Wall clock time and date at job start Wed Apr 1 2020 03:26:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53006 * 1 3 3 C 1.53004 * 109.46726 * 2 1 4 4 C 1.50690 * 109.47117 * 119.99839 * 2 1 3 5 5 O 1.21291 * 120.00328 * 240.41581 * 4 2 1 6 6 N 1.34785 * 120.00149 * 60.41954 * 4 2 1 7 7 C 1.49218 * 126.05432 * 355.36208 * 6 4 2 8 8 C 1.50348 * 104.85539 * 172.93284 * 7 6 4 9 9 H 1.09005 * 110.04613 * 278.95070 * 8 7 6 10 10 C 1.50993 * 125.56847 * 144.33491 * 8 7 6 11 11 C 1.56400 * 101.59191 * 203.97243 * 10 8 7 12 12 C 1.54938 * 105.62333 * 24.46796 * 11 10 8 13 13 H 1.08997 * 109.34209 * 126.78383 * 12 11 10 14 14 N 1.46497 * 111.17502 * 249.12417 * 12 11 10 15 15 C 1.36932 * 119.99810 * 270.73338 * 14 12 11 16 16 H 1.08002 * 120.00413 * 359.97438 * 15 14 12 17 17 C 1.38813 * 119.99780 * 179.97438 * 15 14 12 18 18 N 1.31619 * 120.00007 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 120.00086 * 0.02562 * 17 15 14 20 20 H 1.48497 * 109.47135 * 89.99858 * 19 17 15 21 21 H 1.48506 * 109.46940 * 210.00069 * 19 17 15 22 22 H 1.48502 * 109.47116 * 329.99600 * 19 17 15 23 23 C 1.50305 * 104.63881 * 8.41570 * 12 11 10 24 24 H 1.09000 * 110.00147 * 79.41579 * 23 12 11 25 25 C 1.49697 * 126.05925 * 175.35978 * 6 4 2 26 26 C 1.50697 * 109.47120 * 240.00168 * 2 1 3 27 27 C 1.38235 * 120.00052 * 232.85334 * 26 2 1 28 28 C 1.38230 * 120.00309 * 179.78998 * 27 26 2 29 29 C 1.38236 * 119.99724 * 0.46296 * 28 27 26 30 30 C 1.38241 * 120.00241 * 359.76696 * 29 28 27 31 31 C 1.38232 * 119.99627 * 0.02701 * 30 29 28 32 32 H 1.08998 * 109.47079 * 292.71416 * 1 2 3 33 33 H 1.09003 * 109.46735 * 52.71550 * 1 2 3 34 34 H 1.08996 * 109.46466 * 172.71080 * 1 2 3 35 35 H 1.08998 * 109.46709 * 174.22729 * 3 2 1 36 36 H 1.09000 * 109.46951 * 294.22850 * 3 2 1 37 37 H 1.09002 * 109.47193 * 54.22992 * 3 2 1 38 38 H 1.09000 * 110.35841 * 291.77604 * 7 6 4 39 39 H 1.08997 * 110.36035 * 54.08742 * 7 6 4 40 40 H 1.09001 * 111.00446 * 322.04972 * 10 8 7 41 41 H 1.08999 * 111.00236 * 85.86351 * 10 8 7 42 42 H 1.09011 * 110.18616 * 144.09864 * 11 10 8 43 43 H 1.08999 * 110.18849 * 265.85980 * 11 10 8 44 44 H 0.97002 * 120.00087 * 90.73204 * 14 12 11 45 45 H 0.97003 * 120.00428 * 180.02562 * 18 17 15 46 46 H 1.08993 * 110.84588 * 36.67040 * 25 6 4 47 47 H 1.09004 * 110.84321 * 273.05744 * 25 6 4 48 48 H 1.08000 * 119.99518 * 359.97438 * 27 26 2 49 49 H 1.07995 * 120.00422 * 180.25039 * 28 27 26 50 50 H 1.07999 * 120.00261 * 179.79052 * 29 28 27 51 51 H 1.07997 * 119.99879 * 179.97438 * 30 29 28 52 52 H 1.07995 * 120.00049 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0324 -0.7103 1.2304 5 8 2.7234 -0.1187 2.0326 6 7 1.7138 -2.0032 1.4395 7 6 0.7993 -2.8294 0.5983 8 6 0.9234 -4.2231 1.1486 9 1 1.8177 -4.7034 0.7513 10 6 -0.1959 -5.2318 1.2459 11 6 0.3139 -6.1567 2.3996 12 6 1.2817 -5.2837 3.2374 13 1 0.9791 -5.3121 4.2841 14 7 2.6665 -5.7381 3.0898 15 6 3.1680 -6.6915 3.9352 16 1 2.5427 -7.1082 4.7110 17 6 4.4801 -7.1224 3.7950 18 7 4.9623 -8.0384 4.6079 19 14 5.5618 -6.4012 2.4537 20 1 6.2719 -5.2074 2.9788 21 1 6.5548 -7.4165 2.0193 22 1 4.7188 -6.0066 1.2966 23 6 1.1207 -3.8968 2.6807 24 1 0.2177 -3.4365 3.0818 25 6 2.2146 -2.8646 2.5567 26 6 2.0324 -0.7104 -1.2305 27 6 2.9443 -1.7421 -1.1090 28 6 3.4018 -2.3966 -2.2373 29 6 2.9547 -2.0130 -3.4879 30 6 2.0463 -0.9781 -3.6097 31 6 1.5856 -0.3265 -2.4811 32 1 -0.3633 0.3968 0.9479 33 1 -0.3633 0.6226 -0.8177 34 1 -0.3632 -1.0194 -0.1304 35 1 3.1250 1.4443 0.1034 36 1 1.7634 1.9257 -0.9371 37 1 1.5947 1.9853 0.8338 38 1 -0.2270 -2.4744 0.6926 39 1 1.1162 -2.8037 -0.4442 40 1 -1.1345 -4.7490 1.5182 41 1 -0.3014 -5.7894 0.3153 42 1 -0.5245 -6.4960 3.0080 43 1 0.8493 -7.0119 1.9873 44 1 3.2283 -5.3636 2.3933 45 1 5.8793 -8.3394 4.5102 46 1 2.3109 -2.2889 3.4771 47 1 3.1620 -3.3333 2.2902 48 1 3.2971 -2.0387 -0.1323 49 1 4.1112 -3.2053 -2.1422 50 1 3.3146 -2.5221 -4.3697 51 1 1.6973 -0.6782 -4.5868 52 1 0.8763 0.4823 -2.5762 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026412783.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:37 Heat of formation + Delta-G solvation = 11.067485 kcal Electronic energy + Delta-G solvation = -31847.410784 eV Core-core repulsion = 28004.925889 eV Total energy + Delta-G solvation = -3842.484895 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.95 seconds Orbital eigenvalues (eV) -42.37105 -40.83453 -39.50304 -36.86965 -36.19560 -35.11621 -33.03351 -31.98631 -30.83461 -30.72520 -30.18520 -28.22171 -27.10926 -25.57615 -24.85100 -23.90495 -23.43758 -22.00878 -21.17047 -20.57353 -19.96474 -19.67222 -18.43068 -17.58942 -17.37889 -16.72079 -16.33718 -16.19753 -16.03657 -15.74007 -15.48377 -15.19363 -15.09034 -14.73544 -14.64508 -14.54896 -14.19542 -14.03409 -13.80660 -13.66522 -13.38268 -13.26668 -13.10919 -13.04908 -12.88150 -12.80927 -12.72902 -12.43697 -12.27010 -12.13285 -12.03188 -11.94381 -11.82888 -11.67291 -11.62389 -11.44244 -11.07341 -10.95987 -10.74018 -9.85447 -9.74902 -9.61091 -9.31704 -8.05314 -5.36327 0.38704 0.46562 1.28035 1.32128 1.37376 1.49888 1.75748 2.42111 2.83194 2.89695 3.26984 3.33187 3.54219 3.55886 3.77652 3.84758 3.96317 4.04466 4.08360 4.12319 4.16468 4.24985 4.29760 4.34891 4.41437 4.53561 4.57772 4.61151 4.62879 4.66884 4.71824 4.80083 4.81542 4.83121 4.85846 4.91028 4.95297 5.02959 5.08622 5.12899 5.14310 5.18940 5.20767 5.29157 5.33185 5.40964 5.56516 5.59762 5.61434 5.62619 5.78806 6.07340 6.20320 6.42637 7.01961 7.05822 7.83453 8.00275 9.16716 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012255 B = 0.003865 C = 0.003622 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2284.194151 B = 7242.428987 C = 7728.990700 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.031 4.031 3 C -0.122 4.122 4 C 0.532 3.468 5 O -0.588 6.588 6 N -0.617 5.617 7 C 0.119 3.881 8 C -0.116 4.116 9 H 0.057 0.943 10 C -0.080 4.080 11 C -0.140 4.140 12 C 0.187 3.813 13 H 0.049 0.951 14 N -0.745 5.745 15 C -0.220 4.220 16 H 0.063 0.937 17 C -0.058 4.058 18 N -0.982 5.982 19 Si 0.939 3.061 20 H -0.289 1.289 21 H -0.293 1.293 22 H -0.256 1.256 23 C -0.119 4.119 24 H 0.106 0.894 25 C 0.127 3.873 26 C -0.077 4.077 27 C -0.137 4.137 28 C -0.132 4.132 29 C -0.121 4.121 30 C -0.113 4.113 31 C -0.103 4.103 32 H 0.061 0.939 33 H 0.099 0.901 34 H 0.078 0.922 35 H 0.037 0.963 36 H 0.094 0.906 37 H 0.062 0.938 38 H 0.103 0.897 39 H 0.088 0.912 40 H 0.096 0.904 41 H 0.078 0.922 42 H 0.075 0.925 43 H 0.049 0.951 44 H 0.361 0.639 45 H 0.256 0.744 46 H 0.064 0.936 47 H 0.046 0.954 48 H 0.093 0.907 49 H 0.115 0.885 50 H 0.140 0.860 51 H 0.154 0.846 52 H 0.154 0.846 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.817 18.122 -20.726 31.751 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.034 4.034 3 C -0.179 4.179 4 C 0.323 3.677 5 O -0.468 6.468 6 N -0.350 5.350 7 C -0.002 4.002 8 C -0.135 4.135 9 H 0.075 0.925 10 C -0.118 4.118 11 C -0.180 4.180 12 C 0.079 3.921 13 H 0.068 0.932 14 N -0.388 5.388 15 C -0.351 4.351 16 H 0.081 0.919 17 C -0.250 4.250 18 N -0.634 5.634 19 Si 0.768 3.232 20 H -0.215 1.215 21 H -0.220 1.220 22 H -0.181 1.181 23 C -0.139 4.139 24 H 0.124 0.876 25 C 0.005 3.995 26 C -0.077 4.077 27 C -0.156 4.156 28 C -0.150 4.150 29 C -0.139 4.139 30 C -0.131 4.131 31 C -0.120 4.120 32 H 0.080 0.920 33 H 0.118 0.882 34 H 0.097 0.903 35 H 0.057 0.943 36 H 0.113 0.887 37 H 0.081 0.919 38 H 0.121 0.879 39 H 0.106 0.894 40 H 0.114 0.886 41 H 0.097 0.903 42 H 0.093 0.907 43 H 0.068 0.932 44 H 0.195 0.805 45 H 0.065 0.935 46 H 0.082 0.918 47 H 0.065 0.935 48 H 0.111 0.889 49 H 0.133 0.867 50 H 0.158 0.842 51 H 0.171 0.829 52 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -15.435 18.378 -20.143 31.333 hybrid contribution 2.000 -0.465 0.312 2.077 sum -13.436 17.913 -19.832 29.911 Atomic orbital electron populations 1.22111 0.89275 1.04644 1.04041 1.19766 0.99237 0.95881 0.88468 1.21702 1.00574 0.92155 1.03478 1.20848 0.79072 0.80199 0.87619 1.90683 1.41015 1.66312 1.48793 1.49890 1.46972 1.09937 1.28213 1.21744 0.94634 0.88870 0.94921 1.22217 1.01094 0.95109 0.95102 0.92480 1.21670 0.96701 0.95010 0.98423 1.23474 0.98543 0.98599 0.97398 1.20178 0.83805 0.90556 0.97597 0.93247 1.42786 1.10580 1.47606 1.37846 1.19080 0.95297 1.12396 1.08334 0.91875 1.25310 0.98554 0.99861 1.01228 1.69847 1.16066 1.35370 1.42072 0.85651 0.79376 0.77475 0.80731 1.21546 1.21997 1.18069 1.22343 0.99024 0.94597 0.97961 0.87568 1.21238 0.96680 0.91525 0.90051 1.19492 0.97708 0.96116 0.94409 1.21187 0.98439 0.97468 0.98469 1.21248 1.00437 1.00143 0.93176 1.21443 0.97635 0.97795 0.97055 1.21496 0.96596 0.95332 0.99687 1.21195 1.00089 1.00342 0.90391 0.92024 0.88198 0.90328 0.94336 0.88684 0.91920 0.87883 0.89446 0.88593 0.90350 0.90654 0.93237 0.80516 0.93461 0.91754 0.93523 0.88901 0.86668 0.84235 0.82870 0.82878 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.84 7.75 71.98 0.56 -1.28 16 2 C -0.03 -0.60 0.59 -53.67 -0.03 -0.64 16 3 C -0.12 -2.32 7.77 71.98 0.56 -1.76 16 4 C 0.53 15.53 5.27 87.65 0.46 15.99 16 5 O -0.59 -22.52 16.22 -3.06 -0.05 -22.57 16 6 N -0.62 -16.83 2.30 -815.06 -1.87 -18.70 16 7 C 0.12 2.42 4.64 85.00 0.39 2.82 16 8 C -0.12 -2.81 2.72 -10.57 -0.03 -2.84 16 9 H 0.06 1.71 7.60 -2.38 -0.02 1.69 16 10 C -0.08 -1.65 6.72 31.13 0.21 -1.44 16 11 C -0.14 -4.11 6.74 32.44 0.22 -3.89 16 12 C 0.19 6.66 3.34 44.78 0.15 6.81 16 13 H 0.05 1.87 8.09 -2.39 -0.02 1.85 16 14 N -0.74 -34.08 4.62 -323.94 -1.50 -35.57 16 15 C -0.22 -12.43 10.44 84.03 0.88 -11.55 16 16 H 0.06 3.87 8.06 -2.91 -0.02 3.85 16 17 C -0.06 -3.46 5.50 84.86 0.47 -2.99 16 18 N -0.98 -63.64 13.97 21.65 0.30 -63.33 16 19 Si 0.94 47.07 27.74 68.60 1.90 48.98 16 20 H -0.29 -14.61 7.11 99.48 0.71 -13.90 16 21 H -0.29 -14.78 7.11 99.48 0.71 -14.07 16 22 H -0.26 -11.66 6.52 99.48 0.65 -11.01 16 23 C -0.12 -3.43 2.65 -10.61 -0.03 -3.46 16 24 H 0.11 2.59 8.14 -2.39 -0.02 2.57 16 25 C 0.13 4.20 6.54 85.08 0.56 4.75 16 26 C -0.08 -1.46 3.67 -19.87 -0.07 -1.53 16 27 C -0.14 -3.31 6.70 22.27 0.15 -3.16 16 28 C -0.13 -2.82 10.05 22.27 0.22 -2.60 16 29 C -0.12 -1.91 10.05 22.27 0.22 -1.69 16 30 C -0.11 -1.39 10.05 22.27 0.22 -1.16 16 31 C -0.10 -1.33 8.74 22.27 0.19 -1.14 16 32 H 0.06 0.86 8.13 -2.39 -0.02 0.84 16 33 H 0.10 0.71 7.32 -2.39 -0.02 0.69 16 34 H 0.08 0.91 4.87 -2.39 -0.01 0.89 16 35 H 0.04 0.93 7.93 -2.39 -0.02 0.91 16 36 H 0.09 1.17 7.65 -2.39 -0.02 1.15 16 37 H 0.06 1.22 8.14 -2.39 -0.02 1.20 16 38 H 0.10 1.54 6.33 -2.39 -0.02 1.52 16 39 H 0.09 1.74 5.10 -2.39 -0.01 1.73 16 40 H 0.10 1.46 8.14 -2.39 -0.02 1.44 16 41 H 0.08 1.45 8.14 -2.39 -0.02 1.43 16 42 H 0.07 1.97 8.14 -2.38 -0.02 1.95 16 43 H 0.05 1.74 7.98 -2.39 -0.02 1.72 16 44 H 0.36 16.43 4.00 -92.71 -0.37 16.06 16 45 H 0.26 15.93 8.31 -92.71 -0.77 15.16 16 46 H 0.06 2.31 8.06 -2.39 -0.02 2.29 16 47 H 0.05 1.77 6.92 -2.39 -0.02 1.76 16 48 H 0.09 2.82 5.73 -2.91 -0.02 2.80 16 49 H 0.12 2.50 8.06 -2.91 -0.02 2.48 16 50 H 0.14 1.61 8.06 -2.91 -0.02 1.59 16 51 H 0.15 0.95 8.06 -2.91 -0.02 0.93 16 52 H 0.15 1.06 7.19 -2.91 -0.02 1.04 16 Total: -1.00 -76.02 389.66 4.58 -71.44 By element: Atomic # 1 Polarization: 30.04 SS G_CDS: 0.49 Total: 30.52 kcal Atomic # 6 Polarization: -16.07 SS G_CDS: 5.31 Total: -10.76 kcal Atomic # 7 Polarization: -114.55 SS G_CDS: -3.07 Total: -117.61 kcal Atomic # 8 Polarization: -22.52 SS G_CDS: -0.05 Total: -22.57 kcal Atomic # 14 Polarization: 47.07 SS G_CDS: 1.90 Total: 48.98 kcal Total: -76.02 4.58 -71.44 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026412783.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 82.509 kcal (2) G-P(sol) polarization free energy of solvation -76.022 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 6.487 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.580 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.442 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.067 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.95 seconds