 C -0.09 -1.87 5.88 -19.87 -0.12 -1.98 16 3 C -0.13 -2.66 9.36 22.27 0.21 -2.45 16 4 C -0.10 -2.03 5.88 -19.87 -0.12 -2.15 16 5 C -0.11 -1.78 10.01 71.24 0.71 -1.07 16 6 C -0.13 -3.10 9.36 22.27 0.21 -2.89 16 7 C -0.07 -1.60 4.37 -19.86 -0.09 -1.68 16 8 C -0.09 -1.53 4.88 29.10 0.14 -1.39 16 9 C 0.52 14.49 7.87 87.66 0.69 15.18 16 10 O -0.59 -22.77 16.40 -3.01 -0.05 -22.82 16 11 N -0.63 -15.82 3.42 -814.68 -2.79 -18.61 16 12 C 0.12 1.90 6.48 85.36 0.55 2.46 16 13 C -0.12 -2.55 3.09 -9.96 -0.03 -2.58 16 14 H 0.06 1.71 7.87 -2.39 -0.02 1.70 16 15 C -0.08 -1.53 6.59 31.29 0.21 -1.32 16 16 C -0.14 -4.01 6.74 32.79 0.22 -3.79 16 17 C 0.19 6.55 3.47 44.98 0.16 6.71 16 18 H 0.05 1.93 8.09 -2.39 -0.02 1.91 16 19 N -0.75 -34.23 4.66 -323.04 -1.50 -35.73 16 20 C -0.22 -12.38 10.44 84.03 0.88 -11.51 16 21 H 0.06 3.89 8.06 -2.91 -0.02 3.86 16 22 C -0.06 -3.66 5.50 84.86 0.47 -3.20 16 23 N -0.98 -63.90 13.97 21.65 0.30 -63.60 16 24 Si 0.94 47.68 27.74 68.60 1.90 49.58 16 25 H -0.29 -14.97 7.11 99.48 0.71 -14.26 16 26 H -0.29 -14.85 7.11 99.48 0.71 -14.14 16 27 H -0.26 -11.85 6.52 99.48 0.65 -11.21 16 28 C -0.13 -3.45 2.29 -11.19 -0.03 -3.48 16 29 H 0.10 2.27 7.93 -2.39 -0.02 2.25 16 30 C 0.13 4.22 6.67 84.78 0.57 4.78 16 31 C -0.13 -2.71 9.36 22.27 0.21 -2.50 16 32 H 0.08 0.88 8.14 -2.39 -0.02 0.86 16 33 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 34 H 0.07 0.87 8.09 -2.39 -0.02 0.85 16 35 H 0.14 2.06 8.06 -2.91 -0.02 2.04 16 36 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 37 H 0.07 1.03 8.08 -2.39 -0.02 1.01 16 38 H 0.06 1.03 8.09 -2.38 -0.02 1.01 16 39 H 0.12 2.57 8.06 -2.91 -0.02 2.55 16 40 H 0.13 1.49 8.09 -2.39 -0.02 1.47 16 41 H 0.12 1.63 7.86 -2.39 -0.02 1.62 16 42 H 0.11 1.10 8.14 -2.39 -0.02 1.08 16 43 H 0.11 1.12 7.58 -2.39 -0.02 1.10 16 44 H 0.08 1.31 8.14 -2.39 -0.02 1.29 16 45 H 0.10 1.27 8.14 -2.39 -0.02 1.26 16 46 H 0.05 1.64 7.98 -2.38 -0.02 1.62 16 47 H 0.07 1.86 8.14 -2.39 -0.02 1.84 16 48 H 0.36 16.57 4.58 -92.70 -0.42 16.14 16 49 H 0.26 15.98 8.31 -92.71 -0.77 15.21 16 50 H 0.04 1.39 7.22 -2.39 -0.02 1.37 16 51 H 0.06 2.02 8.14 -2.38 -0.02 2.00 16 52 H 0.13 2.31 8.06 -2.91 -0.02 2.28 16 Total: -1.00 -80.06 412.23 3.83 -76.23 By element: Atomic # 1 Polarization: 28.19 SS G_CDS: 0.41 Total: 28.60 kcal Atomic # 6 Polarization: -19.20 SS G_CDS: 5.55 Total: -13.65 kcal Atomic # 7 Polarization: -113.96 SS G_CDS: -3.99 Total: -117.95 kcal Atomic # 8 Polarization: -22.77 SS G_CDS: -0.05 Total: -22.82 kcal Atomic # 14 Polarization: 47.68 SS G_CDS: 1.90 Total: 49.58 kcal Total: -80.06 3.83 -76.23 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026349151.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.268 kcal (2) G-P(sol) polarization free energy of solvation -80.056 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -14.788 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.826 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.230 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.962 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds