Wall clock time and date at job start Wed Apr 1 2020 03:26:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 C 1.50698 * 109.47202 * 119.99812 * 2 1 3 5 5 O 1.21284 * 119.99876 * 241.67943 * 4 2 1 6 6 N 1.34775 * 119.99873 * 61.68400 * 4 2 1 7 7 C 1.46900 * 125.62114 * 355.27508 * 6 4 2 8 8 C 1.54201 * 107.63843 * 178.51805 * 7 6 4 9 9 H 1.09004 * 113.73055 * 215.28374 * 8 7 6 10 10 C 1.54973 * 108.03465 * 87.01250 * 8 7 6 11 11 C 1.54140 * 104.56925 * 214.53942 * 10 8 7 12 12 C 1.53869 * 106.53579 * 24.51314 * 11 10 8 13 13 H 1.08999 * 109.91941 * 238.73054 * 12 11 10 14 14 N 1.46501 * 109.92158 * 117.62716 * 12 11 10 15 15 C 1.36935 * 120.00575 * 86.44774 * 14 12 11 16 16 H 1.08003 * 119.99421 * 0.02562 * 15 14 12 17 17 C 1.38809 * 119.99850 * 179.97438 * 15 14 12 18 18 N 1.31623 * 119.99514 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00191 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47397 * 89.99998 * 19 17 15 21 21 H 1.48510 * 109.46912 * 209.99679 * 19 17 15 22 22 H 1.48497 * 109.47045 * 329.99232 * 19 17 15 23 23 C 1.53703 * 107.03109 * 358.27546 * 12 11 10 24 24 H 1.09005 * 112.96866 * 214.07713 * 23 12 11 25 25 C 1.47340 * 125.61482 * 175.31923 * 6 4 2 26 26 C 1.50702 * 109.47139 * 239.99872 * 2 1 3 27 27 C 1.38230 * 120.00152 * 232.56229 * 26 2 1 28 28 C 1.38238 * 120.00018 * 179.78798 * 27 26 2 29 29 C 1.38233 * 119.99811 * 0.44177 * 28 27 26 30 30 C 1.38236 * 120.00301 * 359.81384 * 29 28 27 31 31 C 1.38236 * 119.99679 * 359.97438 * 30 29 28 32 32 H 1.09003 * 109.47039 * 286.20327 * 1 2 3 33 33 H 1.09002 * 109.47256 * 46.20275 * 1 2 3 34 34 H 1.08998 * 109.47221 * 166.20582 * 1 2 3 35 35 H 1.09002 * 109.47240 * 184.88476 * 3 2 1 36 36 H 1.09003 * 109.46834 * 304.87933 * 3 2 1 37 37 H 1.08994 * 109.46996 * 64.87423 * 3 2 1 38 38 H 1.09003 * 109.82407 * 298.04826 * 7 6 4 39 39 H 1.09002 * 109.82384 * 58.90503 * 7 6 4 40 40 H 1.08996 * 110.44868 * 95.77050 * 10 8 7 41 41 H 1.09001 * 110.42398 * 333.29999 * 10 8 7 42 42 H 1.09003 * 110.04989 * 265.22702 * 11 10 8 43 43 H 1.09003 * 110.05087 * 143.79930 * 11 10 8 44 44 H 0.97008 * 119.99029 * 266.45252 * 14 12 11 45 45 H 0.97006 * 119.99528 * 180.02562 * 18 17 15 46 46 H 1.09004 * 110.30251 * 84.94570 * 25 6 4 47 47 H 1.08999 * 110.38415 * 322.84521 * 25 6 4 48 48 H 1.08003 * 119.99858 * 0.02562 * 27 26 2 49 49 H 1.07995 * 119.99664 * 180.27489 * 28 27 26 50 50 H 1.07995 * 119.99933 * 179.83520 * 29 28 27 51 51 H 1.07994 * 120.00210 * 180.02562 * 30 29 28 52 52 H 1.07998 * 119.99737 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7043 -0.1124 2.0440 6 7 1.7350 -2.0102 1.4268 7 6 0.8549 -2.8242 0.5778 8 6 0.8367 -4.2528 1.1579 9 1 0.7724 -5.0333 0.3998 10 6 -0.2698 -4.3166 2.2411 11 6 0.2860 -5.2818 3.3067 12 6 1.8185 -5.2459 3.1734 13 1 2.1963 -6.2460 2.9610 14 7 2.4156 -4.7397 4.4118 15 6 2.6902 -5.5999 5.4412 16 1 2.4670 -6.6518 5.3399 17 6 3.2564 -5.1202 6.6142 18 7 3.5208 -5.9472 7.6035 19 14 3.6430 -3.3010 6.7889 20 1 2.4672 -2.5978 7.3618 21 1 4.8108 -3.1275 7.6898 22 1 3.9586 -2.7317 5.4542 23 6 2.1470 -4.2989 2.0082 24 1 3.0284 -4.6066 1.4455 25 6 2.2384 -2.8485 2.5288 26 6 2.0323 -0.7104 -1.2305 27 6 2.9488 -1.7381 -1.1095 28 6 3.4063 -2.3927 -2.2378 29 6 2.9541 -2.0135 -3.4879 30 6 2.0416 -0.9822 -3.6093 31 6 1.5809 -0.3306 -2.4806 32 1 -0.3633 0.2868 0.9869 33 1 -0.3634 0.7113 -0.7418 34 1 -0.3633 -0.9980 -0.2450 35 1 3.1265 1.4439 -0.0875 36 1 1.6070 1.9810 -0.8431 37 1 1.7497 1.9305 0.9304 38 1 -0.1530 -2.4093 0.5852 39 1 1.2392 -2.8430 -0.4421 40 1 -1.1945 -4.7092 1.8183 41 1 -0.4370 -3.3297 2.6726 42 1 -0.0815 -6.2916 3.1243 43 1 -0.0105 -4.9506 4.3020 44 1 2.6163 -3.7949 4.5025 45 1 3.9161 -5.6119 8.4234 46 1 1.6143 -2.7246 3.4139 47 1 3.2731 -2.5935 2.7578 48 1 3.3046 -2.0322 -0.1330 49 1 4.1189 -3.1986 -2.1429 50 1 3.3135 -2.5231 -4.3696 51 1 1.6881 -0.6862 -4.5859 52 1 0.8676 0.4748 -2.5755 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026412784.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:48 Heat of formation + Delta-G solvation = 18.298882 kcal Electronic energy + Delta-G solvation = -31853.179152 eV Core-core repulsion = 28011.007834 eV Total energy + Delta-G solvation = -3842.171318 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 5.75 seconds Orbital eigenvalues (eV) -41.36804 -39.61293 -38.46797 -35.44074 -35.19976 -33.33755 -31.25155 -31.20102 -30.04445 -29.43167 -28.77309 -27.43850 -25.89118 -24.63372 -23.17564 -22.80283 -22.70990 -21.09304 -19.81378 -19.01487 -18.93975 -17.89666 -17.66701 -16.50380 -15.96098 -15.76947 -15.41897 -15.10663 -14.70035 -14.50548 -14.23519 -14.16242 -13.87318 -13.62416 -13.32575 -13.27195 -12.98531 -12.72823 -12.55363 -12.51627 -12.38996 -12.29362 -12.21846 -12.06186 -11.96693 -11.52142 -11.36757 -11.31407 -10.96638 -10.83611 -10.70171 -10.58977 -10.40000 -10.38009 -10.32620 -9.91921 -9.65311 -9.55305 -9.12397 -8.93665 -8.91592 -8.51002 -7.27104 -5.77199 -3.13049 1.08195 1.16083 2.59321 2.96499 3.40430 3.45260 3.49508 3.52240 4.19222 4.30084 4.42647 4.59600 4.60312 4.68362 4.75775 4.82294 4.84664 4.89297 4.94396 5.20514 5.26613 5.30129 5.34552 5.38670 5.39001 5.40688 5.51153 5.53691 5.55102 5.59535 5.61468 5.71263 5.77635 5.79810 5.81242 5.84873 5.89922 5.94320 6.04521 6.09203 6.21060 6.23185 6.28149 6.29801 6.32826 6.39633 6.43398 6.53031 6.72320 6.73846 6.98361 7.54917 7.99257 8.15931 8.42039 9.20041 9.93012 10.11368 11.40982 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015068 B = 0.003551 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.802307 B = 7882.451072 C = 8496.454497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.038 4.038 3 C -0.123 4.123 4 C 0.536 3.464 5 O -0.535 6.535 6 N -0.610 5.610 7 C 0.093 3.907 8 C -0.100 4.100 9 H 0.104 0.896 10 C -0.116 4.116 11 C -0.145 4.145 12 C 0.189 3.811 13 H 0.062 0.938 14 N -0.749 5.749 15 C -0.245 4.245 16 H 0.091 0.909 17 C 0.007 3.993 18 N -0.933 5.933 19 Si 0.876 3.124 20 H -0.284 1.284 21 H -0.290 1.290 22 H -0.275 1.275 23 C -0.106 4.106 24 H 0.091 0.909 25 C 0.110 3.890 26 C -0.072 4.072 27 C -0.113 4.113 28 C -0.116 4.116 29 C -0.121 4.121 30 C -0.121 4.121 31 C -0.109 4.109 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.072 0.928 35 H 0.062 0.938 36 H 0.062 0.938 37 H 0.068 0.932 38 H 0.071 0.929 39 H 0.075 0.925 40 H 0.060 0.940 41 H 0.062 0.938 42 H 0.056 0.944 43 H 0.074 0.926 44 H 0.363 0.637 45 H 0.259 0.741 46 H 0.077 0.923 47 H 0.076 0.924 48 H 0.128 0.872 49 H 0.123 0.877 50 H 0.120 0.880 51 H 0.121 0.879 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.899 10.048 -25.551 28.569 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.041 4.041 3 C -0.181 4.181 4 C 0.324 3.676 5 O -0.411 6.411 6 N -0.344 5.344 7 C -0.030 4.030 8 C -0.119 4.119 9 H 0.122 0.878 10 C -0.154 4.154 11 C -0.185 4.185 12 C 0.078 3.922 13 H 0.080 0.920 14 N -0.393 5.393 15 C -0.374 4.374 16 H 0.109 0.891 17 C -0.188 4.188 18 N -0.581 5.581 19 Si 0.707 3.293 20 H -0.210 1.210 21 H -0.216 1.216 22 H -0.202 1.202 23 C -0.126 4.126 24 H 0.109 0.891 25 C -0.012 4.012 26 C -0.073 4.073 27 C -0.131 4.131 28 C -0.134 4.134 29 C -0.139 4.139 30 C -0.139 4.139 31 C -0.127 4.127 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.090 0.910 35 H 0.081 0.919 36 H 0.081 0.919 37 H 0.087 0.913 38 H 0.089 0.911 39 H 0.093 0.907 40 H 0.079 0.921 41 H 0.081 0.919 42 H 0.075 0.925 43 H 0.093 0.907 44 H 0.198 0.802 45 H 0.069 0.931 46 H 0.095 0.905 47 H 0.095 0.905 48 H 0.146 0.854 49 H 0.141 0.859 50 H 0.139 0.861 51 H 0.139 0.861 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -7.469 10.261 -24.924 27.970 hybrid contribution 0.325 1.189 0.341 1.279 sum -7.144 11.451 -24.584 28.045 Atomic orbital electron populations 1.22066 0.91848 1.03395 1.03005 1.19748 0.97348 0.96482 0.90489 1.21685 1.01880 0.92096 1.02416 1.20009 0.80051 0.80408 0.87106 1.90733 1.39318 1.64923 1.46110 1.48522 1.47859 1.09472 1.28569 1.22467 0.94169 0.91313 0.95030 1.23173 0.96151 0.95114 0.97450 0.87810 1.22449 0.96866 1.00299 0.95765 1.22928 0.98295 0.98186 0.99113 1.20639 0.91165 0.95594 0.84757 0.91962 1.43065 1.75257 1.07215 1.13810 1.19074 1.34214 0.92224 0.91936 0.89111 1.24644 1.00944 0.96924 0.96333 1.69700 1.49161 1.33435 1.05770 0.86685 0.78139 0.86837 0.77687 1.21025 1.21589 1.20153 1.23235 0.97428 0.94581 0.97395 0.89103 1.22226 1.00402 0.88925 0.89604 1.19525 0.97624 0.96490 0.93631 1.21370 0.96533 0.95574 0.99607 1.21163 0.99941 0.99952 0.92349 1.21172 0.97730 0.97519 0.97451 1.21101 0.97889 0.96562 0.98330 1.20897 1.00206 1.00008 0.91547 0.91686 0.91200 0.90968 0.91880 0.91863 0.91283 0.91074 0.90666 0.92144 0.91880 0.92538 0.90698 0.80244 0.93051 0.90504 0.90535 0.85437 0.85901 0.86148 0.86069 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.27 7.56 37.16 0.28 -0.99 16 2 C -0.04 -0.41 0.59 -156.81 -0.09 -0.50 16 3 C -0.12 -1.30 7.64 37.16 0.28 -1.02 16 4 C 0.54 7.97 5.24 -10.99 -0.06 7.91 16 5 O -0.53 -10.20 16.20 5.55 0.09 -10.11 16 6 N -0.61 -8.47 2.19 -171.10 -0.37 -8.84 16 7 C 0.09 1.01 4.25 -3.20 -0.01 0.99 16 8 C -0.10 -1.14 4.25 -87.20 -0.37 -1.51 16 9 H 0.10 0.99 8.14 -51.93 -0.42 0.57 16 10 C -0.12 -1.46 5.59 -25.09 -0.14 -1.60 16 11 C -0.14 -2.32 6.56 -25.68 -0.17 -2.49 16 12 C 0.19 3.39 3.24 -67.11 -0.22 3.17 16 13 H 0.06 1.16 8.09 -51.93 -0.42 0.74 16 14 N -0.75 -17.26 4.60 -52.63 -0.24 -17.50 16 15 C -0.24 -6.80 10.44 -15.06 -0.16 -6.95 16 16 H 0.09 2.68 8.06 -52.48 -0.42 2.26 16 17 C 0.01 0.22 5.50 -17.43 -0.10 0.12 16 18 N -0.93 -29.40 13.97 55.49 0.78 -28.62 16 19 Si 0.88 22.79 27.74 -169.99 -4.71 18.08 16 20 H -0.28 -7.36 7.11 56.52 0.40 -6.96 16 21 H -0.29 -7.63 7.11 56.52 0.40 -7.22 16 22 H -0.28 -6.91 6.52 56.52 0.37 -6.54 16 23 C -0.11 -1.56 4.03 -87.79 -0.35 -1.91 16 24 H 0.09 1.27 8.14 -51.93 -0.42 0.84 16 25 C 0.11 1.83 4.38 -2.87 -0.01 1.81 16 26 C -0.07 -0.73 3.67 -104.62 -0.38 -1.12 16 27 C -0.11 -1.24 6.50 -39.58 -0.26 -1.50 16 28 C -0.12 -1.09 10.05 -39.58 -0.40 -1.49 16 29 C -0.12 -0.98 10.05 -39.58 -0.40 -1.37 16 30 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 31 C -0.11 -0.90 8.93 -39.58 -0.35 -1.25 16 32 H 0.06 0.61 8.06 -51.93 -0.42 0.19 16 33 H 0.07 0.46 7.47 -51.93 -0.39 0.07 16 34 H 0.07 0.59 5.15 -51.93 -0.27 0.32 16 35 H 0.06 0.74 8.14 -51.93 -0.42 0.32 16 36 H 0.06 0.50 7.97 -51.93 -0.41 0.09 16 37 H 0.07 0.79 7.93 -51.93 -0.41 0.37 16 38 H 0.07 0.70 5.60 -51.93 -0.29 0.41 16 39 H 0.08 0.76 4.92 -51.93 -0.26 0.50 16 40 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 41 H 0.06 0.85 7.28 -51.93 -0.38 0.47 16 42 H 0.06 0.84 8.14 -51.93 -0.42 0.42 16 43 H 0.07 1.40 7.91 -51.93 -0.41 0.99 16 44 H 0.36 8.43 3.19 -40.82 -0.13 8.30 16 45 H 0.26 7.83 8.31 -40.82 -0.34 7.49 16 46 H 0.08 1.43 6.30 -51.93 -0.33 1.10 16 47 H 0.08 1.44 8.07 -51.93 -0.42 1.02 16 48 H 0.13 1.65 5.69 -52.48 -0.30 1.35 16 49 H 0.12 1.01 8.06 -52.49 -0.42 0.59 16 50 H 0.12 0.73 8.06 -52.49 -0.42 0.31 16 51 H 0.12 0.66 8.06 -52.49 -0.42 0.24 16 52 H 0.12 0.79 7.44 -52.49 -0.39 0.40 16 LS Contribution 386.24 15.07 5.82 5.82 Total: -1.00 -33.18 386.24 -10.14 -43.32 By element: Atomic # 1 Polarization: 17.05 SS G_CDS: -8.19 Total: 8.86 kcal Atomic # 6 Polarization: -7.70 SS G_CDS: -3.30 Total: -11.00 kcal Atomic # 7 Polarization: -55.12 SS G_CDS: 0.16 Total: -54.96 kcal Atomic # 8 Polarization: -10.20 SS G_CDS: 0.09 Total: -10.11 kcal Atomic # 14 Polarization: 22.79 SS G_CDS: -4.71 Total: 18.08 kcal Total LS contribution 5.82 Total: 5.82 kcal Total: -33.18 -10.14 -43.32 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026412784.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 61.622 kcal (2) G-P(sol) polarization free energy of solvation -33.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 28.440 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.142 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.324 kcal (6) G-S(sol) free energy of system = (1) + (5) 18.299 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 5.75 seconds