Wall clock time and date at job start Wed Apr 1 2020 03:00:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47048 * 2 1 4 4 C 1.38236 * 119.99621 * 90.00109 * 3 2 1 5 5 C 1.38235 * 119.99647 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99907 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99652 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47174 * 90.00281 * 7 6 5 9 9 O 1.21279 * 119.99653 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99865 * 179.97438 * 8 7 6 11 11 C 1.48340 * 128.20007 * 359.97438 * 10 8 7 12 12 C 1.54462 * 104.30855 * 138.23100 * 11 10 8 13 13 H 1.08997 * 111.93510 * 262.71676 * 12 11 10 14 14 C 1.54150 * 108.79502 * 138.54363 * 12 11 10 15 15 C 1.54834 * 104.34549 * 224.04728 * 14 12 11 16 16 C 1.54833 * 102.73807 * 38.22865 * 15 14 12 17 17 H 1.08995 * 110.46197 * 80.48587 * 16 15 14 18 18 N 1.46503 * 110.45742 * 202.92872 * 16 15 14 19 19 C 1.36925 * 120.00034 * 273.54320 * 18 16 15 20 20 H 1.08002 * 120.00598 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99952 * 180.02562 * 19 18 16 22 22 N 1.31610 * 120.00186 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00011 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46957 * 59.99563 * 23 21 19 25 25 H 1.48500 * 109.47347 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47009 * 300.00014 * 23 21 19 27 27 C 1.53826 * 104.39317 * 321.77661 * 16 15 14 28 28 H 1.08996 * 112.55936 * 260.69164 * 27 16 15 29 29 C 1.48343 * 128.19146 * 179.97438 * 10 8 7 30 30 C 1.38228 * 120.00279 * 0.25089 * 6 5 4 31 31 C 1.38228 * 119.99794 * 269.97924 * 3 2 1 32 32 H 1.09005 * 109.47193 * 299.99726 * 1 2 3 33 33 H 1.08998 * 109.47657 * 59.99695 * 1 2 3 34 34 H 1.08999 * 109.47158 * 179.97438 * 1 2 3 35 35 H 1.08996 * 109.47064 * 240.00056 * 2 1 3 36 36 H 1.09003 * 109.47271 * 120.00050 * 2 1 3 37 37 H 1.07998 * 120.00144 * 359.97438 * 4 3 2 38 38 H 1.07998 * 119.99792 * 179.97438 * 5 4 3 39 39 H 1.08997 * 109.47227 * 329.99885 * 7 6 5 40 40 H 1.09003 * 109.47065 * 209.99707 * 7 6 5 41 41 H 1.09003 * 110.46221 * 256.93830 * 11 10 8 42 42 H 1.08995 * 110.46272 * 19.52293 * 11 10 8 43 43 H 1.08995 * 110.45370 * 342.76067 * 14 12 11 44 44 H 1.08996 * 110.45599 * 105.20209 * 14 12 11 45 45 H 1.09004 * 110.75562 * 156.53679 * 15 14 12 46 46 H 1.08999 * 110.76031 * 279.73025 * 15 14 12 47 47 H 0.97007 * 119.99677 * 93.54603 * 18 16 15 48 48 H 0.96998 * 120.00660 * 180.02562 * 22 21 19 49 49 H 1.09002 * 110.46781 * 340.47329 * 29 10 8 50 50 H 1.08997 * 110.46296 * 102.93208 * 29 10 8 51 51 H 1.08000 * 120.00206 * 179.73026 * 30 6 5 52 52 H 1.07998 * 120.00810 * 359.97438 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7239 3.3755 1.1972 6 6 2.9543 4.0272 0.0001 7 6 3.4566 5.4480 0.0001 8 6 4.9637 5.4481 0.0001 9 8 5.5700 4.3977 0.0004 10 7 5.6375 6.6153 -0.0004 11 6 5.0865 7.9925 -0.0014 12 6 5.9808 8.7622 0.9954 13 1 5.5280 8.8239 1.9849 14 6 6.2855 10.1572 0.4146 15 6 7.7984 10.3590 0.6746 16 6 8.3804 8.9477 0.4160 17 1 8.5045 8.7767 -0.6533 18 7 9.6600 8.7863 1.1110 19 6 10.8219 9.1886 0.5085 20 1 10.7952 9.6246 -0.4793 21 6 12.0344 9.0352 1.1668 22 7 12.0671 8.5035 2.3703 23 14 13.6194 9.5848 0.3452 24 1 13.5490 11.0399 0.0573 25 1 14.7657 9.3134 1.2494 26 1 13.8036 8.8373 -0.9247 27 6 7.3269 7.9877 0.9946 28 1 7.5908 7.6274 1.9889 29 6 7.1058 6.8267 0.0000 30 6 2.7185 3.3776 -1.1970 31 6 2.2630 2.0723 -1.1971 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 2.0823 1.5634 2.1325 38 1 2.9035 3.8847 2.1325 39 1 3.0933 5.9618 0.8901 40 1 3.0933 5.9619 -0.8899 41 1 5.1596 8.4315 -0.9965 42 1 4.0513 7.9891 0.3395 43 1 6.0765 10.1784 -0.6549 44 1 5.7031 10.9203 0.9309 45 1 8.2172 11.0834 -0.0240 46 1 7.9754 10.6703 1.7040 47 1 9.6841 8.3943 1.9980 48 1 12.9142 8.3966 2.8305 49 1 7.6201 5.9286 0.3420 50 1 7.4507 7.1066 -0.9954 51 1 2.8943 3.8882 -2.1323 52 1 2.0838 1.5630 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026364674.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:26 Heat of formation + Delta-G solvation = -10.225649 kcal Electronic energy + Delta-G solvation = -29155.893848 eV Core-core repulsion = 25312.485613 eV Total energy + Delta-G solvation = -3843.408235 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -40.42473 -39.61598 -38.27687 -35.17020 -34.81049 -33.32980 -31.65571 -31.06178 -30.97906 -29.50192 -28.38113 -27.26775 -25.04167 -24.03737 -23.14636 -22.89457 -22.73331 -20.85192 -20.20219 -19.10660 -18.90274 -17.26667 -16.96143 -16.40779 -16.14309 -15.72765 -15.53656 -15.19463 -14.98229 -14.30604 -14.21984 -14.00517 -13.88526 -13.75527 -13.49719 -13.15691 -13.10295 -13.03196 -12.77117 -12.45062 -12.19125 -12.11714 -11.94320 -11.71904 -11.67205 -11.45137 -11.16895 -11.04820 -11.01028 -10.87826 -10.77303 -10.68420 -10.38520 -10.25991 -10.23636 -9.96876 -9.76940 -9.64486 -9.02417 -8.87838 -8.65466 -8.64289 -6.94969 -5.76558 -3.05390 1.15861 1.30192 2.68263 2.98741 3.44115 3.48755 3.49647 3.64094 4.42348 4.48989 4.56216 4.57717 4.62769 4.63896 4.78293 4.85668 4.89643 4.95399 5.05292 5.10905 5.22253 5.23646 5.30232 5.35569 5.42360 5.43451 5.45481 5.56128 5.58351 5.61550 5.65830 5.75559 5.80614 5.85400 5.92370 5.94129 5.95006 5.95426 6.05618 6.17109 6.24832 6.26704 6.32748 6.42000 6.45127 6.46593 6.55425 6.65946 6.79513 6.87173 7.04342 7.64653 7.69787 8.22621 8.41844 9.52936 10.10594 10.44582 11.45904 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.001971 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.605468 B =14205.013953 C =15085.962049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.085 4.085 3 C -0.085 4.085 4 C -0.117 4.117 5 C -0.101 4.101 6 C -0.068 4.068 7 C -0.097 4.097 8 C 0.532 3.468 9 O -0.534 6.534 10 N -0.627 5.627 11 C 0.104 3.896 12 C -0.102 4.102 13 H 0.084 0.916 14 C -0.117 4.117 15 C -0.142 4.142 16 C 0.184 3.816 17 H 0.055 0.945 18 N -0.721 5.721 19 C -0.240 4.240 20 H 0.070 0.930 21 C -0.012 4.012 22 N -0.932 5.932 23 Si 0.906 3.094 24 H -0.286 1.286 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.104 4.104 28 H 0.088 0.912 29 C 0.114 3.886 30 C -0.102 4.102 31 C -0.117 4.117 32 H 0.055 0.945 33 H 0.055 0.945 34 H 0.056 0.944 35 H 0.070 0.930 36 H 0.071 0.929 37 H 0.120 0.880 38 H 0.120 0.880 39 H 0.100 0.900 40 H 0.100 0.900 41 H 0.076 0.924 42 H 0.074 0.926 43 H 0.064 0.936 44 H 0.059 0.941 45 H 0.059 0.941 46 H 0.066 0.934 47 H 0.384 0.616 48 H 0.256 0.744 49 H 0.081 0.919 50 H 0.074 0.926 51 H 0.119 0.881 52 H 0.119 0.881 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -26.661 -7.995 -5.039 28.287 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.123 4.123 3 C -0.085 4.085 4 C -0.135 4.135 5 C -0.119 4.119 6 C -0.068 4.068 7 C -0.137 4.137 8 C 0.321 3.679 9 O -0.410 6.410 10 N -0.361 5.361 11 C -0.019 4.019 12 C -0.122 4.122 13 H 0.103 0.897 14 C -0.155 4.155 15 C -0.183 4.183 16 C 0.073 3.927 17 H 0.072 0.928 18 N -0.361 5.361 19 C -0.372 4.372 20 H 0.088 0.912 21 C -0.209 4.209 22 N -0.580 5.580 23 Si 0.737 3.263 24 H -0.213 1.213 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.125 4.125 28 H 0.106 0.894 29 C -0.008 4.008 30 C -0.120 4.120 31 C -0.135 4.135 32 H 0.074 0.926 33 H 0.074 0.926 34 H 0.075 0.925 35 H 0.089 0.911 36 H 0.089 0.911 37 H 0.138 0.862 38 H 0.138 0.862 39 H 0.119 0.881 40 H 0.118 0.882 41 H 0.094 0.906 42 H 0.092 0.908 43 H 0.082 0.918 44 H 0.078 0.922 45 H 0.077 0.923 46 H 0.084 0.916 47 H 0.218 0.782 48 H 0.066 0.934 49 H 0.099 0.901 50 H 0.092 0.908 51 H 0.137 0.863 52 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges -26.232 -8.652 -5.154 28.098 hybrid contribution 1.039 0.387 -0.070 1.111 sum -25.192 -8.265 -5.224 27.023 Atomic orbital electron populations 1.21743 0.94792 1.01593 1.02172 1.20541 0.96073 0.92805 1.02863 1.19868 0.99270 0.96100 0.93260 1.20950 1.00298 0.94738 0.97485 1.20960 0.98657 0.94921 0.97374 1.19266 0.99187 0.94747 0.93639 1.20641 0.92545 0.95507 1.05003 1.20093 0.89184 0.82230 0.76398 1.90744 1.70156 1.30377 1.49702 1.49277 1.08560 1.05313 1.72965 1.22756 0.97804 0.81582 0.99779 1.22772 0.95511 0.95352 0.98532 0.89717 1.22410 0.98115 0.95014 0.99995 1.23217 0.92788 1.00518 1.01734 1.21055 0.85339 0.90758 0.95517 0.92752 1.42434 1.00526 1.74000 1.19114 1.19179 0.84948 1.33443 0.99592 0.91247 1.24740 0.97692 1.01711 0.96713 1.69640 1.25351 1.49919 1.13119 0.86287 0.83394 0.78301 0.78312 1.21294 1.21728 1.21283 1.22997 0.94800 0.95080 0.99588 0.89377 1.22607 0.79374 0.99275 0.99529 1.20944 0.98843 0.94909 0.97308 1.20939 1.00413 0.94706 0.97460 0.92575 0.92601 0.92490 0.91092 0.91068 0.86217 0.86243 0.88130 0.88190 0.90611 0.90791 0.91782 0.92246 0.92260 0.91553 0.78183 0.93450 0.90054 0.90770 0.86306 0.86255 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.90 9.89 37.16 0.37 -0.53 16 2 C -0.09 -0.63 6.06 -27.88 -0.17 -0.80 16 3 C -0.08 -0.83 5.13 -104.62 -0.54 -1.37 16 4 C -0.12 -1.19 9.70 -39.58 -0.38 -1.57 16 5 C -0.10 -1.11 9.70 -39.58 -0.38 -1.49 16 6 C -0.07 -0.76 4.37 -104.63 -0.46 -1.22 16 7 C -0.10 -0.96 4.82 -29.03 -0.14 -1.10 16 8 C 0.53 7.54 7.92 -10.98 -0.09 7.45 16 9 O -0.53 -9.96 16.32 5.56 0.09 -9.86 16 10 N -0.63 -8.37 3.31 -168.89 -0.56 -8.93 16 11 C 0.10 1.05 6.46 -2.26 -0.01 1.04 16 12 C -0.10 -1.22 3.96 -88.03 -0.35 -1.57 16 13 H 0.08 0.96 8.14 -51.93 -0.42 0.53 16 14 C -0.12 -1.39 6.36 -25.16 -0.16 -1.55 16 15 C -0.14 -2.32 6.57 -24.80 -0.16 -2.48 16 16 C 0.18 3.43 3.03 -66.53 -0.20 3.23 16 17 H 0.05 1.04 7.15 -51.93 -0.37 0.67 16 18 N -0.72 -17.52 5.22 -52.07 -0.27 -17.80 16 19 C -0.24 -6.55 9.97 -15.06 -0.15 -6.70 16 20 H 0.07 1.83 7.83 -52.49 -0.41 1.42 16 21 C -0.01 -0.35 5.50 -17.43 -0.10 -0.45 16 22 N -0.93 -28.05 13.06 55.49 0.72 -27.33 16 23 Si 0.91 22.33 29.55 -169.99 -5.02 17.30 16 24 H -0.29 -6.92 7.11 56.52 0.40 -6.52 16 25 H -0.29 -7.27 7.11 56.52 0.40 -6.87 16 26 H -0.29 -6.96 7.11 56.52 0.40 -6.56 16 27 C -0.10 -1.64 3.62 -88.20 -0.32 -1.96 16 28 H 0.09 1.54 7.80 -51.93 -0.41 1.13 16 29 C 0.11 1.79 6.58 -2.25 -0.01 1.78 16 30 C -0.10 -1.10 9.70 -39.58 -0.38 -1.48 16 31 C -0.12 -1.17 9.70 -39.58 -0.38 -1.56 16 32 H 0.06 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.05 0.35 8.14 -51.93 -0.42 -0.08 16 34 H 0.06 0.29 8.14 -51.93 -0.42 -0.13 16 35 H 0.07 0.49 8.08 -51.93 -0.42 0.07 16 36 H 0.07 0.49 8.09 -51.93 -0.42 0.07 16 37 H 0.12 0.99 8.06 -52.49 -0.42 0.57 16 38 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 39 H 0.10 0.79 7.93 -51.93 -0.41 0.38 16 40 H 0.10 0.76 8.08 -51.93 -0.42 0.34 16 41 H 0.08 0.70 7.20 -51.93 -0.37 0.33 16 42 H 0.07 0.56 7.32 -51.93 -0.38 0.18 16 43 H 0.06 0.69 7.18 -51.93 -0.37 0.31 16 44 H 0.06 0.63 8.14 -51.93 -0.42 0.20 16 45 H 0.06 0.99 8.14 -51.93 -0.42 0.57 16 46 H 0.07 1.19 8.14 -51.93 -0.42 0.76 16 47 H 0.38 10.04 7.58 -40.82 -0.31 9.73 16 48 H 0.26 7.50 8.31 -40.82 -0.34 7.16 16 49 H 0.08 1.47 7.88 -51.93 -0.41 1.06 16 50 H 0.07 1.16 7.21 -51.93 -0.37 0.78 16 51 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 52 H 0.12 0.96 8.06 -52.49 -0.42 0.54 16 LS Contribution 414.72 15.07 6.25 6.25 Total: -1.00 -33.01 414.72 -11.68 -44.70 By element: Atomic # 1 Polarization: 16.88 SS G_CDS: -8.86 Total: 8.01 kcal Atomic # 6 Polarization: -8.32 SS G_CDS: -4.03 Total: -12.35 kcal Atomic # 7 Polarization: -53.95 SS G_CDS: -0.11 Total: -54.05 kcal Atomic # 8 Polarization: -9.96 SS G_CDS: 0.09 Total: -9.86 kcal Atomic # 14 Polarization: 22.33 SS G_CDS: -5.02 Total: 17.30 kcal Total LS contribution 6.25 Total: 6.25 kcal Total: -33.01 -11.68 -44.70 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026364674.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 34.471 kcal (2) G-P(sol) polarization free energy of solvation -33.014 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.457 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.682 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.696 kcal (6) G-S(sol) free energy of system = (1) + (5) -10.226 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds