Wall clock time and date at job start Wed Apr 1 2020 03:26:45 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 109.47025 * 2 1 4 4 C 1.50698 * 109.47202 * 119.99812 * 2 1 3 5 5 O 1.21284 * 119.99876 * 241.67943 * 4 2 1 6 6 N 1.34775 * 119.99873 * 61.68400 * 4 2 1 7 7 C 1.46900 * 125.62114 * 355.27508 * 6 4 2 8 8 C 1.54201 * 107.63843 * 178.51805 * 7 6 4 9 9 H 1.09004 * 113.73055 * 215.28374 * 8 7 6 10 10 C 1.54973 * 108.03465 * 87.01250 * 8 7 6 11 11 C 1.54140 * 104.56925 * 214.53942 * 10 8 7 12 12 C 1.53869 * 106.53579 * 24.51314 * 11 10 8 13 13 H 1.08999 * 109.91941 * 238.73054 * 12 11 10 14 14 N 1.46501 * 109.92158 * 117.62716 * 12 11 10 15 15 C 1.36935 * 120.00575 * 86.44774 * 14 12 11 16 16 H 1.08003 * 119.99421 * 0.02562 * 15 14 12 17 17 C 1.38809 * 119.99850 * 179.97438 * 15 14 12 18 18 N 1.31623 * 119.99514 * 180.02562 * 17 15 14 19 19 Si 1.86798 * 120.00191 * 0.02562 * 17 15 14 20 20 H 1.48500 * 109.47397 * 89.99998 * 19 17 15 21 21 H 1.48510 * 109.46912 * 209.99679 * 19 17 15 22 22 H 1.48497 * 109.47045 * 329.99232 * 19 17 15 23 23 C 1.53703 * 107.03109 * 358.27546 * 12 11 10 24 24 H 1.09005 * 112.96866 * 214.07713 * 23 12 11 25 25 C 1.47340 * 125.61482 * 175.31923 * 6 4 2 26 26 C 1.50702 * 109.47139 * 239.99872 * 2 1 3 27 27 C 1.38230 * 120.00152 * 232.56229 * 26 2 1 28 28 C 1.38238 * 120.00018 * 179.78798 * 27 26 2 29 29 C 1.38233 * 119.99811 * 0.44177 * 28 27 26 30 30 C 1.38236 * 120.00301 * 359.81384 * 29 28 27 31 31 C 1.38236 * 119.99679 * 359.97438 * 30 29 28 32 32 H 1.09003 * 109.47039 * 286.20327 * 1 2 3 33 33 H 1.09002 * 109.47256 * 46.20275 * 1 2 3 34 34 H 1.08998 * 109.47221 * 166.20582 * 1 2 3 35 35 H 1.09002 * 109.47240 * 184.88476 * 3 2 1 36 36 H 1.09003 * 109.46834 * 304.87933 * 3 2 1 37 37 H 1.08994 * 109.46996 * 64.87423 * 3 2 1 38 38 H 1.09003 * 109.82407 * 298.04826 * 7 6 4 39 39 H 1.09002 * 109.82384 * 58.90503 * 7 6 4 40 40 H 1.08996 * 110.44868 * 95.77050 * 10 8 7 41 41 H 1.09001 * 110.42398 * 333.29999 * 10 8 7 42 42 H 1.09003 * 110.04989 * 265.22702 * 11 10 8 43 43 H 1.09003 * 110.05087 * 143.79930 * 11 10 8 44 44 H 0.97008 * 119.99029 * 266.45252 * 14 12 11 45 45 H 0.97006 * 119.99528 * 180.02562 * 18 17 15 46 46 H 1.09004 * 110.30251 * 84.94570 * 25 6 4 47 47 H 1.08999 * 110.38415 * 322.84521 * 25 6 4 48 48 H 1.08003 * 119.99858 * 0.02562 * 27 26 2 49 49 H 1.07995 * 119.99664 * 180.27489 * 28 27 26 50 50 H 1.07995 * 119.99933 * 179.83520 * 29 28 27 51 51 H 1.07994 * 120.00210 * 180.02562 * 30 29 28 52 52 H 1.07998 * 119.99737 * 180.02562 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4426 0.0000 4 6 2.0323 -0.7104 1.2305 5 8 2.7043 -0.1124 2.0440 6 7 1.7350 -2.0102 1.4268 7 6 0.8549 -2.8242 0.5778 8 6 0.8367 -4.2528 1.1579 9 1 0.7724 -5.0333 0.3998 10 6 -0.2698 -4.3166 2.2411 11 6 0.2860 -5.2818 3.3067 12 6 1.8185 -5.2459 3.1734 13 1 2.1963 -6.2460 2.9610 14 7 2.4156 -4.7397 4.4118 15 6 2.6902 -5.5999 5.4412 16 1 2.4670 -6.6518 5.3399 17 6 3.2564 -5.1202 6.6142 18 7 3.5208 -5.9472 7.6035 19 14 3.6430 -3.3010 6.7889 20 1 2.4672 -2.5978 7.3618 21 1 4.8108 -3.1275 7.6898 22 1 3.9586 -2.7317 5.4542 23 6 2.1470 -4.2989 2.0082 24 1 3.0284 -4.6066 1.4455 25 6 2.2384 -2.8485 2.5288 26 6 2.0323 -0.7104 -1.2305 27 6 2.9488 -1.7381 -1.1095 28 6 3.4063 -2.3927 -2.2378 29 6 2.9541 -2.0135 -3.4879 30 6 2.0416 -0.9822 -3.6093 31 6 1.5809 -0.3306 -2.4806 32 1 -0.3633 0.2868 0.9869 33 1 -0.3634 0.7113 -0.7418 34 1 -0.3633 -0.9980 -0.2450 35 1 3.1265 1.4439 -0.0875 36 1 1.6070 1.9810 -0.8431 37 1 1.7497 1.9305 0.9304 38 1 -0.1530 -2.4093 0.5852 39 1 1.2392 -2.8430 -0.4421 40 1 -1.1945 -4.7092 1.8183 41 1 -0.4370 -3.3297 2.6726 42 1 -0.0815 -6.2916 3.1243 43 1 -0.0105 -4.9506 4.3020 44 1 2.6163 -3.7949 4.5025 45 1 3.9161 -5.6119 8.4234 46 1 1.6143 -2.7246 3.4139 47 1 3.2731 -2.5935 2.7578 48 1 3.3046 -2.0322 -0.1330 49 1 4.1189 -3.1986 -2.1429 50 1 3.3135 -2.5231 -4.3696 51 1 1.6881 -0.6862 -4.5859 52 1 0.8676 0.4748 -2.5755 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026412784.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:45 Heat of formation + Delta-G solvation = -0.636769 kcal Electronic energy + Delta-G solvation = -31854.000264 eV Core-core repulsion = 28011.007834 eV Total energy + Delta-G solvation = -3842.992430 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 2.89 seconds Orbital eigenvalues (eV) -42.39251 -40.64038 -39.46860 -36.85004 -36.19120 -34.98461 -33.14943 -31.88091 -30.76025 -30.65416 -30.10971 -28.26497 -27.20181 -25.73700 -24.83446 -23.90643 -23.40362 -21.98358 -20.97972 -20.46238 -20.19281 -19.45125 -18.74898 -17.46614 -17.24167 -16.76288 -16.72834 -16.18914 -16.03380 -15.83126 -15.27914 -15.01598 -14.92286 -14.68034 -14.49741 -14.29057 -14.18255 -14.10556 -13.89775 -13.75744 -13.61718 -13.26055 -13.23749 -13.10851 -12.90512 -12.86270 -12.67278 -12.39703 -12.22628 -12.16700 -12.01778 -11.81976 -11.71168 -11.64284 -11.56353 -11.49766 -11.33931 -11.01928 -10.80347 -9.82915 -9.68413 -9.53175 -9.32259 -8.08097 -5.38451 0.43265 0.52369 1.27381 1.30682 1.34558 1.47183 1.86893 2.39109 2.88093 3.16453 3.25128 3.34635 3.46321 3.54568 3.68485 3.89599 3.97027 4.07536 4.13048 4.13613 4.20846 4.23864 4.33817 4.34879 4.36509 4.56070 4.57933 4.59110 4.64085 4.66478 4.69145 4.71479 4.80105 4.81880 4.87661 4.89847 5.02850 5.05616 5.09390 5.15659 5.18646 5.20684 5.22679 5.27040 5.29632 5.50018 5.55242 5.61852 5.66546 5.67762 5.77007 6.12329 6.18051 6.45522 7.01425 7.03902 7.82031 7.97289 9.13843 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.015068 B = 0.003551 C = 0.003295 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1857.802307 B = 7882.451072 C = 8496.454497 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C -0.030 4.030 3 C -0.122 4.122 4 C 0.528 3.472 5 O -0.591 6.591 6 N -0.605 5.605 7 C 0.094 3.906 8 C -0.081 4.081 9 H 0.140 0.860 10 C -0.107 4.107 11 C -0.140 4.140 12 C 0.176 3.824 13 H 0.057 0.943 14 N -0.755 5.755 15 C -0.219 4.219 16 H 0.067 0.933 17 C -0.055 4.055 18 N -0.980 5.980 19 Si 0.934 3.066 20 H -0.282 1.282 21 H -0.292 1.292 22 H -0.269 1.269 23 C -0.099 4.099 24 H 0.099 0.901 25 C 0.113 3.887 26 C -0.080 4.080 27 C -0.134 4.134 28 C -0.125 4.125 29 C -0.120 4.120 30 C -0.116 4.116 31 C -0.104 4.104 32 H 0.052 0.948 33 H 0.100 0.900 34 H 0.082 0.918 35 H 0.041 0.959 36 H 0.097 0.903 37 H 0.053 0.947 38 H 0.093 0.907 39 H 0.093 0.907 40 H 0.095 0.905 41 H 0.051 0.949 42 H 0.070 0.930 43 H 0.041 0.959 44 H 0.361 0.639 45 H 0.257 0.743 46 H 0.052 0.948 47 H 0.042 0.958 48 H 0.098 0.902 49 H 0.126 0.874 50 H 0.142 0.858 51 H 0.150 0.850 52 H 0.147 0.853 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.314 11.110 -30.567 34.120 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.179 4.179 4 C 0.318 3.682 5 O -0.472 6.472 6 N -0.337 5.337 7 C -0.027 4.027 8 C -0.100 4.100 9 H 0.158 0.842 10 C -0.145 4.145 11 C -0.180 4.180 12 C 0.068 3.932 13 H 0.075 0.925 14 N -0.400 5.400 15 C -0.351 4.351 16 H 0.085 0.915 17 C -0.247 4.247 18 N -0.631 5.631 19 Si 0.763 3.237 20 H -0.208 1.208 21 H -0.218 1.218 22 H -0.195 1.195 23 C -0.119 4.119 24 H 0.117 0.883 25 C -0.010 4.010 26 C -0.080 4.080 27 C -0.153 4.153 28 C -0.143 4.143 29 C -0.138 4.138 30 C -0.134 4.134 31 C -0.122 4.122 32 H 0.071 0.929 33 H 0.119 0.881 34 H 0.101 0.899 35 H 0.060 0.940 36 H 0.116 0.884 37 H 0.072 0.928 38 H 0.111 0.889 39 H 0.111 0.889 40 H 0.113 0.887 41 H 0.070 0.930 42 H 0.089 0.911 43 H 0.060 0.940 44 H 0.196 0.804 45 H 0.066 0.934 46 H 0.070 0.930 47 H 0.061 0.939 48 H 0.116 0.884 49 H 0.144 0.856 50 H 0.160 0.840 51 H 0.168 0.832 52 H 0.165 0.835 Dipole moment (debyes) X Y Z Total from point charges -9.931 11.313 -30.022 33.585 hybrid contribution 1.085 0.788 1.809 2.252 sum -8.846 12.101 -28.213 31.948 Atomic orbital electron populations 1.22103 0.89619 1.04921 1.03397 1.19742 0.98937 0.95867 0.88711 1.21703 1.00781 0.92409 1.03055 1.20930 0.79042 0.80391 0.87824 1.90695 1.41883 1.66225 1.48348 1.48548 1.47840 1.09395 1.27914 1.22672 0.94632 0.90335 0.95084 1.23250 0.92899 0.96593 0.97216 0.84238 1.22407 0.98513 0.98752 0.94793 1.22758 0.96423 1.00063 0.98786 1.20979 0.92384 0.95993 0.83819 0.92522 1.43168 1.75609 1.06614 1.14589 1.19107 1.31484 0.91776 0.92688 0.91485 1.25254 1.02439 1.00472 0.96555 1.69835 1.51563 1.35189 1.06501 0.85738 0.77696 0.82576 0.77656 1.20823 1.21838 1.19499 1.23130 0.99989 0.92105 0.96700 0.88258 1.21942 0.98005 0.90864 0.90171 1.19451 0.98114 0.96535 0.93950 1.21216 0.98009 0.97170 0.98872 1.21270 1.00223 1.00187 0.92617 1.21467 0.97376 0.97590 0.97399 1.21473 0.96888 0.95615 0.99399 1.21146 1.00163 1.00322 0.90563 0.92878 0.88142 0.89943 0.93963 0.88406 0.92834 0.88944 0.88913 0.88689 0.93026 0.91080 0.94037 0.80402 0.93385 0.92956 0.93920 0.88409 0.85596 0.84035 0.83219 0.83502 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.01 7.56 71.98 0.54 -1.46 16 2 C -0.03 -0.60 0.59 -53.67 -0.03 -0.63 16 3 C -0.12 -2.44 7.64 71.98 0.55 -1.89 16 4 C 0.53 15.94 5.24 87.66 0.46 16.40 16 5 O -0.59 -23.94 16.20 -3.04 -0.05 -23.99 16 6 N -0.60 -16.66 2.19 -813.63 -1.78 -18.44 16 7 C 0.09 1.76 4.25 86.71 0.37 2.13 16 8 C -0.08 -1.58 4.25 -8.58 -0.04 -1.61 16 9 H 0.14 1.89 8.14 -2.39 -0.02 1.87 16 10 C -0.11 -2.39 5.59 31.65 0.18 -2.21 16 11 C -0.14 -4.38 6.56 31.27 0.21 -4.17 16 12 C 0.18 6.37 3.24 45.52 0.15 6.52 16 13 H 0.06 2.11 8.09 -2.39 -0.02 2.09 16 14 N -0.76 -35.95 4.60 -320.43 -1.47 -37.42 16 15 C -0.22 -12.64 10.44 84.03 0.88 -11.77 16 16 H 0.07 4.13 8.06 -2.91 -0.02 4.11 16 17 C -0.06 -3.38 5.50 84.86 0.47 -2.92 16 18 N -0.98 -64.16 13.97 21.65 0.30 -63.85 16 19 Si 0.93 49.23 27.74 68.60 1.90 51.14 16 20 H -0.28 -14.63 7.11 99.48 0.71 -13.92 16 21 H -0.29 -15.40 7.11 99.48 0.71 -14.69 16 22 H -0.27 -13.71 6.52 99.48 0.65 -13.06 16 23 C -0.10 -2.85 4.03 -8.96 -0.04 -2.89 16 24 H 0.10 2.70 8.14 -2.38 -0.02 2.68 16 25 C 0.11 3.89 4.38 86.68 0.38 4.27 16 26 C -0.08 -1.41 3.67 -19.87 -0.07 -1.48 16 27 C -0.13 -2.77 6.50 22.27 0.14 -2.63 16 28 C -0.12 -2.08 10.05 22.27 0.22 -1.85 16 29 C -0.12 -1.47 10.05 22.27 0.22 -1.25 16 30 C -0.12 -1.20 10.05 22.27 0.22 -0.97 16 31 C -0.10 -1.24 8.93 22.27 0.20 -1.04 16 32 H 0.05 0.88 8.06 -2.39 -0.02 0.87 16 33 H 0.10 0.82 7.47 -2.39 -0.02 0.80 16 34 H 0.08 0.97 5.15 -2.39 -0.01 0.96 16 35 H 0.04 1.00 8.14 -2.39 -0.02 0.98 16 36 H 0.10 1.23 7.97 -2.39 -0.02 1.21 16 37 H 0.05 1.22 7.93 -2.39 -0.02 1.20 16 38 H 0.09 1.42 5.60 -2.39 -0.01 1.41 16 39 H 0.09 1.53 4.92 -2.39 -0.01 1.52 16 40 H 0.09 1.56 8.14 -2.39 -0.02 1.54 16 41 H 0.05 1.29 7.28 -2.39 -0.02 1.28 16 42 H 0.07 2.00 8.14 -2.39 -0.02 1.98 16 43 H 0.04 1.57 7.91 -2.39 -0.02 1.55 16 44 H 0.36 17.45 3.19 -92.70 -0.30 17.15 16 45 H 0.26 16.14 8.31 -92.70 -0.77 15.37 16 46 H 0.05 2.04 6.30 -2.38 -0.02 2.02 16 47 H 0.04 1.72 8.07 -2.39 -0.02 1.70 16 48 H 0.10 2.58 5.69 -2.91 -0.02 2.57 16 49 H 0.13 1.90 8.06 -2.91 -0.02 1.87 16 50 H 0.14 1.10 8.06 -2.91 -0.02 1.08 16 51 H 0.15 0.72 8.06 -2.91 -0.02 0.70 16 52 H 0.15 1.01 7.44 -2.91 -0.02 0.98 16 Total: -1.00 -78.68 386.24 4.48 -74.20 By element: Atomic # 1 Polarization: 27.26 SS G_CDS: 0.56 Total: 27.82 kcal Atomic # 6 Polarization: -14.47 SS G_CDS: 5.01 Total: -9.46 kcal Atomic # 7 Polarization: -116.76 SS G_CDS: -2.95 Total: -119.71 kcal Atomic # 8 Polarization: -23.94 SS G_CDS: -0.05 Total: -23.99 kcal Atomic # 14 Polarization: 49.23 SS G_CDS: 1.90 Total: 51.14 kcal Total: -78.68 4.48 -74.20 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026412784.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 73.568 kcal (2) G-P(sol) polarization free energy of solvation -78.684 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.479 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.205 kcal (6) G-S(sol) free energy of system = (1) + (5) -0.637 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 2.89 seconds