Wall clock time and date at job start Wed Apr 1 2020 03:26:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46726 * 2 1 4 4 C 1.50690 * 109.47117 * 119.99839 * 2 1 3 5 5 O 1.21291 * 120.00328 * 240.41581 * 4 2 1 6 6 N 1.34785 * 120.00149 * 60.41954 * 4 2 1 7 7 C 1.49218 * 126.05432 * 355.36208 * 6 4 2 8 8 C 1.50348 * 104.85539 * 172.93284 * 7 6 4 9 9 H 1.09005 * 110.04613 * 278.95070 * 8 7 6 10 10 C 1.50993 * 125.56847 * 144.33491 * 8 7 6 11 11 C 1.56400 * 101.59191 * 203.97243 * 10 8 7 12 12 C 1.54938 * 105.62333 * 24.46796 * 11 10 8 13 13 H 1.08997 * 109.34209 * 126.78383 * 12 11 10 14 14 N 1.46497 * 111.17502 * 249.12417 * 12 11 10 15 15 C 1.36932 * 119.99810 * 270.73338 * 14 12 11 16 16 H 1.08002 * 120.00413 * 359.97438 * 15 14 12 17 17 C 1.38813 * 119.99780 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00007 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00086 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47135 * 89.99858 * 19 17 15 21 21 H 1.48506 * 109.46940 * 210.00069 * 19 17 15 22 22 H 1.48502 * 109.47116 * 329.99600 * 19 17 15 23 23 C 1.50305 * 104.63881 * 8.41570 * 12 11 10 24 24 H 1.09000 * 110.00147 * 79.41579 * 23 12 11 25 25 C 1.49697 * 126.05925 * 175.35978 * 6 4 2 26 26 C 1.50697 * 109.47120 * 240.00168 * 2 1 3 27 27 C 1.38235 * 120.00052 * 232.85334 * 26 2 1 28 28 C 1.38230 * 120.00309 * 179.78998 * 27 26 2 29 29 C 1.38236 * 119.99724 * 0.46296 * 28 27 26 30 30 C 1.38241 * 120.00241 * 359.76696 * 29 28 27 31 31 C 1.38232 * 119.99627 * 0.02701 * 30 29 28 32 32 H 1.08998 * 109.47079 * 292.71416 * 1 2 3 33 33 H 1.09003 * 109.46735 * 52.71550 * 1 2 3 34 34 H 1.08996 * 109.46466 * 172.71080 * 1 2 3 35 35 H 1.08998 * 109.46709 * 174.22729 * 3 2 1 36 36 H 1.09000 * 109.46951 * 294.22850 * 3 2 1 37 37 H 1.09002 * 109.47193 * 54.22992 * 3 2 1 38 38 H 1.09000 * 110.35841 * 291.77604 * 7 6 4 39 39 H 1.08997 * 110.36035 * 54.08742 * 7 6 4 40 40 H 1.09001 * 111.00446 * 322.04972 * 10 8 7 41 41 H 1.08999 * 111.00236 * 85.86351 * 10 8 7 42 42 H 1.09011 * 110.18616 * 144.09864 * 11 10 8 43 43 H 1.08999 * 110.18849 * 265.85980 * 11 10 8 44 44 H 0.97002 * 120.00087 * 90.73204 * 14 12 11 45 45 H 0.97003 * 120.00428 * 180.02562 * 18 17 15 46 46 H 1.08993 * 110.84588 * 36.67040 * 25 6 4 47 47 H 1.09004 * 110.84321 * 273.05744 * 25 6 4 48 48 H 1.08000 * 119.99518 * 359.97438 * 27 26 2 49 49 H 1.07995 * 120.00422 * 180.25039 * 28 27 26 50 50 H 1.07999 * 120.00261 * 179.79052 * 29 28 27 51 51 H 1.07997 * 119.99879 * 179.97438 * 30 29 28 52 52 H 1.07995 * 120.00049 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.7234 -0.1187 2.0326 6 7 1.7138 -2.0032 1.4395 7 6 0.7993 -2.8294 0.5983 8 6 0.9234 -4.2231 1.1486 9 1 1.8177 -4.7034 0.7513 10 6 -0.1959 -5.2318 1.2459 11 6 0.3139 -6.1567 2.3996 12 6 1.2817 -5.2837 3.2374 13 1 0.9791 -5.3121 4.2841 14 7 2.6665 -5.7381 3.0898 15 6 3.1680 -6.6915 3.9352 16 1 2.5427 -7.1082 4.7110 17 6 4.4801 -7.1224 3.7950 18 7 4.9623 -8.0384 4.6079 19 14 5.5618 -6.4012 2.4537 20 1 6.2719 -5.2074 2.9788 21 1 6.5548 -7.4165 2.0193 22 1 4.7188 -6.0066 1.2966 23 6 1.1207 -3.8968 2.6807 24 1 0.2177 -3.4365 3.0818 25 6 2.2146 -2.8646 2.5567 26 6 2.0324 -0.7104 -1.2305 27 6 2.9443 -1.7421 -1.1090 28 6 3.4018 -2.3966 -2.2373 29 6 2.9547 -2.0130 -3.4879 30 6 2.0463 -0.9781 -3.6097 31 6 1.5856 -0.3265 -2.4811 32 1 -0.3633 0.3968 0.9479 33 1 -0.3633 0.6226 -0.8177 34 1 -0.3632 -1.0194 -0.1304 35 1 3.1250 1.4443 0.1034 36 1 1.7634 1.9257 -0.9371 37 1 1.5947 1.9853 0.8338 38 1 -0.2270 -2.4744 0.6926 39 1 1.1162 -2.8037 -0.4442 40 1 -1.1345 -4.7490 1.5182 41 1 -0.3014 -5.7894 0.3153 42 1 -0.5245 -6.4960 3.0080 43 1 0.8493 -7.0119 1.9873 44 1 3.2283 -5.3636 2.3933 45 1 5.8793 -8.3394 4.5102 46 1 2.3109 -2.2889 3.4771 47 1 3.1620 -3.3333 2.2902 48 1 3.2971 -2.0387 -0.1323 49 1 4.1112 -3.2053 -2.1422 50 1 3.3146 -2.5221 -4.3697 51 1 1.6973 -0.6782 -4.5868 52 1 0.8763 0.4823 -2.5762 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026412783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:40 Heat of formation + Delta-G solvation = 28.835909 kcal Electronic energy + Delta-G solvation = -31846.640287 eV Core-core repulsion = 28004.925889 eV Total energy + Delta-G solvation = -3841.714399 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -41.31959 -39.77293 -38.50259 -35.45729 -35.28267 -33.40345 -31.23170 -31.12766 -30.00546 -29.60484 -28.87111 -27.43624 -25.76172 -24.58566 -23.10747 -22.79913 -22.63481 -21.07127 -20.08515 -19.10591 -18.78222 -17.99357 -17.40858 -16.51829 -16.22705 -15.40086 -15.26014 -15.17193 -14.65781 -14.54677 -14.31839 -14.06877 -13.84838 -13.78527 -13.72242 -13.31046 -12.95240 -12.76900 -12.60931 -12.45754 -12.31357 -12.26900 -12.11762 -11.93274 -11.86355 -11.53675 -11.30527 -11.24435 -11.08510 -10.95407 -10.88452 -10.68589 -10.45167 -10.36866 -10.14953 -9.82993 -9.61691 -9.55271 -9.08097 -8.96856 -8.88915 -8.58886 -7.31033 -5.79842 -3.15592 1.12300 1.20465 2.60465 2.85241 3.32937 3.36874 3.43141 3.56488 4.02105 4.29187 4.33279 4.55785 4.71462 4.78288 4.79622 4.83075 4.86824 4.95568 5.09302 5.13864 5.25823 5.30585 5.33747 5.37829 5.40601 5.46207 5.50005 5.54101 5.55859 5.59392 5.63434 5.68195 5.77725 5.82891 5.84374 5.86761 5.91567 6.00819 6.06355 6.11026 6.16491 6.26676 6.27312 6.31246 6.35112 6.37863 6.38688 6.50212 6.69748 6.78179 6.92234 7.51629 7.96758 8.14436 8.39452 9.17158 9.89723 10.08814 11.38568 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.003865 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.194151 B = 7242.428987 C = 7728.990700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.037 4.037 3 C -0.123 4.123 4 C 0.540 3.460 5 O -0.538 6.538 6 N -0.622 5.622 7 C 0.112 3.888 8 C -0.130 4.130 9 H 0.084 0.916 10 C -0.096 4.096 11 C -0.145 4.145 12 C 0.200 3.800 13 H 0.063 0.937 14 N -0.742 5.742 15 C -0.244 4.244 16 H 0.092 0.908 17 C 0.008 3.992 18 N -0.933 5.933 19 Si 