Wall clock time and date at job start Wed Apr 1 2020 03:00:21 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53010 * 1 3 3 C 1.50698 * 109.46744 * 2 1 4 4 C 1.38230 * 120.00361 * 90.00441 * 3 2 1 5 5 C 1.38230 * 120.00626 * 179.97438 * 4 3 2 6 6 C 1.38245 * 119.99541 * 359.97261 * 5 4 3 7 7 C 1.50701 * 119.99592 * 179.97438 * 6 5 4 8 8 C 1.50706 * 109.46866 * 90.00281 * 7 6 5 9 9 O 1.21281 * 119.99975 * 0.02562 * 8 7 6 10 10 N 1.34771 * 119.99876 * 179.97438 * 8 7 6 11 11 C 1.49626 * 126.07341 * 359.97438 * 10 8 7 12 12 C 1.51524 * 102.49417 * 154.35173 * 11 10 8 13 13 H 1.09004 * 111.12896 * 287.40520 * 12 11 10 14 14 C 1.51563 * 123.33650 * 151.63313 * 12 11 10 15 15 C 1.56340 * 101.81374 * 207.25437 * 14 12 11 16 16 C 1.56005 * 105.76715 * 25.43393 * 15 14 12 17 17 H 1.09004 * 110.52155 * 125.72484 * 16 15 14 18 18 N 1.46496 * 110.52375 * 248.32932 * 16 15 14 19 19 C 1.36934 * 120.00548 * 271.65929 * 18 16 15 20 20 H 1.08004 * 119.99288 * 0.02562 * 19 18 16 21 21 C 1.38805 * 120.00389 * 180.02562 * 19 18 16 22 22 N 1.31624 * 120.00257 * 180.02562 * 21 19 18 23 23 Si 1.86803 * 119.99929 * 359.97438 * 21 19 18 24 24 H 1.48498 * 109.47174 * 270.00277 * 23 21 19 25 25 H 1.48501 * 109.47062 * 30.00228 * 23 21 19 26 26 H 1.48499 * 109.46981 * 150.00382 * 23 21 19 27 27 C 1.49704 * 104.11342 * 7.03138 * 16 15 14 28 28 H 1.08993 * 108.54481 * 77.89513 * 27 16 15 29 29 C 1.49295 * 126.07071 * 179.97438 * 10 8 7 30 30 C 1.38229 * 120.00071 * 0.28176 * 6 5 4 31 31 C 1.38237 * 120.00169 * 359.52825 * 30 6 5 32 32 H 1.08993 * 109.46735 * 300.00093 * 1 2 3 33 33 H 1.08999 * 109.46825 * 60.00371 * 1 2 3 34 34 H 1.08999 * 109.46868 * 179.97438 * 1 2 3 35 35 H 1.09002 * 109.46764 * 239.99656 * 2 1 3 36 36 H 1.08999 * 109.46825 * 119.99629 * 2 1 3 37 37 H 1.08005 * 119.99982 * 359.97438 * 4 3 2 38 38 H 1.07997 * 120.00265 * 179.97438 * 5 4 3 39 39 H 1.08992 * 109.47658 * 330.00427 * 7 6 5 40 40 H 1.08998 * 109.46910 * 209.99777 * 7 6 5 41 41 H 1.08999 * 110.80000 * 36.09823 * 11 10 8 42 42 H 1.09002 * 110.96740 * 272.67778 * 11 10 8 43 43 H 1.09002 * 110.96439 * 89.12135 * 14 12 11 44 44 H 1.09005 * 110.96036 * 325.38361 * 14 12 11 45 45 H 1.09000 * 110.18882 * 266.36187 * 15 14 12 46 46 H 1.08993 * 110.25255 * 144.54430 * 15 14 12 47 47 H 0.96999 * 119.99694 * 91.66453 * 18 16 15 48 48 H 0.97001 * 119.99885 * 179.97438 * 22 21 19 49 49 H 1.08993 * 110.39598 * 292.41504 * 29 10 8 50 50 H 1.08995 * 110.39404 * 54.70185 * 29 10 8 51 51 H 1.08001 * 120.00350 * 179.72790 * 30 6 5 52 52 H 1.07995 * 120.00625 * 180.23666 * 31 30 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2628 2.0725 1.1971 5 6 2.7240 3.3756 1.1971 6 6 2.9553 4.0269 -0.0001 7 6 3.4575 5.4478 -0.0001 8 6 4.9646 5.4478 0.0011 9 8 5.5710 4.3975 0.0013 10 7 5.6384 6.6150 0.0008 11 6 5.0315 7.9827 -0.0011 12 6 6.1168 8.8238 0.6397 13 1 6.1880 8.6250 1.7091 14 6 6.3123 10.2974 0.3439 15 6 7.8402 10.4794 0.6207 16 6 8.4813 9.0744 0.4002 17 1 9.2976 