Wall clock time and date at job start Wed Apr 1 2020 02:03:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38239 * 119.99824 * 2 1 4 4 C 1.38237 * 119.99658 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99692 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.00130 * 359.97438 * 4 3 2 7 7 C 1.38239 * 120.00212 * 0.02562 * 6 4 3 8 8 C 1.50697 * 119.99720 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.47605 * 89.99865 * 8 7 6 10 10 O 1.21280 * 119.99752 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00277 * 179.97438 * 9 8 7 12 12 C 1.47214 * 126.70434 * 359.97438 * 11 9 8 13 13 C 1.53776 * 106.38555 * 148.73808 * 12 11 9 14 14 H 1.09005 * 112.38098 * 256.84700 * 13 12 11 15 15 C 1.54316 * 109.06637 * 132.42858 * 13 12 11 16 16 C 1.55057 * 103.93566 * 222.03199 * 15 13 12 17 17 C 1.55059 * 102.14033 * 40.03914 * 16 15 13 18 18 H 1.08995 * 110.53438 * 78.57226 * 17 16 15 19 19 N 1.46498 * 110.53189 * 201.34923 * 17 16 15 20 20 C 1.36940 * 119.99890 * 273.54207 * 19 17 16 21 21 H 1.08001 * 119.99813 * 0.02562 * 20 19 17 22 22 C 1.38816 * 119.99895 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00001 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99784 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47500 * 59.99703 * 24 22 20 26 26 H 1.48500 * 109.47032 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47396 * 299.99912 * 24 22 20 28 28 C 1.54357 * 103.91999 * 319.99071 * 17 16 15 29 29 H 1.08997 * 112.32536 * 262.35125 * 28 17 16 30 30 C 1.47215 * 126.70425 * 179.97438 * 11 9 8 31 31 C 1.38230 * 119.99596 * 0.24992 * 7 6 4 32 32 H 1.08999 * 109.46916 * 90.00663 * 1 2 3 33 33 H 1.09008 * 109.46797 * 209.99997 * 1 2 3 34 34 H 1.08998 * 109.47155 * 329.99777 * 1 2 3 35 35 H 1.07996 * 119.99737 * 0.02562 * 3 2 1 36 36 H 1.08998 * 109.47118 * 270.02045 * 5 4 3 37 37 H 1.09005 * 109.46773 * 30.02420 * 5 4 3 38 38 H 1.08995 * 109.47007 * 150.01611 * 5 4 3 39 39 H 1.08005 * 119.99932 * 179.97438 * 6 4 3 40 40 H 1.08998 * 109.47360 * 329.99429 * 8 7 6 41 41 H 1.09004 * 109.46840 * 209.99554 * 8 7 6 42 42 H 1.09000 * 110.07371 * 29.50089 * 12 11 9 43 43 H 1.09002 * 110.07218 * 267.97052 * 12 11 9 44 44 H 1.08998 * 110.54122 * 103.42100 * 15 13 12 45 45 H 1.09000 * 110.53334 * 340.64019 * 15 13 12 46 46 H 1.09002 * 110.90625 * 158.26001 * 16 15 13 47 47 H 1.09003 * 110.90495 * 281.81925 * 16 15 13 48 48 H 0.96996 * 119.99926 * 93.55126 * 19 17 16 49 49 H 0.96998 * 119.99941 * 180.02562 * 23 22 20 50 50 H 1.08997 * 110.07200 * 92.03554 * 30 11 9 51 51 H 1.09000 * 110.12084 * 330.52171 * 30 11 9 52 52 H 1.08008 * 119.99559 * 179.72468 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2717 0.0001 -0.0005 7 6 3.5805 -1.1971 -0.0005 8 6 4.3341 -2.5022 -0.0011 9 6 4.5859 -2.9376 1.4195 10 8 4.1926 -2.2551 2.3416 11 7 5.2482 -4.0853 1.6652 12 6 5.7872 -5.0216 0.6651 13 6 7.0380 -5.6566 1.2952 14 1 7.9619 -5.2335 0.9007 15 6 6.9810 -7.1860 1.0972 16 6 7.4540 -7.7567 2.4591 17 6 6.7634 -6.8044 3.4693 18 1 5.7132 -7.0705 3.5890 19 7 7.4538 -6.8374 4.7610 20 6 7.1212 -7.7860 5.6910 21 1 6.3503 -8.5099 5.4721 22 6 7.7751 -7.8169 6.9152 23 7 8.7142 -6.9343 7.1821 24 14 7.3219 -9.1112 8.1835 25 1 7.5573 -10.4635 7.6168 26 1 8.1598 -8.9305 9.3962 27 1 5.8888 -8.9689 8.5458 28 6 6.8978 -5.4115 2.8180 29 1 7.7414 -4.8478 3.2163 30 6 5.5739 -4.6478 2.9861 31 6 2.1982 -1.1971 -0.0058 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3633 -0.8901 0.5139 34 1 -0.3633 0.8899 0.5139 35 1 1.6581 2.1324 0.0004 36 1 4.5149 2.8169 -1.0289 37 1 3.7452 3.2619 0.5132 38 1 5.2867 2.3720 0.5121 39 1 5.3517 0.0001 -0.0014 40 1 5.2863 -2.3717 -0.5154 41 1 3.7448 -3.2618 -0.5149 42 1 6.0580 -4.4835 -0.2434 43 1 5.0502 -5.7920 0.4384 44 1 7.6560 -7.4936 0.2986 45 1 5.9614 -7.5059 0.8819 46 1 7.1084 -8.7819 2.5923 47 1 8.5387 -7.6991 2.5493 48 1 8.1463 -6.1874 4.9575 49 1 9.1714 -6.9561 8.0374 50 1 4.7867 -5.3302 3.3065 51 1 5.6940 -3.8467 3.7154 52 1 1.6582 -2.1325 -0.0103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026349152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:25 Heat of formation + Delta-G solvation = -14.927686 kcal Electronic energy + Delta-G solvation = -29385.973698 eV Core-core repulsion = 25542.361567 eV Total energy + Delta-G solvation = -3843.612131 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.12 seconds Orbital eigenvalues (eV) -40.50549 -39.69028 -38.29067 -35.18335 -33.68983 -33.67680 -33.35975 -31.03704 -30.02316 -28.50565 -28.20050 -27.13059 -26.86634 -25.06951 -23.59616 -22.87153 -21.20270 -20.91101 -20.20000 -19.18899 -18.85949 -17.31151 -16.95359 -16.47938 -16.21985 -15.75485 -15.45489 -15.08792 -14.52005 -14.24748 -14.21005 -14.11610 -13.71385 -13.43745 -13.26361 -13.16286 -13.09825 -13.03122 -12.82643 -12.75160 -12.42098 -12.33799 -11.97662 -11.80151 -11.67646 -11.61063 -11.22861 -11.14272 -11.11195 -10.87962 -10.77148 -10.70236 -10.39012 -10.30324 -10.24020 -9.96749 -9.77147 -9.64979 -8.87789 -8.73245 -8.66900 -8.59588 -6.95334 -5.77032 -3.05895 1.19396 1.25249 2.67266 3.02218 3.44022 3.48692 3.49501 3.61283 4.41914 4.48618 4.55232 4.57441 4.60834 4.61970 4.84783 4.93422 4.96353 5.04738 5.09003 5.14707 5.25461 5.31445 5.33446 5.36563 5.40024 5.41662 5.43512 5.45517 5.56380 5.60696 5.63750 5.65458 5.77548 5.86185 5.92878 5.97662 5.98481 6.03094 6.05725 6.20349 6.25085 6.33106 6.38629 6.38952 6.43613 6.48979 6.54244 6.64623 6.78162 6.89112 7.03414 7.61887 7.69533 8.22410 8.41497 9.52565 10.09924 10.43958 11.45454 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015946 B = 0.002118 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.501218 B =13213.743382 C =13745.116531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.083 4.083 3 C -0.123 4.123 4 C -0.083 4.083 5 C -0.113 4.113 6 C -0.110 4.110 7 C -0.056 4.056 8 C -0.098 4.098 9 C 0.529 3.471 10 O -0.532 6.532 11 N -0.619 5.619 12 C 0.105 3.895 13 C -0.100 4.100 14 H 0.086 0.914 15 C -0.117 4.117 16 C -0.143 4.143 17 C 0.185 3.815 18 H 0.055 0.945 19 N -0.721 5.721 20 C -0.240 4.240 21 H 0.069 0.931 22 C -0.013 4.013 23 N -0.932 5.932 24 Si 0.906 3.094 25 H -0.286 1.286 26 H -0.291 1.291 27 H -0.286 1.286 28 C -0.105 4.105 29 H 0.089 0.911 30 C 0.115 3.885 31 C -0.110 4.110 32 H 0.068 0.932 33 H 0.066 0.934 34 H 0.065 0.935 35 H 0.119 0.881 36 H 0.068 0.932 37 H 0.065 0.935 38 H 0.066 0.934 39 H 0.119 0.881 40 H 0.101 0.899 41 H 0.101 0.899 42 H 0.071 0.929 43 H 0.071 0.929 44 H 0.059 0.941 45 H 0.064 0.936 46 H 0.060 0.940 47 H 0.066 0.934 48 H 0.384 0.616 49 H 0.256 0.744 50 H 0.071 0.929 51 H 0.077 0.923 52 H 0.118 0.882 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.478 12.803 -22.304 27.769 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C -0.083 4.083 3 C -0.141 4.141 4 C -0.083 4.083 5 C -0.170 4.170 6 C -0.128 4.128 7 C -0.056 4.056 8 C -0.137 4.137 9 C 0.317 3.683 10 O -0.408 6.408 11 N -0.353 5.353 12 C -0.018 4.018 13 C -0.120 4.120 14 H 0.104 0.896 15 C -0.155 4.155 16 C -0.184 4.184 17 C 0.074 3.926 18 H 0.073 0.927 19 N -0.361 5.361 20 C -0.371 4.371 21 H 0.087 0.913 22 C -0.209 4.209 23 N -0.580 5.580 24 Si 0.737 3.263 25 H -0.213 1.213 26 H -0.217 1.217 27 H -0.213 1.213 28 C -0.125 4.125 29 H 0.107 0.893 30 C -0.007 4.007 31 C -0.128 4.128 32 H 0.087 0.913 33 H 0.085 0.915 34 H 0.084 0.916 35 H 0.137 0.863 36 H 0.087 0.913 37 H 0.084 0.916 38 H 0.085 0.915 39 H 0.137 0.863 40 H 0.119 0.881 41 H 0.119 0.881 42 H 0.090 0.910 43 H 0.089 0.911 44 H 0.078 0.922 45 H 0.083 0.917 46 H 0.078 0.922 47 H 0.085 0.915 48 H 0.218 0.782 49 H 0.066 0.934 50 H 0.089 0.911 51 H 0.096 0.904 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -10.826 13.143 -21.671 27.560 hybrid contribution 0.177 -0.671 0.840 1.090 sum -10.648 12.472 -20.831 26.512 Atomic orbital electron populations 1.20778 0.91246 1.02854 1.02105 1.19830 0.95951 0.93022 0.99527 1.20863 0.93494 0.97413 1.02306 1.19832 0.93814 0.95168 0.99485 1.20780 1.00041 0.94068 1.02116 1.20820 0.99491 0.91443 1.01050 1.19237 0.93509 0.93517 0.99386 1.20651 1.02036 0.96086 0.94962 1.20113 0.77698 0.79374 0.91105 1.90746 1.50680 1.53047 1.46346 1.48692 1.56005 1.21640 1.08999 1.22316 0.95474 0.92323 0.91698 1.22563 0.97044 0.96632 0.95753 0.89589 1.22503 1.00969 0.93351 0.98670 1.23302 1.01199 0.99972 0.93886 1.21231 0.95571 0.89805 0.86008 0.92680 1.42425 1.44143 1.37537 1.11965 1.19176 1.16144 1.07476 0.94329 0.91254 1.24742 0.98953 0.99138 0.98033 1.69646 1.27306 1.37265 1.23831 0.86284 0.77608 0.81220 0.81163 1.21295 1.21720 1.21262 1.22888 0.96980 0.98291 0.94350 0.89302 1.22174 0.96482 0.97624 0.84432 1.20812 0.93317 0.97584 1.01135 0.91295 0.91509 0.91607 0.86330 0.91286 0.91605 0.91480 0.86347 0.88093 0.88111 0.91038 0.91062 0.92175 0.91699 0.92164 0.91524 0.78176 0.93444 0.91114 0.90418 0.86367 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -0.87 10.01 36.01 0.36 -0.51 16 2 C -0.08 -0.86 5.88 -104.62 -0.62 -1.48 16 3 C -0.12 -1.24 9.36 -39.58 -0.37 -1.61 16 4 C -0.08 -0.87 5.88 -104.63 -0.62 -1.48 16 5 C -0.11 -0.89 10.01 36.01 0.36 -0.52 16 6 C -0.11 -1.24 9.36 -39.58 -0.37 -1.61 16 7 C -0.06 -0.65 4.37 -104.63 -0.46 -1.10 16 8 C -0.10 -0.98 4.81 -29.04 -0.14 -1.12 16 9 C 0.53 7.55 7.87 -10.99 -0.09 7.46 16 10 O -0.53 -9.97 16.27 5.56 0.09 -9.88 16 11 N -0.62 -8.38 3.32 -171.60 -0.57 -8.95 16 12 C 0.11 1.08 6.38 -3.25 -0.02 1.06 16 13 C -0.10 -1.20 3.91 -88.54 -0.35 -1.55 16 14 H 0.09 0.96 8.14 -51.93 -0.42 0.53 16 15 C -0.12 -1.40 6.35 -24.95 -0.16 -1.56 16 16 C -0.14 -2.34 6.60 -24.56 -0.16 -2.50 16 17 C 0.18 3.46 3.02 -66.13 -0.20 3.26 16 18 H 0.06 1.07 7.16 -51.93 -0.37 0.70 16 19 N -0.72 -17.54 5.23 -51.69 -0.27 -17.81 16 20 C -0.24 -6.55 9.98 -15.06 -0.15 -6.70 16 21 H 0.07 1.84 7.83 -52.49 -0.41 1.42 16 22 C -0.01 -0.36 5.50 -17.43 -0.10 -0.45 16 23 N -0.93 -28.03 13.06 55.49 0.72 -27.31 16 24 Si 0.91 22.35 29.55 -169.99 -5.02 17.33 16 25 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 26 H -0.29 -7.27 7.11 56.52 0.40 -6.86 16 27 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 28 C -0.10 -1.65 3.58 -88.52 -0.32 -1.97 16 29 H 0.09 1.52 7.82 -51.93 -0.41 1.11 16 30 C 0.11 1.84 6.54 -3.26 -0.02 1.82 16 31 C -0.11 -1.23 9.36 -39.59 -0.37 -1.61 16 32 H 0.07 0.44 8.14 -51.93 -0.42 0.01 16 33 H 0.07 0.50 8.09 -51.92 -0.42 0.08 16 34 H 0.06 0.45 8.09 -51.93 -0.42 0.03 16 35 H 0.12 0.95 8.06 -52.49 -0.42 0.53 16 36 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 37 H 0.06 0.46 8.09 -51.93 -0.42 0.04 16 38 H 0.07 0.51 8.08 -51.93 -0.42 0.09 16 39 H 0.12 1.19 8.06 -52.48 -0.42 0.77 16 40 H 0.10 0.80 7.80 -51.93 -0.41 0.40 16 41 H 0.10 0.79 8.08 -51.93 -0.42 0.37 16 42 H 0.07 0.56 7.31 -51.93 -0.38 0.18 16 43 H 0.07 0.67 7.13 -51.93 -0.37 0.30 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.71 7.19 -51.93 -0.37 0.34 16 46 H 0.06 1.02 8.14 -51.93 -0.42 0.59 16 47 H 0.07 1.18 8.14 -51.93 -0.42 0.76 16 48 H 0.38 10.01 7.59 -40.82 -0.31 9.70 16 49 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 50 H 0.07 1.18 7.13 -51.93 -0.37 0.81 16 51 H 0.08 1.41 7.92 -51.93 -0.41 1.00 16 52 H 0.12 1.17 8.06 -52.48 -0.42 0.74 16 LS Contribution 414.15 15.07 6.24 6.24 Total: -1.00 -33.18 414.15 -11.43 -44.61 By element: Atomic # 1 Polarization: 16.79 SS G_CDS: -8.85 Total: 7.94 kcal Atomic # 6 Polarization: -8.40 SS G_CDS: -3.78 Total: -12.17 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.12 Total: -54.07 kcal Atomic # 8 Polarization: -9.97 SS G_CDS: 0.09 Total: -9.88 kcal Atomic # 14 Polarization: 22.35 SS G_CDS: -5.02 Total: 17.33 kcal Total LS contribution 6.24 Total: 6.24 kcal Total: -33.18 -11.43 -44.61 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026349152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 29.682 kcal (2) G-P(sol) polarization free energy of solvation -33.179 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -3.497 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.431 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -14.928 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.12 seconds