0.878 3.122 20 H -0.283 1.283 21 H -0.290 1.290 22 H -0.278 1.278 23 C -0.122 4.122 24 H 0.081 0.919 25 C 0.128 3.872 26 C -0.072 4.072 27 C -0.114 4.114 28 C -0.115 4.115 29 C -0.120 4.120 30 C -0.120 4.120 31 C -0.110 4.110 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.065 0.935 36 H 0.062 0.938 37 H 0.065 0.935 38 H 0.072 0.928 39 H 0.079 0.921 40 H 0.063 0.937 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.076 0.924 44 H 0.360 0.640 45 H 0.259 0.741 46 H 0.082 0.918 47 H 0.074 0.926 48 H 0.126 0.874 49 H 0.123 0.877 50 H 0.121 0.879 51 H 0.122 0.878 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.386 15.844 -16.638 26.101 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.041 4.041 3 C -0.181 4.181 4 C 0.328 3.672 5 O -0.415 6.415 6 N -0.357 5.357 7 C -0.010 4.010 8 C -0.149 4.149 9 H 0.102 0.898 10 C -0.134 4.134 11 C -0.185 4.185 12 C 0.089 3.911 13 H 0.081 0.919 14 N -0.384 5.384 15 C -0.373 4.373 16 H 0.110 0.890 17 C -0.188 4.188 18 N -0.580 5.580 19 Si 0.708 3.292 20 H -0.210 1.210 21 H -0.217 1.217 22 H -0.205 1.205 23 C -0.142 4.142 24 H 0.099 0.901 25 C 0.008 3.992 26 C -0.073 4.073 27 C -0.132 4.132 28 C -0.133 4.133 29 C -0.138 4.138 30 C -0.138 4.138 31 C -0.128 4.128 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.084 0.916 36 H 0.081 0.919 37 H 0.084 0.916 38 H 0.090 0.910 39 H 0.097 0.903 40 H 0.081 0.919 41 H 0.080 0.920 42 H 0.077 0.923 43 H 0.095 0.905 44 H 0.194 0.806 45 H 0.070 0.930 46 H 0.100 0.900 47 H 0.092 0.908 48 H 0.144 0.856 49 H 0.141 0.859 50 H 0.139 0.861 51 H 0.140 0.860 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -11.929 16.084 -16.008 25.637 hybrid contribution 0.958 0.229 -1.021 1.418 sum -10.971 16.313 -17.029 26.009 Atomic orbital electron populations 1.22072 0.91873 1.03563 1.02873 1.19743 0.97347 0.96436 0.90525 1.21684 1.02357 0.92096 1.01929 1.19994 0.80000 0.80284 0.86947 1.90715 1.38801 1.65142 1.46793 1.49888 1.46964 1.10003 1.28799 1.21623 0.93689 0.90507 0.95143 1.22261 1.01502 0.94104 0.97036 0.89796 1.21723 0.96219 0.96182 0.99280 1.23653 0.99099 0.99415 0.96362 1.19875 0.85716 0.88127 0.97358 0.91930 1.42775 1.08454 1.48553 1.38652 1.19086 0.95914 1.13038 1.09297 0.89050 1.24639 0.96927 0.98701 0.98540 1.69688 1.15781 1.32966 1.39579 0.86663 0.81141 0.78806 0.82582 1.20960 1.21683 1.20480 1.22507 0.98801 0.96536 0.96392 0.90075 1.21444 0.97062 0.90959 0.89774 1.19504 0.97678 0.96449 0.93627 1.21357 0.96663 0.95620 0.99554 1.21196 0.99856 0.99823 0.92405 1.21180 0.97719 0.97452 0.97439 1.21099 0.97862 0.96521 0.98335 1.20886 1.00282 1.00073 0.91547 0.91729 0.91248 0.90955 0.91614 0.91881 0.91599 0.91034 0.90279 0.91862 0.91981 0.92264 0.90478 0.80624 0.93034 0.89996 0.90764 0.85609 0.85890 0.86105 0.86040 0.85957 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.25 7.75 37.16 0.29 -0.97 16 2 C -0.04 -0.41 0.59 -156.81 -0.09 -0.50 16 3 C -0.12 -1.28 7.77 37.16 0.29 -1.00 16 4 C 0.54 7.87 5.27 -10.99 -0.06 7.82 16 5 O -0.54 -9.85 16.22 5.55 0.09 -9.76 16 6 N -0.62 -8.61 2.30 -171.56 -0.39 -9.00 16 7 C 0.11 1.29 4.64 -3.86 -0.02 1.27 16 8 C -0.13 -1.71 2.72 -90.27 -0.25 -1.95 16 9 H 0.08 1.29 7.60 -51.93 -0.39 0.89 16 10 C -0.10 -1.16 6.72 -25.91 -0.17 -1.34 16 11 C -0.14 -2.22 6.74 -23.88 -0.16 -2.39 16 12 C 0.20 3.54 3.34 -68.25 -0.23 3.31 16 13 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 14 N -0.74 -16.49 4.62 -53.74 -0.25 -16.74 16 15 C -0.24 -6.61 10.44 -15.06 -0.16 -6.77 16 16 H 0.09 2.66 8.06 -52.49 -0.42 2.24 16 17 C 0.01 0.22 5.50 -17.43 -0.10 0.13 16 18 N -0.93 -28.94 13.97 55.49 0.78 -28.16 16 19 Si 0.88 21.90 27.74 -169.99 -4.71 17.18 16 20 H -0.28 -7.13 7.11 56.52 0.40 -6.73 16 21 H -0.29 -7.38 7.11 56.52 0.40 -6.97 16 22 H -0.28 -6.48 6.52 56.52 0.37 -6.11 16 23 C -0.12 -1.80 2.65 -90.33 -0.24 -2.04 16 24 H 0.08 1.09 8.14 -51.93 -0.42 0.67 16 25 C 0.13 2.05 6.54 -3.31 -0.02 2.03 16 26 C -0.07 -0.78 3.67 -104.62 -0.38 -1.16 16 27 C -0.11 -1.40 6.70 -39.59 -0.27 -1.67 16 28 C -0.11 -1.28 10.05 -39.58 -0.40 -1.68 16 29 C -0.12 -1.13 10.05 -39.58 -0.40 -1.52 16 30 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 31 C -0.11 -0.98 8.74 -39.58 -0.35 -1.32 16 32 H 0.06 0.57 8.13 -51.93 -0.42 0.14 16 33 H 0.07 0.46 7.32 -51.93 -0.38 0.08 16 34 H 0.07 0.60 4.87 -51.93 -0.25 0.35 16 35 H 0.06 0.80 7.93 -51.93 -0.41 0.39 16 36 H 0.06 0.51 7.65 -51.93 -0.40 0.11 16 37 H 0.06 0.68 8.14 -51.93 -0.42 0.26 16 38 H 0.07 0.71 6.33 -51.93 -0.33 0.38 16 39 H 0.08 0.90 5.10 -51.93 -0.26 0.63 16 40 H 0.06 0.66 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.71 8.14 -51.93 -0.42 0.28 16 42 H 0.06 0.84 8.14 -51.92 -0.42 0.41 16 43 H 0.08 1.37 7.98 -51.93 -0.41 0.96 16 44 H 0.36 7.99 4.00 -40.82 -0.16 7.83 16 45 H 0.26 7.71 8.31 -40.82 -0.34 7.37 16 46 H 0.08 1.38 8.06 -51.93 -0.42 0.96 16 47 H 0.07 1.32 6.92 -51.93 -0.36 0.97 16 48 H 0.13 1.81 5.73 -52.49 -0.30 1.51 16 49 H 0.12 1.31 8.06 -52.49 -0.42 0.88 16 50 H 0.12 0.90 8.06 -52.49 -0.42 0.48 16 51 H 0.12 0.75 8.06 -52.49 -0.42 0.33 16 52 H 0.12 0.83 7.19 -52.49 -0.38 0.46 16 LS Contribution 389.66 15.07 5.87 5.87 Total: -1.00 -32.02 389.66 -10.00 -42.03 By element: Atomic # 1 Polarization: 18.03 SS G_CDS: -8.28 Total: 9.75 kcal Atomic # 6 Polarization: -8.07 SS G_CDS: -3.10 Total: -11.17 kcal Atomic # 7 Polarization: -54.03 SS G_CDS: 0.13 Total: -53.90 kcal Atomic # 8 Polarization: -9.85 SS G_CDS: 0.09 Total: -9.76 kcal Atomic # 14 Polarization: 21.90 SS G_CDS: -4.71 Total: 17.18 kcal Total LS contribution 5.87 Total: 5.87 kcal Total: -32.02 -10.00 -42.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026412783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 70.863 kcal (2) G-P(sol) polarization free energy of solvation -32.025 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.838 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.836 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds