Wall clock time and date at job start Wed Apr 1 2020 03:00:18 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50701 * 109.47055 * 2 1 4 4 C 1.38235 * 119.99917 * 89.99788 * 3 2 1 5 5 C 1.38240 * 119.99789 * 180.02562 * 4 3 2 6 6 C 1.38234 * 120.00079 * 359.95210 * 5 4 3 7 7 C 1.50701 * 119.99951 * 180.02562 * 6 5 4 8 8 C 1.50707 * 109.46864 * 90.00364 * 7 6 5 9 9 O 1.21277 * 120.00007 * 359.97438 * 8 7 6 10 10 N 1.34777 * 119.99826 * 179.97438 * 8 7 6 11 11 C 1.47352 * 125.70114 * 0.02562 * 10 8 7 12 12 C 1.54649 * 105.12948 * 204.79920 * 11 10 8 13 13 H 1.09007 * 113.79382 * 200.27725 * 12 11 10 14 14 C 1.54457 * 108.64093 * 71.45561 * 12 11 10 15 15 C 1.54103 * 104.72902 * 216.45903 * 14 12 11 16 16 C 1.53725 * 106.67605 * 23.40718 * 15 14 12 17 17 H 1.08993 * 110.07384 * 239.66133 * 16 15 14 18 18 N 1.46497 * 109.91223 * 118.47293 * 16 15 14 19 19 C 1.36939 * 119.99997 * 156.57685 * 18 16 15 20 20 H 1.08001 * 120.00007 * 359.97438 * 19 18 16 21 21 C 1.38813 * 120.00236 * 179.97438 * 19 18 16 22 22 N 1.31625 * 119.99851 * 0.02562 * 21 19 18 23 23 Si 1.86794 * 120.00164 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.46957 * 359.97438 * 23 21 19 25 25 H 1.48493 * 109.47292 * 119.99911 * 23 21 19 26 26 H 1.48500 * 109.47277 * 239.99898 * 23 21 19 27 27 C 1.53910 * 107.07792 * 359.11062 * 16 15 14 28 28 H 1.08995 * 112.92209 * 215.04232 * 27 16 15 29 29 C 1.47027 * 125.70075 * 179.71469 * 10 8 7 30 30 C 1.38235 * 119.99725 * 0.27733 * 6 5 4 31 31 C 1.38234 * 120.00378 * 359.51757 * 30 6 5 32 32 H 1.09002 * 109.46964 * 60.00362 * 1 2 3 33 33 H 1.09007 * 109.47019 * 179.97438 * 1 2 3 34 34 H 1.08995 * 109.47362 * 299.99744 * 1 2 3 35 35 H 1.09000 * 109.47755 * 240.00006 * 2 1 3 36 36 H 1.09002 * 109.46964 * 119.99638 * 2 1 3 37 37 H 1.08000 * 120.00473 * 359.97438 * 4 3 2 38 38 H 1.07999 * 119.99624 * 179.97438 * 5 4 3 39 39 H 1.08993 * 109.47137 * 330.00276 * 7 6 5 40 40 H 1.08998 * 109.47023 * 209.99997 * 7 6 5 41 41 H 1.08999 * 110.31087 * 323.71496 * 11 10 8 42 42 H 1.09007 * 110.30783 * 85.79150 * 11 10 8 43 43 H 1.08999 * 110.38121 * 335.27571 * 14 12 11 44 44 H 1.08999 * 110.38581 * 97.64644 * 14 12 11 45 45 H 1.09007 * 110.02043 * 264.10076 * 15 14 12 46 46 H 1.09005 * 110.05639 * 142.73116 * 15 14 12 47 47 H 0.97004 * 120.00249 * 336.57165 * 18 16 15 48 48 H 0.96991 * 120.00129 * 180.02562 * 22 21 19 49 49 H 1.09004 * 109.83116 * 297.26961 * 29 10 8 50 50 H 1.09003 * 109.83044 * 58.23387 * 29 10 8 51 51 H 1.08005 * 119.99657 * 179.72574 * 30 6 5 52 52 H 1.07999 * 120.00035 * 180.25598 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2626 2.0725 1.1972 5 6 2.7229 3.3760 1.1971 6 6 2.9537 4.0275 0.0000 7 6 3.4561 5.4483 0.0000 8 6 4.9631 5.4482 0.0005 9 8 5.5695 4.3979 0.0013 10 7 5.6370 6.6154 0.0001 11 6 5.0307 7.9584 -0.0004 12 6 6.0997 8.8838 -0.6269 13 1 5.9622 9.9386 -0.3891 14 6 6.1959 8.5751 -2.1373 15 6 7.6922 8.7263 -2.4736 16 6 8.4629 8.5176 -1.1599 17 1 9.0468 9.4070 -0.9234 18 7 9.3485 7.3569 -1.2800 19 6 10.4494 7.2492 -0.4728 20 1 10.6650 8.0202 0.2521 21 6 11.2883 6.1491 -0.5862 22 7 11.0259 5.2096 -1.4700 23 14 12.7905 6.0026 0.5144 24 1 12.8619 7.1820 1.4140 25 1 12.6893 4.7644 1.3279 26 1 14.0148 5.9453 -0.3240 27 6 7.4180 8.2681 -0.0577 28 1 7.7074 8.6898 0.9048 29 6 7.1000 6.7615 0.0064 30 6 2.7189 3.3773 -1.1971 31 6 2.2626 2.0725 -1.1972 32 1 -0.3633 0.5138 -0.8900 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3634 0.5138 0.8899 35 1 1.8934 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 2.0822 1.5636 2.1325 38 1 2.9024 3.8852 2.1325 39 1 3.0924 5.9622 0.8897 40 1 3.0931 5.9620 -0.8902 41 1 4.1240 7.9640 -0.6053 42 1 4.8067 8.2727 1.0191 43 1 5.8624 7.5571 -2.3387 44 1 5.6041 9.2896 -2.7093 45 1 7.8874 9.7243 -2.8662 46 1 7.9891 7.9736 -3.2039 47 1 9.1550 6.6645 -1.9313 48 1 11.6118 4.4408 -1.5490 49 1 7.5104 6.3335 0.9211 50 1 7.5256 6.2584 -0.8619 51 1 2.8950 3.8879 -2.1325 52 1 2.0831 1.5632 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026364672.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:18 Heat of formation + Delta-G solvation = -4.282022 kcal Electronic energy + Delta-G solvation = -29996.366131 eV Core-core repulsion = 26153.215631 eV Total energy + Delta-G solvation = -3843.150500 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.23 seconds Orbital eigenvalues (eV) -40.42157 -39.55207 -38.11014 -35.01534 -34.67710 -33.20669 -31.46792 -30.92747 -30.86540 -29.27311 -28.33049 -27.16774 -25.31843 -23.86353 -23.09155 -22.75979 -22.70959 -20.69130 -19.79736 -18.95391 -18.70924 -17.39286 -16.84702 -16.27513 -16.04221 -15.58434 -15.27277 -14.87639 -14.71063 -14.66869 -13.93939 -13.88092 -13.82123 -13.49128 -13.30878 -13.17278 -13.01135 -12.91785 -12.72631 -12.41590 -12.19591 -12.03716 -11.88398 -11.72919 -11.40070 -11.33471 -11.07103 -10.92054 -10.88559 -10.76041 -10.69356 -10.57341 -10.32738 -10.26297 -10.14947 -9.87064 -9.61030 -9.52744 -8.88822 -8.86976 -8.51222 -8.19893 -6.94012 -5.74620 -3.04303 1.30116 1.43737 2.95050 3.28973 3.45198 3.50219 3.53205 3.80171 4.56477 4.58366 4.62606 4.68758 4.72337 4.80106 4.88650 4.94742 4.98708 5.15304 5.16658 5.23291 5.34311 5.35611 5.45894 5.49340 5.51576 5.56733 5.57846 5.62096 5.65484 5.68057 5.77346 5.81813 5.90837 5.92666 5.98540 6.04880 6.07310 6.10773 6.14142 6.32154 6.36213 6.39796 6.57145 6.58703 6.60148 6.60960 6.74151 6.86406 6.89260 7.00827 7.03237 7.72992 7.89627 8.43086 8.52478 9.54278 10.10616 10.44005 11.47481 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.011859 B = 0.002695 C = 0.002351 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2360.442744 B =10388.130224 C =11907.328038 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.086 4.086 4 C -0.117 4.117 5 C -0.102 4.102 6 C -0.066 4.066 7 C -0.097 4.097 8 C 0.521 3.479 9 O -0.526 6.526 10 N -0.618 5.618 11 C 0.105 3.895 12 C -0.107 4.107 13 H 0.099 0.901 14 C -0.112 4.112 15 C -0.129 4.129 16 C 0.180 3.820 17 H 0.053 0.947 18 N -0.718 5.718 19 C -0.243 4.243 20 H 0.071 0.929 21 C -0.010 4.010 22 N -0.928 5.928 23 Si 0.904 3.096 24 H -0.281 1.281 25 H -0.292 1.292 26 H -0.292 1.292 27 C -0.117 4.117 28 H 0.081 0.919 29 C 0.130 3.870 30 C -0.101 4.101 31 C -0.117 4.117 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.055 0.945 35 H 0.071 0.929 36 H 0.070 0.930 37 H 0.119 0.881 38 H 0.118 0.882 39 H 0.097 0.903 40 H 0.098 0.902 41 H 0.069 0.931 42 H 0.062 0.938 43 H 0.065 0.935 44 H 0.058 0.942 45 H 0.060 0.940 46 H 0.068 0.932 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.059 0.941 50 H 0.090 0.910 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -23.569 1.369 1.889 23.684 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.086 4.086 4 C -0.135 4.135 5 C -0.120 4.120 6 C -0.066 4.066 7 C -0.137 4.137 8 C 0.309 3.691 9 O -0.402 6.402 10 N -0.353 5.353 11 C -0.019 4.019 12 C -0.126 4.126 13 H 0.117 0.883 14 C -0.150 4.150 15 C -0.167 4.167 16 C 0.069 3.931 17 H 0.071 0.929 18 N -0.359 5.359 19 C -0.375 4.375 20 H 0.089 0.911 21 C -0.206 4.206 22 N -0.575 5.575 23 Si 0.735 3.265 24 H -0.206 1.206 25 H -0.219 1.219 26 H -0.219 1.219 27 C -0.140 4.140 28 H 0.099 0.901 29 C 0.008 3.992 30 C -0.119 4.119 31 C -0.135 4.135 32 H 0.074 0.926 33 H 0.075 0.925 34 H 0.074 0.926 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.137 0.863 38 H 0.136 0.864 39 H 0.116 0.884 40 H 0.116 0.884 41 H 0.087 0.913 42 H 0.080 0.920 43 H 0.083 0.917 44 H 0.077 0.923 45 H 0.078 0.922 46 H 0.086 0.914 47 H 0.220 0.780 48 H 0.065 0.935 49 H 0.077 0.923 50 H 0.108 0.892 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -23.091 0.708 1.985 23.187 hybrid contribution 0.919 -0.273 0.509 1.085 sum -22.172 0.435 2.494 22.316 Atomic orbital electron populations 1.21742 0.94871 1.01513 1.02130 1.20534 0.95991 0.92873 1.02854 1.19849 0.99460 0.96047 0.93272 1.20928 1.00465 0.94736 0.97418 1.20937 0.98823 0.94931 0.97333 1.19282 0.98864 0.94861 0.93593 1.20658 0.93039 0.95323 1.04687 1.20061 0.89044 0.82680 0.77318 1.90776 1.70030 1.30395 1.49014 1.48667 1.08716 1.04970 1.72935 1.22233 0.96541 0.82990 1.00126 1.23196 0.95139 0.98401 0.95874 0.88268 1.22216 0.97123 1.01170 0.94495 1.22384 0.94096 1.01336 0.98874 1.20716 0.89873 0.91680 0.90846 0.92948 1.42649 1.26918 1.21925 1.44409 1.19243 1.00725 1.04292 1.13191 0.91150 1.24747 0.99344 0.97227 0.99307 1.69662 1.39370 1.11320 1.37169 0.86171 0.83043 0.77391 0.79884 1.20591 1.21879 1.21926 1.23572 0.95642 0.93993 1.00765 0.90112 1.21905 0.77091 0.96442 1.03714 1.20955 0.98668 0.94920 0.97377 1.20938 1.00371 0.94710 0.97442 0.92604 0.92550 0.92625 0.91077 0.91119 0.86321 0.86363 0.88437 0.88371 0.91250 0.91958 0.91651 0.92323 0.92154 0.91357 0.78038 0.93490 0.92302 0.89177 0.86270 0.86263 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.06 9.89 37.16 0.37 -0.69 16 2 C -0.09 -0.75 6.06 -27.88 -0.17 -0.92 16 3 C -0.09 -0.98 5.13 -104.62 -0.54 -1.51 16 4 C -0.12 -1.37 9.70 -39.58 -0.38 -1.75 16 5 C -0.10 -1.28 9.70 -39.58 -0.38 -1.67 16 6 C -0.07 -0.86 4.37 -104.62 -0.46 -1.31 16 7 C -0.10 -1.15 4.83 -29.03 -0.14 -1.29 16 8 C 0.52 8.74 7.84 -10.98 -0.09 8.66 16 9 O -0.53 -11.59 16.36 5.56 0.09 -11.50 16 10 N -0.62 -9.79 2.83 -170.86 -0.48 -10.27 16 11 C 0.10 1.20 5.93 -2.71 -0.02 1.18 16 12 C -0.11 -1.31 4.27 -87.25 -0.37 -1.68 16 13 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 14 C -0.11 -1.46 5.85 -25.39 -0.15 -1.61 16 15 C -0.13 -2.02 6.55 -25.78 -0.17 -2.18 16 16 C 0.18 3.37 3.26 -67.08 -0.22 3.15 16 17 H 0.05 1.00 8.09 -51.93 -0.42 0.58 16 18 N -0.72 -17.38 3.57 -52.60 -0.19 -17.57 16 19 C -0.24 -6.62 9.95 -15.06 -0.15 -6.77 16 20 H 0.07 1.86 7.83 -52.49 -0.41 1.45 16 21 C -0.01 -0.28 5.50 -17.43 -0.10 -0.38 16 22 N -0.93 -28.37 13.06 55.49 0.72 -27.65 16 23 Si 0.90 22.67 29.55 -169.99 -5.02 17.65 16 24 H -0.28 -6.78 7.11 56.52 0.40 -6.37 16 25 H -0.29 -7.46 7.11 56.52 0.40 -7.06 16 26 H -0.29 -7.36 7.11 56.52 0.40 -6.96 16 27 C -0.12 -1.94 3.96 -87.83 -0.35 -2.29 16 28 H 0.08 1.32 8.14 -51.93 -0.42 0.90 16 29 C 0.13 2.52 5.44 -3.17 -0.02 2.50 16 30 C -0.10 -1.29 9.70 -39.58 -0.38 -1.67 16 31 C -0.12 -1.38 9.70 -39.58 -0.38 -1.76 16 32 H 0.05 0.41 8.14 -51.93 -0.42 -0.02 16 33 H 0.06 0.34 8.14 -51.93 -0.42 -0.08 16 34 H 0.05 0.40 8.14 -51.93 -0.42 -0.02 16 35 H 0.07 0.59 8.09 -51.93 -0.42 0.17 16 36 H 0.07 0.58 8.09 -51.93 -0.42 0.16 16 37 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 38 H 0.12 1.32 8.06 -52.49 -0.42 0.89 16 39 H 0.10 0.92 8.08 -51.93 -0.42 0.50 16 40 H 0.10 0.94 7.78 -51.93 -0.40 0.53 16 41 H 0.07 0.63 7.41 -51.93 -0.38 0.25 16 42 H 0.06 0.63 8.14 -51.92 -0.42 0.21 16 43 H 0.06 0.95 7.30 -51.93 -0.38 0.57 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 46 H 0.07 1.20 7.59 -51.93 -0.39 0.80 16 47 H 0.38 10.16 6.81 -40.82 -0.28 9.89 16 48 H 0.26 7.61 8.31 -40.82 -0.34 7.28 16 49 H 0.06 1.30 8.14 -51.93 -0.42 0.88 16 50 H 0.09 2.09 6.12 -51.93 -0.32 1.77 16 51 H 0.12 1.36 8.06 -52.48 -0.42 0.94 16 52 H 0.12 1.17 8.06 -52.49 -0.42 0.74 16 LS Contribution 411.37 15.07 6.20 6.20 Total: -1.00 -33.56 411.37 -11.66 -45.22 By element: Atomic # 1 Polarization: 18.79 SS G_CDS: -8.88 Total: 9.91 kcal Atomic # 6 Polarization: -7.89 SS G_CDS: -4.09 Total: -11.99 kcal Atomic # 7 Polarization: -55.54 SS G_CDS: 0.05 Total: -55.48 kcal Atomic # 8 Polarization: -11.59 SS G_CDS: 0.09 Total: -11.50 kcal Atomic # 14 Polarization: 22.67 SS G_CDS: -5.02 Total: 17.65 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -33.56 -11.66 -45.22 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026364672.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 40.936 kcal (2) G-P(sol) polarization free energy of solvation -33.563 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.373 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.655 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.218 kcal (6) G-S(sol) free energy of system = (1) + (5) -4.282 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.23 seconds