Wall clock time and date at job start Wed Apr 1 2020 02:03:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50701 * 1 3 3 C 1.38239 * 119.99824 * 2 1 4 4 C 1.38237 * 119.99658 * 180.02562 * 3 2 1 5 5 C 1.50701 * 119.99692 * 179.97438 * 4 3 2 6 6 C 1.38229 * 120.00130 * 359.97438 * 4 3 2 7 7 C 1.38239 * 120.00212 * 0.02562 * 6 4 3 8 8 C 1.50697 * 119.99720 * 179.97438 * 7 6 4 9 9 C 1.50699 * 109.47605 * 89.99865 * 8 7 6 10 10 O 1.21280 * 119.99752 * 359.97438 * 9 8 7 11 11 N 1.34770 * 120.00277 * 179.97438 * 9 8 7 12 12 C 1.47214 * 126.70434 * 359.97438 * 11 9 8 13 13 C 1.53776 * 106.38555 * 148.73808 * 12 11 9 14 14 H 1.09005 * 112.38098 * 256.84700 * 13 12 11 15 15 C 1.54316 * 109.06637 * 132.42858 * 13 12 11 16 16 C 1.55057 * 103.93566 * 222.03199 * 15 13 12 17 17 C 1.55059 * 102.14033 * 40.03914 * 16 15 13 18 18 H 1.08995 * 110.53438 * 78.57226 * 17 16 15 19 19 N 1.46498 * 110.53189 * 201.34923 * 17 16 15 20 20 C 1.36940 * 119.99890 * 273.54207 * 19 17 16 21 21 H 1.08001 * 119.99813 * 0.02562 * 20 19 17 22 22 C 1.38816 * 119.99895 * 180.02562 * 20 19 17 23 23 N 1.31620 * 120.00001 * 0.02562 * 22 20 19 24 24 Si 1.86794 * 119.99784 * 180.02562 * 22 20 19 25 25 H 1.48502 * 109.47500 * 59.99703 * 24 22 20 26 26 H 1.48500 * 109.47032 * 179.97438 * 24 22 20 27 27 H 1.48501 * 109.47396 * 299.99912 * 24 22 20 28 28 C 1.54357 * 103.91999 * 319.99071 * 17 16 15 29 29 H 1.08997 * 112.32536 * 262.35125 * 28 17 16 30 30 C 1.47215 * 126.70425 * 179.97438 * 11 9 8 31 31 C 1.38230 * 119.99596 * 0.24992 * 7 6 4 32 32 H 1.08999 * 109.46916 * 90.00663 * 1 2 3 33 33 H 1.09008 * 109.46797 * 209.99997 * 1 2 3 34 34 H 1.08998 * 109.47155 * 329.99777 * 1 2 3 35 35 H 1.07996 * 119.99737 * 0.02562 * 3 2 1 36 36 H 1.08998 * 109.47118 * 270.02045 * 5 4 3 37 37 H 1.09005 * 109.46773 * 30.02420 * 5 4 3 38 38 H 1.08995 * 109.47007 * 150.01611 * 5 4 3 39 39 H 1.08005 * 119.99932 * 179.97438 * 6 4 3 40 40 H 1.08998 * 109.47360 * 329.99429 * 8 7 6 41 41 H 1.09004 * 109.46840 * 209.99554 * 8 7 6 42 42 H 1.09000 * 110.07371 * 29.50089 * 12 11 9 43 43 H 1.09002 * 110.07218 * 267.97052 * 12 11 9 44 44 H 1.08998 * 110.54122 * 103.42100 * 15 13 12 45 45 H 1.09000 * 110.53334 * 340.64019 * 15 13 12 46 46 H 1.09002 * 110.90625 * 158.26001 * 16 15 13 47 47 H 1.09003 * 110.90495 * 281.81925 * 16 15 13 48 48 H 0.96996 * 119.99926 * 93.55126 * 19 17 16 49 49 H 0.96998 * 119.99941 * 180.02562 * 23 22 20 50 50 H 1.08997 * 110.07200 * 92.03554 * 30 11 9 51 51 H 1.09000 * 110.12084 * 330.52171 * 30 11 9 52 52 H 1.08008 * 119.99559 * 179.72468 * 31 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 6 2.1982 1.1972 0.0000 4 6 3.5805 1.1972 -0.0005 5 6 4.3340 2.5023 -0.0011 6 6 4.2717 0.0001 -0.0005 7 6 3.5805 -1.1971 -0.0005 8 6 4.3341 -2.5022 -0.0011 9 6 4.5859 -2.9376 1.4195 10 8 4.1926 -2.2551 2.3416 11 7 5.2482 -4.0853 1.6652 12 6 5.7872 -5.0216 0.6651 13 6 7.0380 -5.6566 1.2952 14 1 7.9619 -5.2335 0.9007 15 6 6.9810 -7.1860 1.0972 16 6 7.4540 -7.7567 2.4591 17 6 6.7634 -6.8044 3.4693 18 1 5.7132 -7.0705 3.5890 19 7 7.4538 -6.8374 4.7610 20 6 7.1212 -7.7860 5.6910 21 1 6.3503 -8.5099 5.4721 22 6 7.7751 -7.8169 6.9152 23 7 8.7142 -6.9343 7.1821 24 14 7.3219 -9.1112 8.1835 25 1 7.5573 -10.4635 7.6168 26 1 8.1598 -8.9305 9.3962 27 1 5.8888 -8.9689 8.5458 28 6 6.8978 -5.4115 2.8180 29 1 7.7414 -4.8478 3.2163 30 6 5.5739 -4.6478 2.9861 31 6 2.1982 -1.1971 -0.0058 32 1 -0.3633 -0.0001 -1.0277 33 1 -0.3633 -0.8901 0.5139 34 1 -0.3633 0.8899 0.5139 35 1 1.6581 2.1324 0.0004 36 1 4.5149 2.8169 -1.0289 37 1 3.7452 3.2619 0.5132 38 1 5.2867 2.3720 0.5121 39 1 5.3517 0.0001 -0.0014 40 1 5.2863 -2.3717 -0.5154 41 1 3.7448 -3.2618 -0.5149 42 1 6.0580 -4.4835 -0.2434 43 1 5.0502 -5.7920 0.4384 44 1 7.6560 -7.4936 0.2986 45 1 5.9614 -7.5059 0.8819 46 1 7.1084 -8.7819 2.5923 47 1 8.5387 -7.6991 2.5493 48 1 8.1463 -6.1874 4.9575 49 1 9.1714 -6.9561 8.0374 50 1 4.7867 -5.3302 3.3065 51 1 5.6940 -3.8467 3.7154 52 1 1.6582 -2.1325 -0.0103 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026349152.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:03:24 Heat of formation + Delta-G solvation = -33.160301 kcal Electronic energy + Delta-G solvation = -29386.764323 eV Core-core repulsion = 25542.361567 eV Total energy + Delta-G solvation = -3844.402756 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -41.58473 -40.57017 -39.43520 -36.67547 -35.02864 -34.47443 -34.37520 -32.73686 -31.24773 -29.85504 -29.05233 -27.88675 -27.56281 -26.65841 -24.75382 -24.53727 -22.07738 -21.62857 -21.49398 -20.43943 -19.93256 -19.08068 -18.22146 -17.27790 -17.25030 -16.92628 -16.55632 -16.34609 -15.90810 -15.56928 -15.23111 -15.05874 -14.83488 -14.75133 -14.51452 -14.00466 -13.97532 -13.86893 -13.80194 -13.68537 -13.35484 -13.27851 -13.21982 -13.07599 -12.90299 -12.58560 -12.55153 -12.37781 -12.34563 -12.12087 -11.95636 -11.89607 -11.85510 -11.68958 -11.54966 -11.47811 -11.37390 -10.97520 -10.81598 -9.73051 -9.51586 -9.41998 -8.97172 -7.94349 -5.22082 0.40518 0.48168 1.45568 1.48480 1.54332 1.60264 1.98954 2.55812 2.81871 3.34005 3.43919 3.53862 3.65473 3.73935 3.85970 3.94124 3.98791 4.07709 4.21935 4.23363 4.33296 4.39514 4.42653 4.49873 4.50610 4.52924 4.59102 4.62552 4.65041 4.67033 4.69806 4.77046 4.80505 4.84382 4.86876 4.96850 4.99644 5.06306 5.07957 5.09765 5.20408 5.27657 5.30408 5.36219 5.41093 5.48006 5.53278 5.61709 5.63512 5.64835 5.72676 6.15584 6.28198 6.57749 7.13977 7.33637 8.11593 8.32992 9.29130 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015946 B = 0.002118 C = 0.002037 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1755.501218 B =13213.743382 C =13745.116531 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C -0.095 4.095 3 C -0.135 4.135 4 C -0.095 4.095 5 C -0.112 4.112 6 C -0.131 4.131 7 C -0.072 4.072 8 C -0.086 4.086 9 C 0.524 3.476 10 O -0.588 6.588 11 N -0.617 5.617 12 C 0.105 3.895 13 C -0.091 4.091 14 H 0.103 0.897 15 C -0.101 4.101 16 C -0.139 4.139 17 C 0.175 3.825 18 H 0.048 0.952 19 N -0.736 5.736 20 C -0.236 4.236 21 H 0.075 0.925 22 C -0.079 4.079 23 N -0.971 5.971 24 Si 0.970 3.030 25 H -0.276 1.276 26 H -0.297 1.297 27 H -0.281 1.281 28 C -0.100 4.100 29 H 0.068 0.932 30 C 0.119 3.881 31 C -0.130 4.130 32 H 0.084 0.916 33 H 0.065 0.935 34 H 0.073 0.927 35 H 0.136 0.864 36 H 0.084 0.916 37 H 0.073 0.927 38 H 0.064 0.936 39 H 0.124 0.876 40 H 0.129 0.871 41 H 0.130 0.870 42 H 0.112 0.888 43 H 0.092 0.908 44 H 0.088 0.912 45 H 0.083 0.917 46 H 0.052 0.948 47 H 0.049 0.951 48 H 0.371 0.629 49 H 0.250 0.750 50 H 0.060 0.940 51 H 0.043 0.957 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.476 12.361 -25.732 30.767 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.168 4.168 2 C -0.095 4.095 3 C -0.153 4.153 4 C -0.095 4.095 5 C -0.168 4.168 6 C -0.149 4.149 7 C -0.073 4.073 8 C -0.125 4.125 9 C 0.315 3.685 10 O -0.468 6.468 11 N -0.350 5.350 12 C -0.017 4.017 13 C -0.110 4.110 14 H 0.122 0.878 15 C -0.139 4.139 16 C -0.179 4.179 17 C 0.066 3.934 18 H 0.066 0.934 19 N -0.375 5.375 20 C -0.368 4.368 21 H 0.093 0.907 22 C -0.271 4.271 23 N -0.622 5.622 24 Si 0.799 3.201 25 H -0.202 1.202 26 H -0.224 1.224 27 H -0.207 1.207 28 C -0.120 4.120 29 H 0.087 0.913 30 C -0.004 4.004 31 C -0.148 4.148 32 H 0.102 0.898 33 H 0.084 0.916 34 H 0.092 0.908 35 H 0.154 0.846 36 H 0.102 0.898 37 H 0.092 0.908 38 H 0.083 0.917 39 H 0.142 0.858 40 H 0.147 0.853 41 H 0.148 0.852 42 H 0.130 0.870 43 H 0.110 0.890 44 H 0.107 0.893 45 H 0.102 0.898 46 H 0.071 0.929 47 H 0.068 0.932 48 H 0.203 0.797 49 H 0.058 0.942 50 H 0.079 0.921 51 H 0.061 0.939 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -11.848 12.664 -25.183 30.577 hybrid contribution 0.438 -0.493 1.890 2.002 sum -11.409 12.171 -23.293 28.651 Atomic orbital electron populations 1.20813 0.89578 1.03201 1.03192 1.20213 0.97405 0.92994 0.98864 1.21168 0.93692 0.98221 1.02186 1.20204 0.94354 0.96035 0.98903 1.20813 0.99725 0.93097 1.03182 1.21063 1.00020 0.91969 1.01804 1.19494 0.93923 0.94267 0.99590 1.20692 1.03796 0.96074 0.91921 1.20958 0.76509 0.78626 0.92423 1.90721 1.52960 1.54714 1.48425 1.48753 1.55709 1.22001 1.08495 1.22578 0.94769 0.92525 0.91800 1.22586 0.98999 0.97184 0.92269 0.87843 1.22455 1.02578 0.92505 0.96334 1.23124 0.99819 0.99014 0.95991 1.21511 0.94764 0.92567 0.84565 0.93424 1.42646 1.44316 1.36731 1.13806 1.19568 1.15144 1.07340 0.94746 0.90702 1.25543 0.99656 1.01586 1.00274 1.69810 1.28980 1.39402 1.24001 0.85257 0.77201 0.79167 0.78444 1.20167 1.22382 1.20682 1.22706 0.95924 0.96002 0.97395 0.91331 1.21899 0.96462 0.96380 0.85657 1.21065 0.93618 0.98328 1.01752 0.89752 0.91575 0.90841 0.84579 0.89753 0.90815 0.91675 0.85786 0.85283 0.85167 0.86961 0.89034 0.89300 0.89835 0.92892 0.93211 0.79732 0.94168 0.92147 0.93865 0.85602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.56 10.01 71.24 0.71 -0.85 16 2 C -0.09 -1.88 5.88 -19.86 -0.12 -2.00 16 3 C -0.13 -2.60 9.36 22.27 0.21 -2.40 16 4 C -0.09 -1.91 5.88 -19.87 -0.12 -2.03 16 5 C -0.11 -1.62 10.01 71.24 0.71 -0.90 16 6 C -0.13 -2.85 9.36 22.27 0.21 -2.64 16 7 C -0.07 -1.58 4.37 -19.87 -0.09 -1.66 16 8 C -0.09 -1.48 4.81 29.10 0.14 -1.34 16 9 C 0.52 14.39 7.87 87.66 0.69 15.08 16 10 O -0.59 -22.61 16.27 -3.03 -0.05 -22.66 16 11 N -0.62 -15.70 3.32 -815.21 -2.71 -18.41 16 12 C 0.10 1.70 6.38 86.50 0.55 2.25 16 13 C -0.09 -1.88 3.91 -9.44 -0.04 -1.92 16 14 H 0.10 1.87 8.14 -2.38 -0.02 1.85 16 15 C -0.10 -2.02 6.35 31.75 0.20 -1.82 16 16 C -0.14 -4.40 6.60 32.00 0.21 -4.18 16 17 C 0.17 6.61 3.02 46.16 0.14 6.75 16 18 H 0.05 1.87 7.16 -2.39 -0.02 1.85 16 19 N -0.74 -37.12 5.23 -317.44 -1.66 -38.78 16 20 C -0.24 -13.16 9.98 84.03 0.84 -12.32 16 21 H 0.08 4.00 7.83 -2.91 -0.02 3.97 16 22 C -0.08 -4.58 5.50 84.86 0.47 -4.11 16 23 N -0.97 -60.48 13.06 21.65 0.28 -60.19 16 24 Si 0.97 46.85 29.55 68.60 2.03 48.88 16 25 H -0.28 -12.70 7.11 99.48 0.71 -11.99 16 26 H -0.30 -14.54 7.11 99.48 0.71 -13.84 16 27 H -0.28 -13.14 7.11 99.48 0.71 -12.44 16 28 C -0.10 -3.15 3.58 -9.44 -0.03 -3.19 16 29 H 0.07 2.44 7.82 -2.39 -0.02 2.43 16 30 C 0.12 3.93 6.54 86.50 0.57 4.49 16 31 C -0.13 -2.78 9.36 22.27 0.21 -2.57 16 32 H 0.08 0.91 8.14 -2.39 -0.02 0.89 16 33 H 0.07 0.92 8.09 -2.38 -0.02 0.90 16 34 H 0.07 0.90 8.09 -2.39 -0.02 0.88 16 35 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 36 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 37 H 0.07 0.93 8.09 -2.38 -0.02 0.91 16 38 H 0.06 0.95 8.08 -2.39 -0.02 0.93 16 39 H 0.12 2.40 8.06 -2.91 -0.02 2.38 16 40 H 0.13 1.51 7.80 -2.39 -0.02 1.49 16 41 H 0.13 1.49 8.08 -2.38 -0.02 1.47 16 42 H 0.11 1.03 7.31 -2.39 -0.02 1.01 16 43 H 0.09 1.21 7.13 -2.39 -0.02 1.20 16 44 H 0.09 1.39 8.14 -2.39 -0.02 1.37 16 45 H 0.08 1.43 7.19 -2.39 -0.02 1.41 16 46 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 47 H 0.05 1.74 8.14 -2.39 -0.02 1.72 16 48 H 0.37 20.34 7.59 -92.71 -0.70 19.64 16 49 H 0.25 15.16 8.31 -92.71 -0.77 14.39 16 50 H 0.06 2.08 7.13 -2.39 -0.02 2.07 16 51 H 0.04 1.69 7.92 -2.39 -0.02 1.67 16 52 H 0.13 2.34 8.06 -2.91 -0.02 2.32 16 Total: -1.00 -76.96 414.15 3.56 -73.40 By element: Atomic # 1 Polarization: 32.90 SS G_CDS: 0.20 Total: 33.10 kcal Atomic # 6 Polarization: -20.80 SS G_CDS: 5.46 Total: -15.34 kcal Atomic # 7 Polarization: -113.29 SS G_CDS: -4.08 Total: -117.38 kcal Atomic # 8 Polarization: -22.61 SS G_CDS: -0.05 Total: -22.66 kcal Atomic # 14 Polarization: 46.85 SS G_CDS: 2.03 Total: 48.88 kcal Total: -76.96 3.56 -73.40 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026349152.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.241 kcal (2) G-P(sol) polarization free energy of solvation -76.958 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -36.717 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.557 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.401 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.160 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds