Wall clock time and date at job start Wed Apr 1 2020 03:00:14 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.50703 * 109.46944 * 2 1 4 4 C 1.38235 * 120.00292 * 89.99931 * 3 2 1 5 5 C 1.38230 * 119.99899 * 179.97438 * 4 3 2 6 6 C 1.38235 * 120.00326 * 359.95697 * 5 4 3 7 7 C 1.50702 * 120.00236 * 179.72466 * 6 5 4 8 8 C 1.50690 * 109.47286 * 89.99933 * 7 6 5 9 9 O 1.21284 * 120.00243 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99981 * 179.97438 * 8 7 6 11 11 C 1.49621 * 126.06979 * 359.69038 * 10 8 7 12 12 C 1.51780 * 102.36943 * 154.28079 * 11 10 8 13 13 H 1.08997 * 111.74778 * 288.26875 * 12 11 10 14 14 C 1.51565 * 123.23078 * 151.78801 * 12 11 10 15 15 C 1.56338 * 101.81287 * 208.18224 * 14 12 11 16 16 C 1.56004 * 105.77040 * 25.43815 * 15 14 12 17 17 H 1.08998 * 110.52814 * 248.33206 * 16 15 14 18 18 N 1.46501 * 110.52712 * 125.58356 * 16 15 14 19 19 C 1.36940 * 119.99910 * 90.42979 * 18 16 15 20 20 H 1.08001 * 119.99820 * 0.02562 * 19 18 16 21 21 C 1.38812 * 119.99801 * 179.97438 * 19 18 16 22 22 N 1.31620 * 119.99950 * 180.02562 * 21 19 18 23 23 Si 1.86797 * 119.99910 * 0.02562 * 21 19 18 24 24 H 1.48498 * 109.47198 * 89.99820 * 23 21 19 25 25 H 1.48504 * 109.46970 * 209.99186 * 23 21 19 26 26 H 1.48497 * 109.47256 * 329.99411 * 23 21 19 27 27 C 1.49708 * 103.98654 * 6.96050 * 16 15 14 28 28 H 1.09000 * 107.88457 * 77.73053 * 27 16 15 29 29 C 1.49287 * 126.07231 * 179.97438 * 10 8 7 30 30 C 1.38234 * 119.99814 * 359.97438 * 6 5 4 31 31 C 1.38234 * 119.99503 * 269.97223 * 3 2 1 32 32 H 1.08998 * 109.47292 * 180.02562 * 1 2 3 33 33 H 1.09003 * 109.47369 * 300.00773 * 1 2 3 34 34 H 1.09000 * 109.47013 * 59.99897 * 1 2 3 35 35 H 1.08992 * 109.47214 * 239.99646 * 2 1 3 36 36 H 1.08996 * 109.46710 * 119.99413 * 2 1 3 37 37 H 1.08001 * 119.99730 * 359.97438 * 4 3 2 38 38 H 1.08000 * 120.00376 * 179.97438 * 5 4 3 39 39 H 1.09003 * 109.46871 * 209.99878 * 7 6 5 40 40 H 1.09001 * 109.47017 * 329.99216 * 7 6 5 41 41 H 1.08996 * 110.80463 * 272.61502 * 11 10 8 42 42 H 1.08997 * 110.80283 * 36.12138 * 11 10 8 43 43 H 1.08998 * 110.96158 * 326.31524 * 14 12 11 44 44 H 1.09001 * 110.95616 * 90.01659 * 14 12 11 45 45 H 1.08993 * 110.19136 * 144.51201 * 15 14 12 46 46 H 1.08998 * 110.19012 * 266.36404 * 15 14 12 47 47 H 0.97005 * 119.99998 * 270.43654 * 18 16 15 48 48 H 0.97000 * 120.00170 * 180.02562 * 22 21 19 49 49 H 1.09005 * 110.39559 * 292.39719 * 29 10 8 50 50 H 1.09003 * 110.39636 * 54.67755 * 29 10 8 51 51 H 1.08001 * 120.00299 * 179.97438 * 30 6 5 52 52 H 1.07997 * 120.00455 * 0.02562 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4209 0.0000 4 6 2.2627 2.0726 1.1971 5 6 2.7239 3.3756 1.1970 6 6 2.9556 4.0268 -0.0001 7 6 3.4526 5.4495 -0.0002 8 6 4.9594 5.4553 0.0046 9 8 5.5699 4.4073 0.0073 10 7 5.6289 6.6252 0.0048 11 6 5.0168 7.9904 -0.0059 12 6 6.0975 8.8363 0.6424 13 1 6.1800 8.6368 1.7107 14 6 6.2881 10.3104 0.3458 15 6 7.8185 10.4942 0.6071 16 6 8.4591 9.0902 0.3789 17 1 8.8244 8.6792 1.3200 18 7 9.5441 9.1739 -0.6020 19 6 10.8262 9.4153 -0.1859 20 1 11.0376 9.5436 0.8654 21 6 11.8542 9.4940 -1.1153 22 7 13.0866 9.7256 -0.7154 23 14 11.4886 9.2714 -2.9336 24 1 11.1734 10.5897 -3.5401 25 1 12.6749 8.6868 -3.6091 26 1 10.3270 8.3608 -3.0971 27 6 7.3326 8.2607 -0.1540 28 1 7.1961 8.5169 -1.2047 29 6 7.1127 6.7888 0.0098 30 6 2.7266 3.3746 -1.1972 31 6 2.2632 2.0722 -1.1972 32 1 -0.3634 -1.0276 0.0005 33 1 -0.3634 0.5140 0.8899 34 1 -0.3633 0.5138 -0.8900 35 1 1.8933 -0.5138 -0.8899 36 1 1.8932 -0.5137 0.8900 37 1 2.0823 1.5636 2.1324 38 1 2.9035 3.8850 2.1323 39 1 3.0901 5.9609 -0.8920 40 1 3.0843 5.9631 0.8879 41 1 4.8240 8.3202 -1.0267 42 1 4.1027 8.0095 0.5875 43 1 6.0399 10.5347 -0.6916 44 1 5.6991 10.9245 1.0270 45 1 8.2358 11.2165 -0.0943 46 1 7.9882 10.8230 1.6323 47 1 9.3542 9.0584 -1.5463 48 1 13.8050 9.7810 -1.3649 49 1 7.5296 6.4452 0.9566 50 1 7.5581 6.2417 -0.8212 51 1 2.9072 3.8834 -2.1326 52 1 2.0832 1.5631 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026364671.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:14 Heat of formation + Delta-G solvation = 8.798270 kcal Electronic energy + Delta-G solvation = -29183.133372 eV Core-core repulsion = 25340.550076 eV Total energy + Delta-G solvation = -3842.583296 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -40.70652 -39.80575 -38.49826 -35.47138 -34.85477 -33.46751 -31.72990 -31.19465 -31.10194 -29.76640 -28.74599 -27.28492 -25.64698 -23.83854 -23.01628 -22.93415 -22.47123 -20.87927 -20.33333 -19.35274 -19.17332 -17.62612 -16.79756 -16.76540 -16.21388 -16.02431 -15.35195 -15.21640 -14.83424 -14.59143 -14.30620 -14.12556 -14.02360 -13.78149 -13.56164 -13.47284 -13.16897 -12.94406 -12.75042 -12.55420 -12.33793 -12.24895 -12.00735 -11.95019 -11.83877 -11.59256 -11.48646 -11.14724 -11.09479 -11.04710 -10.89520 -10.84536 -10.53283 -10.41236 -10.07643 -9.91020 -9.78544 -9.58568 -9.06457 -8.95925 -8.69804 -8.68110 -7.30676 -5.79197 -3.15332 1.11752 1.26218 2.62735 2.82205 3.35811 3.38484 3.44211 3.58006 4.03206 4.38967 4.51875 4.53181 4.56914 4.60216 4.71946 4.78453 4.81870 4.99435 5.02153 5.05512 5.16147 5.16785 5.20326 5.21145 5.29981 5.31974 5.40732 5.48864 5.49281 5.55379 5.59452 5.62329 5.68333 5.76233 5.78703 5.88800 5.89268 5.90190 5.93398 6.03245 6.09846 6.16319 6.22282 6.27374 6.34041 6.40997 6.42779 6.49971 6.67976 6.83100 6.90488 7.47790 7.96613 8.15116 8.39857 9.17480 9.90059 10.09056 11.38990 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018537 B = 0.002048 C = 0.001932 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1510.168091 B =13665.619248 C =14490.785297 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.086 4.086 3 C -0.085 4.085 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.068 4.068 7 C -0.097 4.097 8 C 0.528 3.472 9 O -0.533 6.533 10 N -0.627 5.627 11 C 0.117 3.883 12 C -0.125 4.125 13 H 0.090 0.910 14 C -0.101 4.101 15 C -0.143 4.143 16 C 0.203 3.797 17 H 0.064 0.936 18 N -0.744 5.744 19 C -0.245 4.245 20 H 0.091 0.909 21 C 0.006 3.994 22 N -0.932 5.932 23 Si 0.883 3.117 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.277 1.277 27 C -0.125 4.125 28 H 0.072 0.928 29 C 0.133 3.867 30 C -0.102 4.102 31 C -0.117 4.117 32 H 0.056 0.944 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.101 0.899 41 H 0.073 0.927 42 H 0.076 0.924 43 H 0.065 0.935 44 H 0.062 0.938 45 H 0.074 0.926 46 H 0.060 0.940 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.071 0.929 50 H 0.073 0.927 51 H 0.119 0.881 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.146 -10.601 2.280 31.098 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.069 4.069 7 C -0.137 4.137 8 C 0.316 3.684 9 O -0.409 6.409 10 N -0.363 5.363 11 C -0.005 4.005 12 C -0.145 4.145 13 H 0.108 0.892 14 C -0.140 4.140 15 C -0.183 4.183 16 C 0.092 3.908 17 H 0.082 0.918 18 N -0.386 5.386 19 C -0.375 4.375 20 H 0.109 0.891 21 C -0.190 4.190 22 N -0.580 5.580 23 Si 0.713 3.287 24 H -0.211 1.211 25 H -0.217 1.217 26 H -0.204 1.204 27 C -0.145 4.145 28 H 0.090 0.910 29 C 0.013 3.987 30 C -0.120 4.120 31 C -0.135 4.135 32 H 0.075 0.925 33 H 0.074 0.926 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.091 0.909 42 H 0.095 0.905 43 H 0.084 0.916 44 H 0.081 0.919 45 H 0.093 0.907 46 H 0.078 0.922 47 H 0.194 0.806 48 H 0.070 0.930 49 H 0.089 0.911 50 H 0.091 0.909 51 H 0.137 0.863 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -28.616 -11.236 2.401 30.836 hybrid contribution 0.012 0.036 -1.408 1.408 sum -28.604 -11.200 0.993 30.735 Atomic orbital electron populations 1.21744 0.94774 1.01615 1.02180 1.20542 0.96095 0.92785 1.02872 1.19874 0.99234 0.96098 0.93253 1.20945 1.00341 0.94741 0.97480 1.20946 0.98745 0.94925 0.97327 1.19267 0.99266 0.94709 0.93638 1.20652 0.92492 0.95496 1.05038 1.20162 0.89342 0.82372 0.76560 1.90746 1.69925 1.30707 1.49522 1.49916 1.07523 1.05395 1.73496 1.21840 0.96159 0.81756 1.00761 1.22623 0.95253 0.96190 1.00406 0.89216 1.21881 0.97707 0.93214 1.01154 1.23748 0.92628 1.00327 1.01630 1.19922 0.86096 0.91294 0.93459 0.91763 1.42857 1.04614 1.87140 1.03966 1.19085 0.82368 1.41131 0.94928 0.89122 1.24672 0.95220 1.01738 0.97372 1.69697 0.99169 1.55894 1.33229 0.86573 0.77178 0.77857 0.87048 1.21114 1.21732 1.20361 1.22132 0.97526 0.93687 1.01138 0.90969 1.20964 0.79087 0.96088 1.02610 1.20954 0.98734 0.94936 0.97348 1.20949 1.00321 0.94755 0.97491 0.92471 0.92581 0.92583 0.91076 0.91066 0.86218 0.86271 0.88147 0.88112 0.90874 0.90521 0.91612 0.91929 0.90729 0.92156 0.80574 0.93041 0.91099 0.90892 0.86296 0.86232 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.87 9.89 37.16 0.37 -0.50 16 2 C -0.09 -0.61 6.06 -27.88 -0.17 -0.78 16 3 C -0.08 -0.80 5.13 -104.62 -0.54 -1.33 16 4 C -0.12 -1.14 9.70 -39.59 -0.38 -1.52 16 5 C -0.10 -1.06 9.70 -39.59 -0.38 -1.44 16 6 C -0.07 -0.74 4.37 -104.62 -0.46 -1.20 16 7 C -0.10 -0.91 4.88 -29.04 -0.14 -1.05 16 8 C 0.53 7.15 7.87 -10.99 -0.09 7.06 16 9 O -0.53 -9.58 16.40 5.55 0.09 -9.49 16 10 N -0.63 -8.00 3.42 -171.42 -0.59 -8.58 16 11 C 0.12 1.11 6.50 -2.92 -0.02 1.09 16 12 C -0.13 -1.40 3.16 -89.32 -0.28 -1.68 16 13 H 0.09 1.01 8.14 -51.93 -0.42 0.59 16 14 C -0.10 -1.14 6.61 -25.66 -0.17 -1.31 16 15 C -0.14 -2.17 6.74 -23.33 -0.16 -2.33 16 16 C 0.20 3.61 3.44 -67.95 -0.23 3.38 16 17 H 0.06 1.21 8.09 -51.93 -0.42 0.79 16 18 N -0.74 -16.85 4.90 -53.45 -0.26 -17.11 16 19 C -0.25 -6.74 10.44 -15.06 -0.16 -6.90 16 20 H 0.09 2.67 8.06 -52.49 -0.42 2.25 16 21 C 0.01 0.17 5.50 -17.43 -0.10 0.07 16 22 N -0.93 -29.04 13.97 55.49 0.78 -28.27 16 23 Si 0.88 21.95 27.74 -169.99 -4.71 17.24 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.40 7.11 56.52 0.40 -7.00 16 26 H -0.28 -6.52 6.52 56.52 0.37 -6.16 16 27 C -0.12 -1.83 2.20 -91.23 -0.20 -2.03 16 28 H 0.07 1.10 7.72 -51.93 -0.40 0.70 16 29 C 0.13 2.02 6.82 -4.12 -0.03 1.99 16 30 C -0.10 -1.07 9.70 -39.58 -0.38 -1.46 16 31 C -0.12 -1.15 9.70 -39.58 -0.38 -1.53 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.15 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.09 16 34 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 35 H 0.07 0.47 8.08 -51.93 -0.42 0.05 16 36 H 0.07 0.47 8.09 -51.93 -0.42 0.05 16 37 H 0.12 0.93 8.06 -52.49 -0.42 0.51 16 38 H 0.12 1.07 8.06 -52.49 -0.42 0.65 16 39 H 0.10 0.74 8.08 -51.93 -0.42 0.32 16 40 H 0.10 0.72 7.86 -51.93 -0.41 0.31 16 41 H 0.07 0.64 8.14 -51.93 -0.42 0.22 16 42 H 0.08 0.54 7.58 -51.93 -0.39 0.14 16 43 H 0.07 0.72 8.14 -51.93 -0.42 0.29 16 44 H 0.06 0.60 8.14 -51.93 -0.42 0.18 16 45 H 0.07 1.28 7.98 -51.93 -0.41 0.87 16 46 H 0.06 0.88 8.14 -51.93 -0.42 0.46 16 47 H 0.36 8.13 5.51 -40.82 -0.22 7.90 16 48 H 0.26 7.72 8.31 -40.82 -0.34 7.39 16 49 H 0.07 1.12 8.14 -51.93 -0.42 0.69 16 50 H 0.07 1.22 8.14 -51.93 -0.42 0.80 16 51 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 52 H 0.12 0.95 8.06 -52.49 -0.42 0.52 16 LS Contribution 414.61 15.07 6.25 6.25 Total: -1.00 -33.74 414.61 -11.39 -45.13 By element: Atomic # 1 Polarization: 15.33 SS G_CDS: -9.03 Total: 6.29 kcal Atomic # 6 Polarization: -7.55 SS G_CDS: -3.90 Total: -11.45 kcal Atomic # 7 Polarization: -53.89 SS G_CDS: -0.07 Total: -53.97 kcal Atomic # 8 Polarization: -9.58 SS G_CDS: 0.09 Total: -9.49 kcal Atomic # 14 Polarization: 21.95 SS G_CDS: -4.71 Total: 17.24 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.74 -11.39 -45.13 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026364671.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 53.926 kcal (2) G-P(sol) polarization free energy of solvation -33.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.184 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.386 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.128 kcal (6) G-S(sol) free energy of system = (1) + (5) 8.798 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds