Wall clock time and date at job start Wed Apr 1 2020 03:00:25 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.50703 * 109.47048 * 2 1 4 4 C 1.38236 * 119.99621 * 90.00109 * 3 2 1 5 5 C 1.38235 * 119.99647 * 179.97438 * 4 3 2 6 6 C 1.38235 * 119.99907 * 0.02562 * 5 4 3 7 7 C 1.50702 * 119.99652 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47174 * 90.00281 * 7 6 5 9 9 O 1.21279 * 119.99653 * 359.97438 * 8 7 6 10 10 N 1.34773 * 119.99865 * 179.97438 * 8 7 6 11 11 C 1.48340 * 128.20007 * 359.97438 * 10 8 7 12 12 C 1.54462 * 104.30855 * 138.23100 * 11 10 8 13 13 H 1.08997 * 111.93510 * 262.71676 * 12 11 10 14 14 C 1.54150 * 108.79502 * 138.54363 * 12 11 10 15 15 C 1.54834 * 104.34549 * 224.04728 * 14 12 11 16 16 C 1.54833 * 102.73807 * 38.22865 * 15 14 12 17 17 H 1.08995 * 110.46197 * 80.48587 * 16 15 14 18 18 N 1.46503 * 110.45742 * 202.92872 * 16 15 14 19 19 C 1.36925 * 120.00034 * 273.54320 * 18 16 15 20 20 H 1.08002 * 120.00598 * 359.97438 * 19 18 16 21 21 C 1.38819 * 119.99952 * 180.02562 * 19 18 16 22 22 N 1.31610 * 120.00186 * 359.97438 * 21 19 18 23 23 Si 1.86803 * 120.00011 * 180.02562 * 21 19 18 24 24 H 1.48499 * 109.46957 * 59.99563 * 23 21 19 25 25 H 1.48500 * 109.47347 * 180.02562 * 23 21 19 26 26 H 1.48497 * 109.47009 * 300.00014 * 23 21 19 27 27 C 1.53826 * 104.39317 * 321.77661 * 16 15 14 28 28 H 1.08996 * 112.55936 * 260.69164 * 27 16 15 29 29 C 1.48343 * 128.19146 * 179.97438 * 10 8 7 30 30 C 1.38228 * 120.00279 * 0.25089 * 6 5 4 31 31 C 1.38228 * 119.99794 * 269.97924 * 3 2 1 32 32 H 1.09005 * 109.47193 * 299.99726 * 1 2 3 33 33 H 1.08998 * 109.47657 * 59.99695 * 1 2 3 34 34 H 1.08999 * 109.47158 * 179.97438 * 1 2 3 35 35 H 1.08996 * 109.47064 * 240.00056 * 2 1 3 36 36 H 1.09003 * 109.47271 * 120.00050 * 2 1 3 37 37 H 1.07998 * 120.00144 * 359.97438 * 4 3 2 38 38 H 1.07998 * 119.99792 * 179.97438 * 5 4 3 39 39 H 1.08997 * 109.47227 * 329.99885 * 7 6 5 40 40 H 1.09003 * 109.47065 * 209.99707 * 7 6 5 41 41 H 1.09003 * 110.46221 * 256.93830 * 11 10 8 42 42 H 1.08995 * 110.46272 * 19.52293 * 11 10 8 43 43 H 1.08995 * 110.45370 * 342.76067 * 14 12 11 44 44 H 1.08996 * 110.45599 * 105.20209 * 14 12 11 45 45 H 1.09004 * 110.75562 * 156.53679 * 15 14 12 46 46 H 1.08999 * 110.76031 * 279.73025 * 15 14 12 47 47 H 0.97007 * 119.99677 * 93.54603 * 18 16 15 48 48 H 0.96998 * 120.00660 * 180.02562 * 22 21 19 49 49 H 1.09002 * 110.46781 * 340.47329 * 29 10 8 50 50 H 1.08997 * 110.46296 * 102.93208 * 29 10 8 51 51 H 1.08000 * 120.00206 * 179.73026 * 30 6 5 52 52 H 1.07998 * 120.00810 * 359.97438 * 31 3 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.2627 2.0724 1.1972 5 6 2.7239 3.3755 1.1972 6 6 2.9543 4.0272 0.0001 7 6 3.4566 5.4480 0.0001 8 6 4.9637 5.4481 0.0001 9 8 5.5700 4.3977 0.0004 10 7 5.6375 6.6153 -0.0004 11 6 5.0865 7.9925 -0.0014 12 6 5.9808 8.7622 0.9954 13 1 5.5280 8.8239 1.9849 14 6 6.2855 10.1572 0.4146 15 6 7.7984 10.3590 0.6746 16 6 8.3804 8.9477 0.4160 17 1 8.5045 8.7767 -0.6533 18 7 9.6600 8.7863 1.1110 19 6 10.8219 9.1886 0.5085 20 1 10.7952 9.6246 -0.4793 21 6 12.0344 9.0352 1.1668 22 7 12.0671 8.5035 2.3703 23 14 13.6194 9.5848 0.3452 24 1 13.5490 11.0399 0.0573 25 1 14.7657 9.3134 1.2494 26 1 13.8036 8.8373 -0.9247 27 6 7.3269 7.9877 0.9946 28 1 7.5908 7.6274 1.9889 29 6 7.1058 6.8267 0.0000 30 6 2.7185 3.3776 -1.1970 31 6 2.2630 2.0723 -1.1971 32 1 -0.3634 0.5138 0.8900 33 1 -0.3634 0.5139 -0.8899 34 1 -0.3633 -1.0277 -0.0005 35 1 1.8933 -0.5138 -0.8900 36 1 1.8933 -0.5139 0.8900 37 1 2.0823 1.5634 2.1325 38 1 2.9035 3.8847 2.1325 39 1 3.0933 5.9618 0.8901 40 1 3.0933 5.9619 -0.8899 41 1 5.1596 8.4315 -0.9965 42 1 4.0513 7.9891 0.3395 43 1 6.0765 10.1784 -0.6549 44 1 5.7031 10.9203 0.9309 45 1 8.2172 11.0834 -0.0240 46 1 7.9754 10.6703 1.7040 47 1 9.6841 8.3943 1.9980 48 1 12.9142 8.3966 2.8305 49 1 7.6201 5.9286 0.3420 50 1 7.4507 7.1066 -0.9954 51 1 2.8943 3.8882 -2.1323 52 1 2.0838 1.5630 -2.1325 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026364674.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:00:25 Heat of formation + Delta-G solvation = -28.164212 kcal Electronic energy + Delta-G solvation = -29156.671722 eV Core-core repulsion = 25312.485613 eV Total energy + Delta-G solvation = -3844.186109 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -41.49335 -40.48982 -39.39380 -36.64627 -35.52106 -34.97109 -32.70453 -32.42685 -31.80340 -30.69794 -29.71247 -28.09048 -26.60156 -24.98162 -24.63582 -23.74745 -23.64221 -21.68618 -21.39685 -20.34733 -20.00692 -19.04969 -18.17013 -17.24217 -17.21374 -16.88044 -16.45653 -16.29876 -16.03829 -15.76812 -15.52760 -14.99923 -14.84522 -14.65017 -14.56478 -14.45536 -14.21948 -13.85188 -13.78862 -13.65890 -13.26680 -12.99822 -12.93619 -12.91470 -12.84523 -12.58314 -12.52508 -12.35718 -12.09733 -12.06224 -11.94797 -11.71370 -11.66481 -11.65372 -11.53417 -11.41704 -11.38236 -10.96772 -10.80223 -9.79257 -9.75842 -9.41355 -8.96578 -7.93625 -5.21325 0.39198 0.53577 1.45954 1.48946 1.54774 1.62840 1.97048 2.56389 2.86162 3.35549 3.46495 3.56608 3.69666 3.77989 3.89119 3.93561 4.02898 4.10657 4.14971 4.19862 4.25597 4.38020 4.45887 4.49550 4.50948 4.52666 4.58349 4.59601 4.64001 4.67256 4.73163 4.75423 4.77303 4.85942 4.95633 5.05345 5.07375 5.08836 5.11545 5.16313 5.21243 5.23473 5.30291 5.38546 5.43535 5.49173 5.52374 5.54740 5.64959 5.68187 5.74224 6.14310 6.28739 6.62188 7.15778 7.34097 8.12500 8.33695 9.29900 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018894 B = 0.001971 C = 0.001856 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.605468 B =14205.013953 C =15085.962049 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C -0.085 4.085 3 C -0.092 4.092 4 C -0.130 4.130 5 C -0.118 4.118 6 C -0.087 4.087 7 C -0.085 4.085 8 C 0.527 3.473 9 O -0.590 6.590 10 N -0.624 5.624 11 C 0.106 3.894 12 C -0.093 4.093 13 H 0.099 0.901 14 C -0.101 4.101 15 C -0.138 4.138 16 C 0.175 3.825 17 H 0.050 0.950 18 N -0.736 5.736 19 C -0.236 4.236 20 H 0.077 0.923 21 C -0.079 4.079 22 N -0.972 5.972 23 Si 0.970 3.030 24 H -0.276 1.276 25 H -0.298 1.298 26 H -0.280 1.280 27 C -0.101 4.101 28 H 0.062 0.938 29 C 0.117 3.883 30 C -0.116 4.116 31 C -0.129 4.129 32 H 0.053 0.947 33 H 0.054 0.946 34 H 0.069 0.931 35 H 0.076 0.924 36 H 0.074 0.926 37 H 0.133 0.867 38 H 0.126 0.874 39 H 0.127 0.873 40 H 0.131 0.869 41 H 0.095 0.905 42 H 0.116 0.884 43 H 0.086 0.914 44 H 0.085 0.915 45 H 0.053 0.947 46 H 0.046 0.954 47 H 0.370 0.630 48 H 0.249 0.751 49 H 0.043 0.957 50 H 0.075 0.925 51 H 0.130 0.870 52 H 0.135 0.865 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.779 -6.779 -6.487 31.222 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C -0.123 4.123 3 C -0.092 4.092 4 C -0.148 4.148 5 C -0.136 4.136 6 C -0.087 4.087 7 C -0.124 4.124 8 C 0.318 3.682 9 O -0.470 6.470 10 N -0.358 5.358 11 C -0.015 4.015 12 C -0.113 4.113 13 H 0.117 0.883 14 C -0.139 4.139 15 C -0.179 4.179 16 C 0.066 3.934 17 H 0.068 0.932 18 N -0.375 5.375 19 C -0.368 4.368 20 H 0.094 0.906 21 C -0.271 4.271 22 N -0.623 5.623 23 Si 0.800 3.200 24 H -0.202 1.202 25 H -0.225 1.225 26 H -0.206 1.206 27 C -0.121 4.121 28 H 0.081 0.919 29 C -0.006 4.006 30 C -0.134 4.134 31 C -0.147 4.147 32 H 0.072 0.928 33 H 0.073 0.927 34 H 0.088 0.912 35 H 0.094 0.906 36 H 0.093 0.907 37 H 0.151 0.849 38 H 0.144 0.856 39 H 0.145 0.855 40 H 0.149 0.851 41 H 0.113 0.887 42 H 0.134 0.866 43 H 0.105 0.895 44 H 0.104 0.896 45 H 0.072 0.928 46 H 0.064 0.936 47 H 0.202 0.798 48 H 0.058 0.942 49 H 0.062 0.938 50 H 0.093 0.907 51 H 0.148 0.852 52 H 0.153 0.847 Dipole moment (debyes) X Y Z Total from point charges -29.418 -7.382 -6.645 31.050 hybrid contribution 1.980 -0.039 0.358 2.012 sum -27.438 -7.421 -6.287 29.111 Atomic orbital electron populations 1.21711 0.93757 1.02407 1.02017 1.20589 0.96912 0.91460 1.03301 1.20192 0.98747 0.97169 0.93106 1.21220 1.00361 0.94844 0.98384 1.21208 0.99023 0.95499 0.97854 1.19506 0.99650 0.95734 0.93805 1.20678 0.88609 0.95447 1.07683 1.20960 0.90929 0.81373 0.74947 1.90720 1.71607 1.32464 1.52248 1.49341 1.07258 1.06842 1.72311 1.23008 0.99230 0.78911 1.00356 1.22773 0.93275 0.95031 1.00211 0.88274 1.22356 0.94345 0.95381 1.01818 1.23041 0.96422 0.98058 1.00355 1.21346 0.83947 0.93284 0.94823 0.93157 1.42665 1.02051 1.73994 1.18807 1.19590 0.86039 1.31596 0.99564 0.90558 1.25547 1.00970 1.03055 0.97546 1.69809 1.25466 1.52235 1.14759 0.85252 0.79300 0.78285 0.77195 1.20162 1.22471 1.20640 1.22812 0.96431 0.95014 0.97873 0.91941 1.22366 0.81434 0.97577 0.99247 1.21217 0.98924 0.95420 0.97809 1.21233 1.00301 0.94824 0.98339 0.92795 0.92679 0.91191 0.90572 0.90729 0.84939 0.85595 0.85456 0.85119 0.88672 0.86634 0.89540 0.89593 0.92826 0.93557 0.79843 0.94216 0.93840 0.90712 0.85198 0.84707 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.54 9.89 71.98 0.71 -0.83 16 2 C -0.09 -1.16 6.06 29.85 0.18 -0.98 16 3 C -0.09 -1.72 5.13 -19.87 -0.10 -1.83 16 4 C -0.13 -2.57 9.70 22.27 0.22 -2.36 16 5 C -0.12 -2.50 9.70 22.27 0.22 -2.28 16 6 C -0.09 -1.82 4.37 -19.87 -0.09 -1.91 16 7 C -0.09 -1.43 4.82 29.10 0.14 -1.29 16 8 C 0.53 14.27 7.92 87.66 0.69 14.96 16 9 O -0.59 -22.51 16.32 -3.02 -0.05 -22.56 16 10 N -0.62 -15.56 3.31 -806.62 -2.67 -18.23 16 11 C 0.11 1.67 6.46 86.52 0.56 2.23 16 12 C -0.09 -1.93 3.96 -9.12 -0.04 -1.97 16 13 H 0.10 1.85 8.14 -2.39 -0.02 1.83 16 14 C -0.10 -2.00 6.36 31.61 0.20 -1.80 16 15 C -0.14 -4.36 6.57 31.85 0.21 -4.15 16 16 C 0.17 6.56 3.03 45.90 0.14 6.70 16 17 H 0.05 1.93 7.15 -2.39 -0.02 1.91 16 18 N -0.74 -37.09 5.22 -318.66 -1.66 -38.75 16 19 C -0.24 -13.12 9.97 84.04 0.84 -12.28 16 20 H 0.08 4.04 7.83 -2.91 -0.02 4.02 16 21 C -0.08 -4.61 5.50 84.87 0.47 -4.14 16 22 N -0.97 -60.65 13.06 21.65 0.28 -60.37 16 23 Si 0.97 46.78 29.55 68.60 2.03 48.81 16 24 H -0.28 -12.67 7.11 99.48 0.71 -11.96 16 25 H -0.30 -14.59 7.11 99.48 0.71 -13.89 16 26 H -0.28 -13.07 7.11 99.48 0.71 -12.37 16 27 C -0.10 -3.19 3.62 -9.22 -0.03 -3.22 16 28 H 0.06 2.29 7.80 -2.39 -0.02 2.27 16 29 C 0.12 3.74 6.58 86.53 0.57 4.31 16 30 C -0.12 -2.36 9.70 22.27 0.22 -2.14 16 31 C -0.13 -2.47 9.70 22.27 0.22 -2.25 16 32 H 0.05 0.61 8.14 -2.38 -0.02 0.59 16 33 H 0.05 0.60 8.14 -2.39 -0.02 0.58 16 34 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 35 H 0.08 0.95 8.08 -2.39 -0.02 0.93 16 36 H 0.07 0.95 8.09 -2.39 -0.02 0.93 16 37 H 0.13 2.12 8.06 -2.91 -0.02 2.10 16 38 H 0.13 2.35 8.06 -2.91 -0.02 2.33 16 39 H 0.13 1.46 7.93 -2.39 -0.02 1.44 16 40 H 0.13 1.40 8.08 -2.39 -0.02 1.38 16 41 H 0.10 1.23 7.20 -2.39 -0.02 1.21 16 42 H 0.12 0.98 7.32 -2.39 -0.02 0.96 16 43 H 0.09 1.40 7.18 -2.39 -0.02 1.38 16 44 H 0.09 1.36 8.14 -2.39 -0.02 1.34 16 45 H 0.05 1.73 8.14 -2.39 -0.02 1.71 16 46 H 0.05 1.64 8.14 -2.39 -0.02 1.62 16 47 H 0.37 20.40 7.58 -92.70 -0.70 19.69 16 48 H 0.25 15.18 8.31 -92.71 -0.77 14.41 16 49 H 0.04 1.69 7.88 -2.39 -0.02 1.67 16 50 H 0.07 2.35 7.21 -2.39 -0.02 2.33 16 51 H 0.13 2.21 8.06 -2.91 -0.02 2.19 16 52 H 0.14 2.01 8.06 -2.91 -0.02 1.99 16 Total: -1.00 -76.62 414.72 3.43 -73.18 By element: Atomic # 1 Polarization: 32.96 SS G_CDS: 0.19 Total: 33.15 kcal Atomic # 6 Polarization: -20.54 SS G_CDS: 5.32 Total: -15.23 kcal Atomic # 7 Polarization: -113.30 SS G_CDS: -4.05 Total: -117.36 kcal Atomic # 8 Polarization: -22.51 SS G_CDS: -0.05 Total: -22.56 kcal Atomic # 14 Polarization: 46.78 SS G_CDS: 2.03 Total: 48.81 kcal Total: -76.62 3.43 -73.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026364674.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 45.017 kcal (2) G-P(sol) polarization free energy of solvation -76.615 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -31.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.181 kcal (6) G-S(sol) free energy of system = (1) + (5) -28.164 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.39 seconds