9.1355 -0.3195 18 7 8.9586 8.5226 1.6706 19 6 10.2267 8.8022 2.1052 20 1 10.8748 9.4299 1.5116 21 6 10.6791 8.2789 3.3086 22 7 11.8978 8.5481 3.7266 23 14 9.5578 7.1938 4.3357 24 1 8.7816 8.0373 5.2797 25 1 8.6237 6.4619 3.4429 26 1 10.3768 6.2197 5.1009 27 6 7.3616 8.2438 -0.1453 28 1 7.2300 8.4885 -1.1992 29 6 7.1230 6.7730 0.0024 30 6 2.7198 3.3771 -1.1972 31 6 2.2624 2.0726 -1.1973 32 1 -0.3632 0.5138 0.8899 33 1 -0.3633 0.5138 -0.8900 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8934 -0.5139 -0.8900 36 1 1.8934 -0.5138 0.8900 37 1 2.0825 1.5635 2.1324 38 1 2.9036 3.8848 2.1324 39 1 3.0936 5.9618 0.8894 40 1 3.0949 5.9613 -0.8905 41 1 4.1213 8.0031 0.5981 42 1 4.8310 8.3190 -1.0184 43 1 5.7176 10.9129 1.0190 44 1 6.0750 10.5211 -0.6962 45 1 7.9998 10.8089 1.6473 46 1 8.2665 11.2010 -0.0761 47 1 8.3764 7.9591 2.2038 48 1 12.2138 8.1827 4.5678 49 1 7.5408 6.4266 0.9476 50 1 7.5641 6.2254 -0.8304 51 1 2.8963 3.8874 -2.1326 52 1 2.0821 1.5636 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026364673.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:21 Heat of formation + Delta-G solvation = -9.946600 kcal Electronic energy + Delta-G solvation = -29620.057903 eV Core-core repulsion = 25776.661768 eV Total energy + Delta-G solvation = -3843.396134 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.36 seconds Orbital eigenvalues (eV) -41.78268 -40.64801 -39.54092 -36.78452 -35.53944 -35.07218 -33.00679 -32.48980 -31.82491 -30.82947 -30.04231 -28.08253 -27.01152 -24.86517 -24.61613 -23.67569 -23.66302 -21.58350 -21.17690 -20.50852 -20.20318 -19.72618 -17.88191 -17.69117 -17.03469 -16.87176 -16.54014 -16.24397 -15.97306 -15.91721 -15.52500 -15.40430 -15.01560 -14.65674 -14.60812 -14.52375 -14.20812 -14.02286 -13.84105 -13.63283 -13.55992 -13.33146 -13.01337 -12.96233 -12.90252 -12.64912 -12.52498 -12.35661 -12.27321 -12.08219 -11.95558 -11.89700 -11.72263 -11.67193 -11.58009 -11.44956 -11.08065 -10.95925 -10.85146 -9.81218 -9.74071 -9.43385 -9.30163 -8.04865 -5.35501 0.37052 0.51423 1.29949 1.33186 1.38710 1.61576 1.84532 2.42736 2.82451 2.97988 3.27742 3.54957 3.62306 3.73306 3.85696 3.89856 3.94634 4.00984 4.12652 4.13817 4.18064 4.32130 4.42808 4.45092 4.48074 4.49127 4.55512 4.57795 4.63047 4.67849 4.71769 4.73077 4.75662 4.84094 4.93489 5.01814 5.03516 5.04083 5.07515 5.15202 5.19073 5.21534 5.24159 5.36919 5.37252 5.43663 5.50358 5.63504 5.66141 5.72214 5.79567 6.12119 6.20957 6.50329 7.06578 7.12924 7.84931 8.01284 9.16996 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.014508 B = 0.002467 C = 0.002212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1929.572434 B =11347.671803 C =12652.502174 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.092 4.092 4 C -0.131 4.131 5 C -0.120 4.120 6 C -0.086 4.086 7 C -0.085 4.085 8 C 0.521 3.479 9 O -0.589 6.589 10 N -0.625 5.625 11 C 0.120 3.880 12 C -0.116 4.116 13 H 0.061 0.939 14 C -0.082 4.082 15 C -0.140 4.140 16 C 0.189 3.811 17 H 0.050 0.950 18 N -0.747 5.747 19 C -0.218 4.218 20 H 0.063 0.937 21 C -0.062 4.062 22 N -0.982 5.982 23 Si 0.944 3.056 24 H -0.275 1.275 25 H -0.268 1.268 26 H -0.299 1.299 27 C -0.126 4.126 28 H 0.103 0.897 29 C 0.131 3.869 30 C -0.114 4.114 31 C -0.128 4.128 32 H 0.052 0.948 33 H 0.055 0.945 34 H 0.069 0.931 35 H 0.077 0.923 36 H 0.073 0.927 37 H 0.131 0.869 38 H 0.123 0.877 39 H 0.124 0.876 40 H 0.134 0.866 41 H 0.107 0.893 42 H 0.108 0.892 43 H 0.079 0.921 44 H 0.098 0.902 45 H 0.047 0.953 46 H 0.072 0.928 47 H 0.361 0.639 48 H 0.256 0.744 49 H 0.032 0.968 50 H 0.061 0.939 51 H 0.133 0.867 52 H 0.137 0.863 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.705 -6.554 -12.430 32.861 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.149 4.149 5 C -0.138 4.138 6 C -0.087 4.087 7 C -0.124 4.124 8 C 0.312 3.688 9 O -0.469 6.469 10 N -0.360 5.360 11 C 0.000 4.000 12 C -0.135 4.135 13 H 0.080 0.920 14 C -0.119 4.119 15 C -0.180 4.180 16 C 0.080 3.920 17 H 0.068 0.932 18 N -0.390 5.390 19 C -0.350 4.350 20 H 0.081 0.919 21 C -0.254 4.254 22 N -0.633 5.633 23 Si 0.773 3.227 24 H -0.201 1.201 25 H -0.194 1.194 26 H -0.226 1.226 27 C -0.145 4.145 28 H 0.121 0.879 29 C 0.009 3.991 30 C -0.132 4.132 31 C -0.146 4.146 32 H 0.071 0.929 33 H 0.074 0.926 34 H 0.088 0.912 35 H 0.096 0.904 36 H 0.092 0.908 37 H 0.149 0.851 38 H 0.141 0.859 39 H 0.142 0.858 40 H 0.152 0.848 41 H 0.125 0.875 42 H 0.126 0.874 43 H 0.098 0.902 44 H 0.117 0.883 45 H 0.066 0.934 46 H 0.090 0.910 47 H 0.194 0.806 48 H 0.065 0.935 49 H 0.051 0.949 50 H 0.079 0.921 51 H 0.151 0.849 52 H 0.155 0.845 Dipole moment (debyes) X Y Z Total from point charges -29.240 -7.100 -12.454 32.565 hybrid contribution 0.758 -0.803 1.318 1.720 sum -28.482 -7.903 -11.136 31.586 Atomic orbital electron populations 1.21715 0.93743 1.02426 1.02019 1.20591 0.96925 0.91427 1.03314 1.20195 0.98733 0.97182 0.93082 1.21210 1.00446 0.94821 0.98434 1.21202 0.99202 0.95573 0.97858 1.19507 0.99627 0.95733 0.93790 1.20687 0.88635 0.95433 1.07655 1.21006 0.91034 0.81599 0.75182 1.90719 1.71592 1.32540 1.52058 1.49963 1.06291 1.06957 1.72766 1.22070 0.96087 0.78794 1.03037 1.22677 0.94658 0.96980 0.99200 0.92016 1.21775 0.94413 0.92535 1.03219 1.23628 0.96017 0.97143 1.01240 1.20324 0.93426 0.92215 0.86028 0.93209 1.42823 1.12926 1.59932 1.23288 1.19073 0.90157 1.23509 1.02213 0.91890 1.25352 0.97646 1.02734 0.99622 1.69855 1.18483 1.51468 1.23527 0.85574 0.78694 0.79146 0.79259 1.20100 1.19377 1.22576 1.21931 0.97634 0.92781 1.02171 0.87898 1.20698 0.81154 0.96883 1.00366 1.21220 0.98800 0.95390 0.97776 1.21250 1.00196 0.94833 0.98324 0.92887 0.92582 0.91162 0.90437 0.90833 0.85100 0.85938 0.85816 0.84820 0.87452 0.87439 0.90228 0.88348 0.93360 0.90963 0.80601 0.93504 0.94930 0.92055 0.84941 0.84514 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.58 9.90 71.99 0.71 -0.86 16 2 C -0.09 -1.18 6.06 29.85 0.18 -1.00 16 3 C -0.09 -1.75 5.13 -19.87 -0.10 -1.85 16 4 C -0.13 -2.70 9.70 22.27 0.22 -2.49 16 5 C -0.12 -2.67 9.70 22.27 0.22 -2.46 16 6 C -0.09 -1.85 4.37 -19.86 -0.09 -1.94 16 7 C -0.09 -1.47 4.89 29.10 0.14 -1.32 16 8 C 0.52 14.30 7.87 87.66 0.69 14.99 16 9 O -0.59 -22.59 16.40 -3.03 -0.05 -22.64 16 10 N -0.63 -15.72 3.43 -815.05 -2.79 -18.52 16 11 C 0.12 1.87 6.52 85.29 0.56 2.43 16 12 C -0.12 -2.51 3.05 -9.90 -0.03 -2.54 16 13 H 0.06 1.69 7.92 -2.38 -0.02 1.68 16 14 C -0.08 -1.51 6.62 31.29 0.21 -1.31 16 15 C -0.14 -3.99 6.74 32.80 0.22 -3.77 16 16 C 0.19 6.59 3.45 44.98 0.16 6.75 16 17 H 0.05 1.86 8.10 -2.38 -0.02 1.84 16 18 N -0.75 -34.24 4.71 -323.02 -1.52 -35.76 16 19 C -0.22 -12.36 10.45 84.03 0.88 -11.49 16 20 H 0.06 3.87 8.06 -2.91 -0.02 3.84 16 21 C -0.06 -3.73 5.50 84.86 0.47 -3.26 16 22 N -0.98 -63.79 13.97 21.65 0.30 -63.48 16 23 Si 0.94 47.71 27.74 68.60 1.90 49.62 16 24 H -0.27 -13.34 7.11 99.48 0.71 -12.63 16 25 H -0.27 -12.94 6.52 99.48 0.65 -12.29 16 26 H -0.30 -15.42 7.11 99.48 0.71 -14.71 16 27 C -0.13 -3.43 2.29 -11.05 -0.03 -3.45 16 28 H 0.10 2.25 8.00 -2.39 -0.02 2.24 16 29 C 0.13 4.18 6.68 84.79 0.57 4.75 16 30 C -0.11 -2.30 9.70 22.27 0.22 -2.09 16 31 C -0.13 -2.44 9.70 22.27 0.22 -2.22 16 32 H 0.05 0.62 8.14 -2.39 -0.02 0.60 16 33 H 0.06 0.62 8.14 -2.39 -0.02 0.60 16 34 H 0.07 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.08 0.97 8.09 -2.39 -0.02 0.95 16 36 H 0.07 0.97 8.09 -2.39 -0.02 0.96 16 37 H 0.13 2.23 8.06 -2.91 -0.02 2.21 16 38 H 0.12 2.48 8.06 -2.91 -0.02 2.46 16 39 H 0.12 1.56 7.85 -2.39 -0.02 1.54 16 40 H 0.13 1.41 8.08 -2.39 -0.02 1.39 16 41 H 0.11 1.10 7.58 -2.39 -0.02 1.08 16 42 H 0.11 1.07 8.14 -2.39 -0.02 1.05 16 43 H 0.08 1.30 8.14 -2.39 -0.02 1.28 16 44 H 0.10 1.27 8.14 -2.38 -0.02 1.25 16 45 H 0.05 1.67 7.98 -2.39 -0.02 1.65 16 46 H 0.07 1.85 8.14 -2.39 -0.02 1.83 16 47 H 0.36 16.59 4.60 -92.71 -0.43 16.16 16 48 H 0.26 15.95 8.31 -92.71 -0.77 15.18 16 49 H 0.03 1.29 7.21 -2.39 -0.02 1.27 16 50 H 0.06 2.03 8.14 -2.39 -0.02 2.01 16 51 H 0.13 2.18 8.06 -2.91 -0.02 2.15 16 52 H 0.14 1.99 8.06 -2.91 -0.02 1.97 16 Total: -1.00 -79.44 412.52 3.64 -75.79 By element: Atomic # 1 Polarization: 27.72 SS G_CDS: 0.40 Total: 28.13 kcal Atomic # 6 Polarization: -18.53 SS G_CDS: 5.40 Total: -13.14 kcal Atomic # 7 Polarization: -113.75 SS G_CDS: -4.01 Total: -117.76 kcal Atomic # 8 Polarization: -22.59 SS G_CDS: -0.05 Total: -22.64 kcal Atomic # 14 Polarization: 47.71 SS G_CDS: 1.90 Total: 49.62 kcal Total: -79.44 3.64 -75.79 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026364673.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 65.847 kcal (2) G-P(sol) polarization free energy of solvation -79.436 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -13.589 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.643 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.793 kcal (6) G-S(sol) free energy of system = (1) + (5) -9.947 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.36 seconds