Wall clock time and date at job start Wed Apr 1 2020 03:26:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47375 * 2 1 4 4 C 1.50699 * 109.47159 * 120.00417 * 2 1 3 5 5 O 1.21285 * 119.99620 * 240.36873 * 4 2 1 6 6 N 1.34780 * 120.00479 * 60.36107 * 4 2 1 7 7 C 1.47206 * 126.69733 * 356.19720 * 6 4 2 8 8 C 1.53780 * 106.37886 * 148.68266 * 7 6 4 9 9 H 1.09006 * 111.70829 * 256.36963 * 8 7 6 10 10 C 1.54322 * 109.06352 * 132.42390 * 8 7 6 11 11 C 1.55050 * 103.93728 * 222.03056 * 10 8 7 12 12 C 1.55058 * 102.10895 * 40.05575 * 11 10 8 13 13 H 1.09007 * 110.53292 * 78.69740 * 12 11 10 14 14 N 1.46495 * 110.53696 * 201.32820 * 12 11 10 15 15 C 1.36938 * 120.00228 * 273.54797 * 14 12 11 16 16 H 1.08001 * 119.99843 * 0.02562 * 15 14 12 17 17 C 1.38812 * 120.00131 * 179.97438 * 15 14 12 18 18 N 1.31623 * 119.99651 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00138 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46812 * 269.99838 * 19 17 15 21 21 H 1.48500 * 109.46910 * 150.00127 * 19 17 15 22 22 H 1.48500 * 109.47100 * 29.99624 * 19 17 15 23 23 C 1.54322 * 103.93730 * 319.94651 * 12 11 10 24 24 H 1.09003 * 111.68469 * 262.79104 * 23 12 11 25 25 C 1.47205 * 126.70399 * 176.14618 * 6 4 2 26 26 C 1.50704 * 109.47001 * 239.99816 * 2 1 3 27 27 C 1.38232 * 119.99952 * 233.02392 * 26 2 1 28 28 C 1.38237 * 119.99762 * 179.78832 * 27 26 2 29 29 C 1.38235 * 119.99767 * 0.44036 * 28 27 26 30 30 C 1.38232 * 120.00147 * 359.80927 * 29 28 27 31 31 C 1.38231 * 120.00228 * 359.97438 * 30 29 28 32 32 H 1.09002 * 109.46665 * 292.47394 * 1 2 3 33 33 H 1.09003 * 109.47179 * 52.47123 * 1 2 3 34 34 H 1.09000 * 109.47556 * 172.47194 * 1 2 3 35 35 H 1.08994 * 109.47069 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47087 * 300.00183 * 3 2 1 37 37 H 1.08999 * 109.47206 * 59.99956 * 3 2 1 38 38 H 1.09004 * 110.08094 * 29.45214 * 7 6 4 39 39 H 1.09004 * 110.07378 * 267.91086 * 7 6 4 40 40 H 1.09007 * 110.53904 * 103.41887 * 10 8 7 41 41 H 1.08997 * 110.65453 * 340.70489 * 10 8 7 42 42 H 1.08996 * 110.90479 * 281.85535 * 11 10 8 43 43 H 1.08998 * 110.93633 * 158.26681 * 11 10 8 44 44 H 0.97005 * 119.99629 * 93.54283 * 14 12 11 45 45 H 0.96994 * 120.00015 * 0.02562 * 18 17 15 46 46 H 1.09004 * 110.07324 * 330.55406 * 25 6 4 47 47 H 1.09007 * 110.07566 * 92.03024 * 25 6 4 48 48 H 1.07997 * 119.99973 * 359.97438 * 27 26 2 49 49 H 1.07998 * 120.00380 * 180.26933 * 28 27 26 50 50 H 1.08009 * 119.99844 * 179.83536 * 29 28 27 51 51 H 1.08004 * 119.99520 * 180.02562 * 30 29 28 52 52 H 1.07998 * 120.00152 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7241 -0.1191 2.0321 6 7 1.7128 -2.0030 1.4400 7 6 0.8256 -2.8354 0.6112 8 6 1.3583 -4.2742 0.7159 9 1 1.9035 -4.5685 -0.1809 10 6 0.1802 -5.2280 1.0057 11 6 0.7421 -6.2018 2.0734 12 6 1.5679 -5.2512 2.9782 13 1 0.9128 -4.7031 3.6554 14 7 2.5717 -6.0043 3.7340 15 6 2.2391 -6.5767 4.9328 16 1 1.2365 -6.4732 5.3208 17 6 3.1901 -7.2908 5.6486 18 7 4.4115 -7.4181 5.1749 19 14 2.7362 -8.0721 7.2835 20 1 2.9951 -7.1071 8.3821 21 1 3.5557 -9.2926 7.4933 22 1 1.2969 -8.4377 7.2747 23 6 2.2493 -4.2891 1.9825 24 1 3.2692 -4.5999 1.7559 25 6 2.1837 -2.8582 2.5418 26 6 2.0324 -0.7105 -1.2305 27 6 2.9416 -1.7445 -1.1087 28 6 3.3990 -2.3991 -2.2371 29 6 2.9541 -2.0135 -3.4878 30 6 2.0487 -0.9761 -3.6099 31 6 1.5879 -0.3244 -2.4813 32 1 -0.3633 0.3929 0.9497 33 1 -0.3634 0.6260 -0.8150 34 1 -0.3634 -1.0188 -0.1346 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 0.8573 -2.4992 -0.4252 39 1 -0.1953 -2.7859 0.9900 40 1 -0.1029 -5.7711 0.1040 41 1 -0.6723 -4.6765 1.4022 42 1 1.3822 -6.9551 1.6142 43 1 -0.0650 -6.6706 2.6362 44 1 3.4721 -6.0977 3.3852 45 1 4.6471 -7.0127 4.3258 46 1 3.1735 -2.5379 2.8672 47 1 1.4834 -2.8133 3.3759 48 1 3.2923 -2.0430 -0.1319 49 1 4.1061 -3.2098 -2.1418 50 1 3.3135 -2.5232 -4.3697 51 1 1.7008 -0.6752 -4.5871 52 1 0.8809 0.4864 -2.5767 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001026412785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:56 Heat of formation + Delta-G solvation = 4.427859 kcal Electronic energy + Delta-G solvation = -31436.449954 eV Core-core repulsion = 27593.677143 eV Total energy + Delta-G solvation = -3842.772811 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.30709 -39.42454 -38.45869 -35.45503 -35.29393 -33.62903 -31.25496 -30.96663 -30.03766 -29.55289 -28.38526 -27.41508 -25.20776 -24.59800 -23.25523 -22.93228 -22.60358 -21.12159 -20.31547 -19.21784 -18.79860 -17.85198 -17.30743 -16.53295 -16.12076 -15.65774 -15.42227 -15.02389 -14.60567 -14.58371 -14.18004 -14.07538 -13.89458 -13.66573 -13.55488 -13.40322 -13.17738 -12.76832 -12.69243 -12.50609 -12.38449 -12.26901 -12.07361 -11.92456 -11.61914 -11.45738 -11.32129 -11.08800 -10.98267 -10.87612 -10.68811 -10.52374 -10.42299 -10.33958 -10.17152 -10.00720 -9.69559 -9.16670 -9.12918 -8.91942 -8.88109 -8.63112 -7.02707 -6.10313 -3.10382 1.08274 1.17239 2.55786 2.94742 3.51896 3.53005 3.56584 3.70287 4.17813 4.28585 4.52537 4.61053 4.67141 4.71369 4.76587 4.80993 4.83826 4.89970 4.94875 5.22404 5.25271 5.29389 5.31548 5.36491 5.40397 5.49419 5.50609 5.57358 5.59359 5.61425 5.69276 5.73685 5.79769 5.81689 5.83336 5.86476 5.91570 5.99285 6.02339 6.12914 6.16334 6.23237 6.24861 6.30276 6.33144 6.37530 6.42639 6.57199 6.71731 6.74505 6.94882 7.54556 7.81411 8.12294 8.75388 9.22059 10.08343 10.22828 11.38062 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.002931 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.251928 B = 9549.800653 C =10058.772211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.038 4.038 3 C -0.123 4.123 4 C 0.540 3.460 5 O -0.537 6.537 6 N -0.613 5.613 7 C 0.098 3.902 8 C -0.097 4.097 9 H 0.085 0.915 10 C -0.117 4.117 11 C -0.141 4.141 12 C 0.190 3.810 13 H 0.056 0.944 14 N -0.732 5.732 15 C -0.330 4.330 16 H 0.064 0.936 17 C -0.044 4.044 18 N -0.944 5.944 19 Si 1.081 2.919 20 H -0.295 1.295 21 H -0.288 1.288 22 H -0.295 1.295 23 C -0.105 4.105 24 H 0.086 0.914 25 C 0.115 3.885 26 C -0.074 4.074 27 C -0.112 4.112 28 C -0.114 4.114 29 C -0.120 4.120 30 C -0.120 4.120 31 C -0.110 4.110 32 H 0.064 0.936 33 H 0.069 0.931 34 H 0.069 0.931 35 H 0.063 0.937 36 H 0.063 0.937 37 H 0.066 0.934 38 H 0.082 0.918 39 H 0.069 0.931 40 H 0.060 0.940 41 H 0.064 0.936 42 H 0.064 0.936 43 H 0.060 0.940 44 H 0.367 0.633 45 H 0.255 0.745 46 H 0.077 0.923 47 H 0.072 0.928 48 H 0.128 0.872 49 H 0.123 0.877 50 H 0.121 0.879 51 H 0.122 0.878 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.416 14.431 -19.783 26.235 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.041 4.041 3 C -0.180 4.180 4 C 0.328 3.672 5 O -0.413 6.413 6 N -0.346 5.346 7 C -0.025 4.025 8 C -0.117 4.117 9 H 0.103 0.897 10 C -0.155 4.155 11 C -0.182 4.182 12 C 0.079 3.921 13 H 0.074 0.926 14 N -0.374 5.374 15 C -0.461 4.461 16 H 0.082 0.918 17 C -0.242 4.242 18 N -0.589 5.589 19 Si 0.912 3.088 20 H -0.223 1.223 21 H -0.214 1.214 22 H -0.222 1.222 23 C -0.125 4.125 24 H 0.104 0.896 25 C -0.007 4.007 26 C -0.074 4.074 27 C -0.130 4.130 28 C -0.132 4.132 29 C -0.138 4.138 30 C -0.138 4.138 31 C -0.128 4.128 32 H 0.083 0.917 33 H 0.088 0.912 34 H 0.088 0.912 35 H 0.083 0.917 36 H 0.082 0.918 37 H 0.086 0.914 38 H 0.100 0.900 39 H 0.087 0.913 40 H 0.078 0.922 41 H 0.083 0.917 42 H 0.083 0.917 43 H 0.079 0.921 44 H 0.200 0.800 45 H 0.066 0.934 46 H 0.095 0.905 47 H 0.090 0.910 48 H 0.145 0.855 49 H 0.141 0.859 50 H 0.139 0.861 51 H 0.140 0.860 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -8.651 13.963 -17.941 24.325 hybrid contribution -0.354 0.724 -1.432 1.643 sum -9.005 14.687 -19.373 25.925 Atomic orbital electron populations 1.22040 0.91788 1.03411 1.02983 1.19751 0.97360 0.96492 0.90502 1.21673 1.02120 0.92064 1.02171 1.19996 0.79964 0.80255 0.86945 1.90719 1.38632 1.65025 1.46933 1.48651 1.47613 1.10000 1.28324 1.22581 0.93513 0.90374 0.96018 1.22543 0.97082 0.93684 0.98395 0.89676 1.22498 0.96336 0.97366 0.99288 1.23267 0.99938 0.98237 0.96757 1.21170 0.90351 0.90251 0.90293 0.92584 1.42447 1.09508 1.62811 1.22589 1.20047 0.98143 1.30261 0.97689 0.91767 1.25743 0.93932 0.99819 1.04711 1.70851 1.18936 1.47599 1.21534 0.83217 0.74300 0.76437 0.74832 1.22323 1.21420 1.22176 1.22863 1.00079 0.94507 0.95068 0.89552 1.22168 1.00838 0.88663 0.89073 1.19509 0.97834 0.96473 0.93614 1.21390 0.96562 0.95486 0.99607 1.21173 0.99861 0.99853 0.92354 1.21184 0.97738 0.97433 0.97474 1.21100 0.97871 0.96519 0.98335 1.20896 1.00278 1.00057 0.91550 0.91656 0.91179 0.91211 0.91742 0.91849 0.91448 0.89965 0.91272 0.92166 0.91694 0.91719 0.92120 0.79976 0.93364 0.90495 0.90976 0.85469 0.85899 0.86119 0.86047 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.22 7.77 37.16 0.29 -0.93 16 2 C -0.04 -0.40 0.59 -156.81 -0.09 -0.50 16 3 C -0.12 -1.25 7.63 37.16 0.28 -0.96 16 4 C 0.54 7.73 5.27 -10.98 -0.06 7.68 16 5 O -0.54 -9.76 16.24 5.55 0.09 -9.67 16 6 N -0.61 -8.29 2.21 -171.59 -0.38 -8.67 16 7 C 0.10 1.10 3.89 -3.25 -0.01 1.08 16 8 C -0.10 -1.20 3.91 -88.53 -0.35 -1.55 16 9 H 0.08 1.00 8.14 -51.93 -0.42 0.58 16 10 C -0.12 -1.46 6.34 -24.96 -0.16 -1.61 16 11 C -0.14 -2.36 6.60 -24.56 -0.16 -2.52 16 12 C 0.19 3.59 3.01 -66.15 -0.20 3.39 16 13 H 0.06 1.11 7.17 -51.92 -0.37 0.74 16 14 N -0.73 -17.74 5.23 -51.70 -0.27 -18.01 16 15 C -0.33 -9.12 9.97 -15.06 -0.15 -9.27 16 16 H 0.06 1.76 7.83 -52.49 -0.41 1.35 16 17 C -0.04 -1.28 5.50 -17.43 -0.10 -1.38 16 18 N -0.94 -29.05 13.70 55.49 0.76 -28.29 16 19 Si 1.08 25.99 29.92 -169.99 -5.09 20.90 16 20 H -0.30 -6.95 7.11 56.52 0.40 -6.55 16 21 H -0.29 -7.00 7.11 56.52 0.40 -6.60 16 22 H -0.29 -6.68 7.11 56.52 0.40 -6.28 16 23 C -0.11 -1.64 3.60 -88.54 -0.32 -1.95 16 24 H 0.09 1.43 7.78 -51.93 -0.40 1.03 16 25 C 0.11 1.81 6.52 -3.26 -0.02 1.79 16 26 C -0.07 -0.75 3.31 -104.62 -0.35 -1.10 16 27 C -0.11 -1.27 7.11 -39.58 -0.28 -1.55 16 28 C -0.11 -1.13 10.05 -39.58 -0.40 -1.53 16 29 C -0.12 -1.02 10.05 -39.58 -0.40 -1.42 16 30 C -0.12 -0.95 10.05 -39.59 -0.40 -1.35 16 31 C -0.11 -0.92 8.82 -39.58 -0.35 -1.27 16 32 H 0.06 0.58 8.13 -51.93 -0.42 0.15 16 33 H 0.07 0.45 7.34 -51.93 -0.38 0.07 16 34 H 0.07 0.57 5.28 -51.93 -0.27 0.30 16 35 H 0.06 0.75 8.10 -51.93 -0.42 0.32 16 36 H 0.06 0.49 7.82 -51.93 -0.41 0.08 16 37 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 38 H 0.08 0.84 4.30 -51.93 -0.22 0.62 16 39 H 0.07 0.73 6.81 -51.93 -0.35 0.37 16 40 H 0.06 0.67 8.14 -51.93 -0.42 0.24 16 41 H 0.06 0.75 7.19 -51.93 -0.37 0.38 16 42 H 0.06 1.16 8.14 -51.93 -0.42 0.74 16 43 H 0.06 1.06 8.14 -51.93 -0.42 0.63 16 44 H 0.37 9.23 6.40 -40.82 -0.26 8.97 16 45 H 0.26 7.71 6.77 -40.82 -0.28 7.44 16 46 H 0.08 1.35 7.96 -51.93 -0.41 0.94 16 47 H 0.07 1.20 7.13 -51.93 -0.37 0.83 16 48 H 0.13 1.68 5.71 -52.49 -0.30 1.38 16 49 H 0.12 1.10 8.06 -52.49 -0.42 0.68 16 50 H 0.12 0.79 8.06 -52.48 -0.42 0.37 16 51 H 0.12 0.69 8.06 -52.48 -0.42 0.27 16 52 H 0.12 0.79 7.23 -52.49 -0.38 0.41 16 LS Contribution 392.42 15.07 5.91 5.91 Total: -1.00 -32.62 392.42 -10.40 -43.03 By element: Atomic # 1 Polarization: 17.96 SS G_CDS: -8.22 Total: 9.74 kcal Atomic # 6 Polarization: -11.74 SS G_CDS: -3.21 Total: -14.95 kcal Atomic # 7 Polarization: -55.08 SS G_CDS: 0.11 Total: -54.97 kcal Atomic # 8 Polarization: -9.76 SS G_CDS: 0.09 Total: -9.67 kcal Atomic # 14 Polarization: 25.99 SS G_CDS: -5.09 Total: 20.90 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -32.62 -10.40 -43.03 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026412785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 47.455 kcal (2) G-P(sol) polarization free energy of solvation -32.625 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.831 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.027 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.428 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds