Wall clock time and date at job start Wed Apr 1 2020 03:00:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50698 * 109.46744 * 2 1 4 4 C 1.38230 * 120.00361 * 90.00441 * 3 2 1 5 5 C 1.38230 * 120.00626 * 179.97438 * 4 3 2 6 6 C 1.38245 * 119.99541 * 359.97261 * 5 4 3 7 7 C 1.50701 * 119.99592 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46866 * 90.00281 * 7 6 5 9 9 O 1.21281 * 119.99975 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99876 * 179.97438 * 8 7 6 11 11 C 1.49626 * 126.07341 * 359.97438 * 10 8 7 12 12 C 1.51524 * 102.49417 * 154.35173 * 11 10 8 13 13 H 1.09004 * 111.12896 * 287.40520 * 12 11 10 14 14 C 1.51563 * 123.33650 * 151.63313 * 12 11 10 15 15 C 1.56340 * 101.81374 * 207.25437 * 14 12 11 16 16 C 1.56005 * 105.76715 * 25.43393 * 15 14 12 17 17 H 1.09004 * 110.52155 * 125.72484 * 16 15 14 18 18 N 1.46496 * 110.52375 * 248.32932 * 16 15 14 19 19 C 1.36934 * 120.00548 * 271.65929 * 18 16 15 20 20 H 1.08004 * 119.99288 * 0.02562 * 19 18 16 21 21 C 1.38805 * 120.00389 * 180.02562 * 19 18 16 22 22 N 1.31624 * 120.00257 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48499 * 109.46981 * 150.00382 * 23 21 19 27 27 C 1.49704 * 104.11342 * 7.03138 * 16 15 14 28 28 H 1.08993 * 108.54481 * 77.89513 * 27 16 15 29 29 C 1.49295 * 126.07071 * 179.97438 * 10 8 7 30 30 C 1.38229 * 120.00071 * 0.28176 * 6 5 4 31 31 C 1.38237 * 120.00169 * 359.52825 * 30 6 5 32 32 H 1.08993 * 109.46735 * 300.00093 * 1 2 3 33 33 H 1.08999 * 109.46825 * 60.00371 * 1 2 3 34 34 H 1.08999 * 109.46868 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.46764 * 239.99656 * 2 1 3 36 36 H 1.08999 * 109.46825 * 119.99629 * 2 1 3 37 37 H 1.08005 * 119.99982 * 359.97438 * 4 3 2 38 38 H 1.07997 * 120.00265 * 179.97438 * 5 4 3 39 39 H 1.08992 * 109.47658 * 330.00427 * 7 6 5 40 40 H 1.08998 * 109.46910 * 209.99777 * 7 6 5 41 41 H 1.08999 * 110.80000 * 36.09823 * 11 10 8 42 42 H 1.09002 * 110.96740 * 272.67778 * 11 10 8 43 43 H 1.09002 * 110.96439 * 89.12135 * 14 12 11 44 44 H 1.09005 * 110.96036 * 325.38361 * 14 12 11 45 45 H 1.09000 * 110.18882 * 266.36187 * 15 14 12 46 46 H 1.08993 * 110.25255 * 144.54430 * 15 14 12 47 47 H 0.96999 * 119.99694 * 91.66453 * 18 16 15 48 48 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 49 49 H 1.08993 * 110.39598 * 292.41504 * 29 10 8 50 50 H 1.08995 * 110.39404 * 54.70185 * 29 10 8 51 51 H 1.08001 * 120.00350 * 179.72790 * 30 6 5 52 52 H 1.07995 * 120.00625 * 180.23666 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0725 1.1971 5 6 2.7240 3.3756 1.1971 6 6 2.9553 4.0269 -0.0001 7 6 3.4575 5.4478 -0.0001 8 6 4.9646 5.4478 0.0011 9 8 5.5710 4.3975 0.0013 10 7 5.6384 6.6150 0.0008 11 6 5.0315 7.9827 -0.0011 12 6 6.1168 8.8238 0.6397 13 1 6.1880 8.6250 1.7091 14 6 6.3123 10.2974 0.3439 15 6 7.8402 10.4794 0.6207 16 6 8.4813 9.0744 0.4002 17 1 9.2976 9.1355 -0.3195 18 7 8.9586 8.5226 1.6706 19 6 10.2267 8.8022 2.1052 20 1 10.8748 9.4299 1.5116 21 6 10.6791 8.2789 3.3086 22 7 11.8978 8.5481 3.7266 23 14 9.5578 7.1938 4.3357 24 1 8.7816 8.0373 5.2797 25 1 8.6237 6.4619 3.4429 26 1 10.3768 6.2197 5.1009 27 6 7.3616 8.2438 -0.1453 28 1 7.2300 8.4885 -1.1992 29 6 7.1230 6.7730 0.0024 30 6 2.7198 3.3771 -1.1972 31 6 2.2624 2.0726 -1.1973 32 1 -0.3632 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 2.0825 1.5635 2.1324 38 1 2.9036 3.8848 2.1324 39 1 3.0936 5.9618 0.8894 40 1 3.0949 5.9613 -0.8905 41 1 4.1213 8.0031 0.5981 42 1 4.8310 8.3190 -1.0184 43 1 5.7176 10.9129 1.0190 44 1 6.0750 10.5211 -0.6962 45 1 7.9998 10.8089 1.6473 46 1 8.2665 11.2010 -0.0761 47 1 8.3764 7.9591 2.2038 48 1 12.2138 8.1827 4.5678 49 1 7.5408 6.4266 0.9476 50 1 7.5641 6.2254 -0.8304 51 1 2.8963 3.8874 -2.1326 52 1 2.0821 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026364673.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:22 Heat of formation + Delta-G solvation = 9.188304 kcal Electronic energy + Delta-G solvation = -29619.228151 eV Core-core repulsion = 25776.661768 eV Total energy + Delta-G solvation = -3842.566383 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -40.67776 -39.77819 -38.46541 -35.36832 -34.81749 -33.37832 -31.69390 -31.13349 -31.06546 -29.70645 -28.79123 -27.25315 -25.69632 -23.81474 -23.08813 -22.89747 -22.57805 -20.83034 -20.15836 -19.19195 -18.98544 -17.85453 -16.76091 -16.65780 -16.17242 -15.93563 -15.32327 -15.17042 -14.77408 -14.53471 -14.26199 -14.08452 -13.99019 -13.88215 -13.73661 -13.45235 -13.12755 -12.82245 -12.66872 -12.57767 -12.29163 -12.21302 -12.04906 -11.89638 -11.73658 -11.45546 -11.44432 -11.12844 -11.06102 -11.01306 -10.90413 -10.79394 -10.47330 -10.34738 -10.14336 -9.90481 -9.68398 -9.56905 -9.02809 -8.94950 -8.66122 -8.61540 -7.29376 -5.78583 -3.14320 1.15399 1.29854 2.68200 2.87215 3.36647 3.40628 3.45760 3.61822 4.06315 4.42656 4.55801 4.57289 4.57933 4.64876 4.76703 4.83224 4.85467 5.03156 5.05046 5.09119 5.15847 5.20802 5.23424 5.27923 5.35218 5.38033 5.44178 5.46294 5.50102 5.57525 5.58151 5.65590 5.68006 5.79971 5.82194 5.87095 5.92378 5.93791 6.03584 6.11366 6.14761 6.24765 6.26225 6.31528 6.39671 6.44837 6.46257 6.48228 6.67801 6.86763 6.92140 7.53282 7.97657 8.20639 8.40719 9.18513 9.91253 10.10358 11.39637 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014508 B = 0.002467 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.572434 B =11347.671803 C =12652.502174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.068 4.068 7 C -0.097 4.097 8 C 0.527 3.473 9 O -0.532 6.532 10 N -0.626 5.626 11 C 0.116 3.884 12 C -0.127 4.127 13 H 0.088 0.912 14 C -0.099 4.099 15 C -0.144 4.144 16 C 0.203 3.797 17 H 0.064 0.936 18 N -0.743 5.743 19 C -0.244 4.244 20 H 0.092 0.908 21 C 0.007 3.993 22 N -0.932 5.932 23 Si 0.880 3.120 24 H -0.285 1.285 25 H -0.277 1.277 26 H -0.290 1.290 27 C -0.123 4.123 28 H 0.072 0.928 29 C 0.130 3.870 30 C -0.102 4.102 31 C -0.117 4.117 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.119 0.881 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.075 0.925 42 H 0.073 0.927 43 H 0.062 0.938 44 H 0.064 0.936 45 H 0.077 0.923 46 H 0.058 0.942 47 H 0.361 0.639 48 H 0.259 0.741 49 H 0.074 0.926 50 H 0.072 0.928 51 H 0.119 0.881 52 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -25.535 -7.122 -10.793 28.622 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.068 4.068 7 C -0.137 4.137 8 C 0.315 3.685 9 O -0.408 6.408 10 N -0.362 5.362 11 C -0.006 4.006 12 C -0.146 4.146 13 H 0.107 0.893 14 C -0.137 4.137 15 C -0.185 4.185 16 C 0.093 3.907 17 H 0.082 0.918 18 N -0.385 5.385 19 C -0.373 4.373 20 H 0.109 0.891 21 C -0.189 4.189 22 N -0.580 5.580 23 Si 0.710 3.290 24 H -0.211 1.211 25 H -0.204 1.204 26 H -0.217 1.217 27 C -0.143 4.143 28 H 0.090 0.910 29 C 0.009 3.991 30 C -0.120 4.120 31 C -0.135 4.135 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.138 0.862 38 H 0.137 0.863 39 H 0.119 0.881 40 H 0.119 0.881 41 H 0.094 0.906 42 H 0.091 0.909 43 H 0.081 0.919 44 H 0.083 0.917 45 H 0.096 0.904 46 H 0.077 0.923 47 H 0.194 0.806 48 H 0.069 0.931 49 H 0.092 0.908 50 H 0.090 0.910 51 H 0.137 0.863 52 H 0.138 0.862 Dipole moment (debyes) X Y Z Total from point charges -24.994 -7.719 -10.772 28.290 hybrid contribution -0.606 -0.636 0.913 1.267 sum -25.600 -8.355 -9.859 28.677 Atomic orbital electron populations 1.21745 0.94783 1.01599 1.02176 1.20543 0.96082 0.92792 1.02864 1.19871 0.99269 0.96102 0.93251 1.20953 1.00270 0.94728 0.97511 1.20972 0.98608 0.94944 0.97407 1.19269 0.99182 0.94750 0.93635 1.20650 0.92473 0.95519 1.05020 1.20152 0.89302 0.82406 0.76610 1.90745 1.70151 1.30457 1.49487 1.49878 1.07477 1.05388 1.73485 1.21787 0.96300 0.81824 1.00663 1.22692 0.95006 0.96115 1.00828 0.89342 1.21839 0.97810 0.93346 1.00716 1.23808 0.92755 0.99286 1.02622 1.19986 0.92446 0.89823 0.88480 0.91767 1.42791 1.14601 1.59577 1.21540 1.19072 0.88869 1.26044 1.03347 0.89070 1.24655 0.96181 1.00267 0.97835 1.69695 1.16358 1.49119 1.22825 0.86630 0.80535 0.81004 0.80826 1.21146 1.20352 1.21671 1.22115 0.97954 0.93906 1.00293 0.90965 1.20901 0.79054 0.96086 1.03015 1.20933 0.98883 0.94914 0.97273 1.20938 1.00442 0.94716 0.97448 0.92570 0.92597 0.92480 0.91086 0.91068 0.86210 0.86252 0.88133 0.88143 0.90625 0.90893 0.91921 0.91749 0.90394 0.92348 0.80575 0.93054 0.90772 0.90984 0.86313 0.86246 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.93 9.90 37.16 0.37 -0.57 16 2 C -0.09 -0.65 6.06 -27.88 -0.17 -0.82 16 3 C -0.08 -0.85 5.13 -104.62 -0.54 -1.39 16 4 C -0.12 -1.24 9.70 -39.59 -0.38 -1.62 16 5 C -0.10 -1.17 9.70 -39.58 -0.38 -1.55 16 6 C -0.07 -0.79 4.37 -104.62 -0.46 -1.24 16 7 C -0.10 -0.99 4.89 -29.03 -0.14 -1.14 16 8 C 0.53 7.70 7.87 -10.98 -0.09 7.62 16 9 O -0.53 -10.16 16.40 5.56 0.09 -10.07 16 10 N -0.63 -8.65 3.43 -171.55 -0.59 -9.24 16 11 C 0.12 1.20 6.52 -3.05 -0.02 1.18 16 12 C -0.13 -1.61 3.05 -89.24 -0.27 -1.88 16 13 H 0.09 1.32 7.92 -51.93 -0.41 0.91 16 14 C -0.10 -1.15 6.62 -25.66 -0.17 -1.32 16 15 C -0.14 -2.19 6.74 -23.33 -0.16 -2.34 16 16 C 0.20 3.60 3.45 -67.96 -0.23 3.36 16 17 H 0.06 1.18 8.10 -51.93 -0.42 0.76 16 18 N -0.74 -16.73 4.71 -53.45 -0.25 -16.98 16 19 C -0.24 -6.66 10.45 -15.06 -0.16 -6.82 16 20 H 0.09 2.67 8.06 -52.48 -0.42 2.24 16 21 C 0.01 0.19 5.50 -17.43 -0.10 0.09 16 22 N -0.93 -29.12 13.97 55.49 0.78 -28.34 16 23 Si 0.88 22.34 27.74 -169.99 -4.71 17.62 16 24 H -0.28 -7.14 7.11 56.52 0.40 -6.74 16 25 H -0.28 -6.78 6.52 56.52 0.37 -6.41 16 26 H -0.29 -7.55 7.11 56.52 0.40 -7.14 16 27 C -0.12 -1.80 2.29 -91.01 -0.21 -2.00 16 28 H 0.07 0.93 8.00 -51.93 -0.42 0.51 16 29 C 0.13 2.11 6.68 -4.11 -0.03 2.08 16 30 C -0.10 -1.12 9.70 -39.58 -0.38 -1.50 16 31 C -0.12 -1.20 9.70 -39.58 -0.38 -1.58 16 32 H 0.06 0.37 8.14 -51.93 -0.42 -0.06 16 33 H 0.05 0.36 8.14 -51.93 -0.42 -0.07 16 34 H 0.06 0.30 8.14 -51.93 -0.42 -0.12 16 35 H 0.07 0.50 8.09 -51.93 -0.42 0.08 16 36 H 0.07 0.51 8.09 -51.93 -0.42 0.09 16 37 H 0.12 1.05 8.06 -52.48 -0.42 0.63 16 38 H 0.12 1.25 8.06 -52.49 -0.42 0.83 16 39 H 0.10 0.85 7.85 -51.93 -0.41 0.44 16 40 H 0.10 0.78 8.08 -51.93 -0.42 0.36 16 41 H 0.08 0.63 7.58 -51.93 -0.39 0.23 16 42 H 0.07 0.63 8.14 -51.93 -0.42 0.20 16 43 H 0.06 0.67 8.14 -51.93 -0.42 0.25 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.21 16 45 H 0.08 1.37 7.98 -51.93 -0.41 0.96 16 46 H 0.06 0.81 8.14 -51.93 -0.42 0.39 16 47 H 0.36 8.21 4.60 -40.82 -0.19 8.02 16 48 H 0.26 7.76 8.31 -40.82 -0.34 7.42 16 49 H 0.07 1.43 7.21 -51.93 -0.37 1.06 16 50 H 0.07 1.18 8.14 -51.93 -0.42 0.75 16 51 H 0.12 1.11 8.06 -52.49 -0.42 0.69 16 52 H 0.12 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 412.52 15.07 6.22 6.22 Total: -1.00 -33.86 412.52 -11.32 -45.18 By element: Atomic # 1 Polarization: 16.00 SS G_CDS: -8.95 Total: 7.05 kcal Atomic # 6 Polarization: -7.54 SS G_CDS: -3.90 Total: -11.44 kcal Atomic # 7 Polarization: -54.50 SS G_CDS: -0.06 Total: -54.56 kcal Atomic # 8 Polarization: -10.16 SS G_CDS: 0.09 Total: -10.07 kcal Atomic # 14 Polarization: 22.34 SS G_CDS: -4.71 Total: 17.62 kcal Total LS contribution 6.22 Total: 6.22 kcal Total: -33.86 -11.32 -45.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026364673.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 54.371 kcal (2) G-P(sol) polarization free energy of solvation -33.859 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.512 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.323 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.183 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.188 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds