Wall clock time and date at job start Wed Apr 1 2020 03:26:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.47375 * 2 1 4 4 C 1.50699 * 109.47159 * 120.00417 * 2 1 3 5 5 O 1.21285 * 119.99620 * 240.36873 * 4 2 1 6 6 N 1.34780 * 120.00479 * 60.36107 * 4 2 1 7 7 C 1.47206 * 126.69733 * 356.19720 * 6 4 2 8 8 C 1.53780 * 106.37886 * 148.68266 * 7 6 4 9 9 H 1.09006 * 111.70829 * 256.36963 * 8 7 6 10 10 C 1.54322 * 109.06352 * 132.42390 * 8 7 6 11 11 C 1.55050 * 103.93728 * 222.03056 * 10 8 7 12 12 C 1.55058 * 102.10895 * 40.05575 * 11 10 8 13 13 H 1.09007 * 110.53292 * 78.69740 * 12 11 10 14 14 N 1.46495 * 110.53696 * 201.32820 * 12 11 10 15 15 C 1.36938 * 120.00228 * 273.54797 * 14 12 11 16 16 H 1.08001 * 119.99843 * 0.02562 * 15 14 12 17 17 C 1.38812 * 120.00131 * 179.97438 * 15 14 12 18 18 N 1.31623 * 119.99651 * 359.97438 * 17 15 14 19 19 Si 1.86800 * 120.00138 * 180.02562 * 17 15 14 20 20 H 1.48504 * 109.46812 * 269.99838 * 19 17 15 21 21 H 1.48500 * 109.46910 * 150.00127 * 19 17 15 22 22 H 1.48500 * 109.47100 * 29.99624 * 19 17 15 23 23 C 1.54322 * 103.93730 * 319.94651 * 12 11 10 24 24 H 1.09003 * 111.68469 * 262.79104 * 23 12 11 25 25 C 1.47205 * 126.70399 * 176.14618 * 6 4 2 26 26 C 1.50704 * 109.47001 * 239.99816 * 2 1 3 27 27 C 1.38232 * 119.99952 * 233.02392 * 26 2 1 28 28 C 1.38237 * 119.99762 * 179.78832 * 27 26 2 29 29 C 1.38235 * 119.99767 * 0.44036 * 28 27 26 30 30 C 1.38232 * 120.00147 * 359.80927 * 29 28 27 31 31 C 1.38231 * 120.00228 * 359.97438 * 30 29 28 32 32 H 1.09002 * 109.46665 * 292.47394 * 1 2 3 33 33 H 1.09003 * 109.47179 * 52.47123 * 1 2 3 34 34 H 1.09000 * 109.47556 * 172.47194 * 1 2 3 35 35 H 1.08994 * 109.47069 * 180.02562 * 3 2 1 36 36 H 1.09004 * 109.47087 * 300.00183 * 3 2 1 37 37 H 1.08999 * 109.47206 * 59.99956 * 3 2 1 38 38 H 1.09004 * 110.08094 * 29.45214 * 7 6 4 39 39 H 1.09004 * 110.07378 * 267.91086 * 7 6 4 40 40 H 1.09007 * 110.53904 * 103.41887 * 10 8 7 41 41 H 1.08997 * 110.65453 * 340.70489 * 10 8 7 42 42 H 1.08996 * 110.90479 * 281.85535 * 11 10 8 43 43 H 1.08998 * 110.93633 * 158.26681 * 11 10 8 44 44 H 0.97005 * 119.99629 * 93.54283 * 14 12 11 45 45 H 0.96994 * 120.00015 * 0.02562 * 18 17 15 46 46 H 1.09004 * 110.07324 * 330.55406 * 25 6 4 47 47 H 1.09007 * 110.07566 * 92.03024 * 25 6 4 48 48 H 1.07997 * 119.99973 * 359.97438 * 27 26 2 49 49 H 1.07998 * 120.00380 * 180.26933 * 28 27 26 50 50 H 1.08009 * 119.99844 * 179.83536 * 29 28 27 51 51 H 1.08004 * 119.99520 * 180.02562 * 30 29 28 52 52 H 1.07998 * 120.00152 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0324 -0.7105 1.2304 5 8 2.7241 -0.1191 2.0321 6 7 1.7128 -2.0030 1.4400 7 6 0.8256 -2.8354 0.6112 8 6 1.3583 -4.2742 0.7159 9 1 1.9035 -4.5685 -0.1809 10 6 0.1802 -5.2280 1.0057 11 6 0.7421 -6.2018 2.0734 12 6 1.5679 -5.2512 2.9782 13 1 0.9128 -4.7031 3.6554 14 7 2.5717 -6.0043 3.7340 15 6 2.2391 -6.5767 4.9328 16 1 1.2365 -6.4732 5.3208 17 6 3.1901 -7.2908 5.6486 18 7 4.4115 -7.4181 5.1749 19 14 2.7362 -8.0721 7.2835 20 1 2.9951 -7.1071 8.3821 21 1 3.5557 -9.2926 7.4933 22 1 1.2969 -8.4377 7.2747 23 6 2.2493 -4.2891 1.9825 24 1 3.2692 -4.5999 1.7559 25 6 2.1837 -2.8582 2.5418 26 6 2.0324 -0.7105 -1.2305 27 6 2.9416 -1.7445 -1.1087 28 6 3.3990 -2.3991 -2.2371 29 6 2.9541 -2.0135 -3.4878 30 6 2.0487 -0.9761 -3.6099 31 6 1.5879 -0.3244 -2.4813 32 1 -0.3633 0.3929 0.9497 33 1 -0.3634 0.6260 -0.8150 34 1 -0.3634 -1.0188 -0.1346 35 1 3.1300 1.4424 -0.0005 36 1 1.6767 1.9563 -0.8900 37 1 1.6768 1.9563 0.8900 38 1 0.8573 -2.4992 -0.4252 39 1 -0.1953 -2.7859 0.9900 40 1 -0.1029 -5.7711 0.1040 41 1 -0.6723 -4.6765 1.4022 42 1 1.3822 -6.9551 1.6142 43 1 -0.0650 -6.6706 2.6362 44 1 3.4721 -6.0977 3.3852 45 1 4.6471 -7.0127 4.3258 46 1 3.1735 -2.5379 2.8672 47 1 1.4834 -2.8133 3.3759 48 1 3.2923 -2.0430 -0.1319 49 1 4.1061 -3.2098 -2.1418 50 1 3.3135 -2.5232 -4.3697 51 1 1.7008 -0.6752 -4.5871 52 1 0.8809 0.4864 -2.5767 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001026412785.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:26:55 Heat of formation + Delta-G solvation = -13.391611 kcal Electronic energy + Delta-G solvation = -31437.222664 eV Core-core repulsion = 27593.677143 eV Total energy + Delta-G solvation = -3843.545521 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.38 seconds Orbital eigenvalues (eV) -42.32446 -40.48552 -39.49168 -36.97242 -36.23543 -35.27257 -32.70510 -31.91570 -30.88900 -30.70942 -29.79337 -28.19108 -26.64771 -25.79675 -24.88049 -24.00078 -23.36601 -22.07408 -21.63346 -20.51697 -19.84245 -19.38551 -18.70188 -17.49815 -17.37179 -16.79423 -16.33822 -16.26126 -16.02856 -15.60466 -15.50599 -15.26725 -15.05806 -14.83789 -14.61408 -14.48061 -14.22473 -13.92194 -13.73604 -13.45020 -13.35986 -13.16682 -13.05888 -12.95317 -12.85872 -12.73090 -12.49354 -12.34712 -12.21762 -12.05222 -11.95266 -11.87862 -11.71161 -11.67656 -11.57308 -11.53737 -11.22295 -10.94733 -10.77123 -9.82111 -9.79996 -9.60296 -9.09364 -8.39345 -5.32585 0.40164 0.49658 1.44800 1.56168 1.66837 1.80658 1.84731 2.70017 2.85505 3.17565 3.35314 3.39452 3.51280 3.56995 3.62367 3.88347 3.95030 4.05068 4.07716 4.11393 4.17667 4.25632 4.31603 4.35388 4.38160 4.48512 4.51805 4.58297 4.61226 4.63465 4.68696 4.74007 4.81115 4.81573 4.84720 4.87204 4.93847 4.97952 5.05903 5.09338 5.15561 5.16809 5.19012 5.27579 5.29270 5.37828 5.48336 5.58764 5.61579 5.63313 5.65149 6.09420 6.44716 6.48924 6.98938 7.09488 7.99595 8.11517 9.12679 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.016953 B = 0.002931 C = 0.002783 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1651.251928 B = 9549.800653 C =10058.772211 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.031 4.031 3 C -0.121 4.121 4 C 0.533 3.467 5 O -0.588 6.588 6 N -0.608 5.608 7 C 0.103 3.897 8 C -0.087 4.087 9 H 0.098 0.902 10 C -0.101 4.101 11 C -0.136 4.136 12 C 0.181 3.819 13 H 0.046 0.954 14 N -0.747 5.747 15 C -0.324 4.324 16 H 0.066 0.934 17 C -0.107 4.107 18 N -0.978 5.978 19 Si 1.127 2.873 20 H -0.288 1.288 21 H -0.294 1.294 22 H -0.271 1.271 23 C -0.096 4.096 24 H 0.069 0.931 25 C 0.120 3.880 26 C -0.081 4.081 27 C -0.134 4.134 28 C -0.127 4.127 29 C -0.121 4.121 30 C -0.115 4.115 31 C -0.104 4.104 32 H 0.058 0.942 33 H 0.101 0.899 34 H 0.075 0.925 35 H 0.040 0.960 36 H 0.097 0.903 37 H 0.057 0.943 38 H 0.102 0.898 39 H 0.088 0.912 40 H 0.088 0.912 41 H 0.082 0.918 42 H 0.049 0.951 43 H 0.052 0.948 44 H 0.357 0.643 45 H 0.243 0.757 46 H 0.046 0.954 47 H 0.062 0.938 48 H 0.096 0.904 49 H 0.121 0.879 50 H 0.141 0.859 51 H 0.152 0.848 52 H 0.151 0.849 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.668 15.479 -23.109 30.563 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.033 4.033 3 C -0.179 4.179 4 C 0.323 3.677 5 O -0.468 6.468 6 N -0.339 5.339 7 C -0.019 4.019 8 C -0.106 4.106 9 H 0.116 0.884 10 C -0.139 4.139 11 C -0.177 4.177 12 C 0.072 3.928 13 H 0.064 0.936 14 N -0.388 5.388 15 C -0.456 4.456 16 H 0.084 0.916 17 C -0.298 4.298 18 N -0.626 5.626 19 Si 0.953 3.047 20 H -0.215 1.215 21 H -0.220 1.220 22 H -0.196 1.196 23 C -0.117 4.117 24 H 0.088 0.912 25 C -0.004 4.004 26 C -0.082 4.082 27 C -0.152 4.152 28 C -0.145 4.145 29 C -0.139 4.139 30 C -0.133 4.133 31 C -0.122 4.122 32 H 0.077 0.923 33 H 0.120 0.880 34 H 0.094 0.906 35 H 0.059 0.941 36 H 0.115 0.885 37 H 0.076 0.924 38 H 0.120 0.880 39 H 0.106 0.894 40 H 0.107 0.893 41 H 0.101 0.899 42 H 0.068 0.932 43 H 0.071 0.929 44 H 0.189 0.811 45 H 0.053 0.947 46 H 0.065 0.935 47 H 0.080 0.920 48 H 0.114 0.886 49 H 0.139 0.861 50 H 0.159 0.841 51 H 0.169 0.831 52 H 0.168 0.832 Dipole moment (debyes) X Y Z Total from point charges -11.971 15.027 -21.322 28.701 hybrid contribution 0.688 0.459 -0.451 0.942 sum -11.283 15.486 -21.773 29.004 Atomic orbital electron populations 1.22086 0.89451 1.04499 1.03959 1.19765 0.99037 0.95979 0.88568 1.21692 1.00684 0.92156 1.03343 1.20894 0.78974 0.80121 0.87662 1.90686 1.40917 1.66197 1.48999 1.48655 1.47637 1.09968 1.27668 1.22723 0.93512 0.88820 0.96810 1.22518 0.96454 0.94860 0.96781 0.88413 1.22450 0.96319 0.96252 0.98876 1.23087 0.99009 0.98171 0.97394 1.21425 0.89732 0.90917 0.90688 0.93592 1.42660 1.10225 1.63416 1.22486 1.20370 0.97908 1.28872 0.98427 0.91632 1.27138 0.93640 1.01091 1.07921 1.70962 1.20344 1.49593 1.21714 0.82622 0.75231 0.75460 0.71418 1.21534 1.21996 1.19616 1.22654 0.99726 0.93162 0.96110 0.91247 1.21907 0.99032 0.89497 0.89932 1.19469 0.98157 0.96375 0.94152 1.21226 0.98143 0.97156 0.98714 1.21252 1.00264 1.00127 0.92832 1.21464 0.97505 0.97635 0.97276 1.21481 0.96759 0.95486 0.99532 1.21174 1.00150 1.00358 0.90478 0.92325 0.88044 0.90603 0.94082 0.88472 0.92367 0.87959 0.89416 0.89321 0.89902 0.93224 0.92871 0.81050 0.94653 0.93542 0.92011 0.88580 0.86073 0.84149 0.83069 0.83186 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.92 7.77 71.98 0.56 -1.36 16 2 C -0.03 -0.60 0.59 -53.67 -0.03 -0.63 16 3 C -0.12 -2.32 7.63 71.98 0.55 -1.77 16 4 C 0.53 15.66 5.27 87.66 0.46 16.13 16 5 O -0.59 -22.83 16.24 -3.05 -0.05 -22.88 16 6 N -0.61 -16.70 2.21 -815.17 -1.80 -18.50 16 7 C 0.10 2.09 3.89 86.51 0.34 2.42 16 8 C -0.09 -2.01 3.91 -9.44 -0.04 -2.05 16 9 H 0.10 2.10 8.14 -2.38 -0.02 2.08 16 10 C -0.10 -2.23 6.34 31.74 0.20 -2.03 16 11 C -0.14 -4.48 6.60 32.00 0.21 -4.27 16 12 C 0.18 7.04 3.01 46.15 0.14 7.18 16 13 H 0.05 1.88 7.17 -2.38 -0.02 1.86 16 14 N -0.75 -37.85 5.23 -317.49 -1.66 -39.51 16 15 C -0.32 -18.38 9.97 84.03 0.84 -17.54 16 16 H 0.07 3.63 7.83 -2.91 -0.02 3.61 16 17 C -0.11 -6.32 5.50 84.86 0.47 -5.85 16 18 N -0.98 -62.47 13.70 21.65 0.30 -62.17 16 19 Si 1.13 53.13 29.92 68.60 2.05 55.18 16 20 H -0.29 -13.13 7.11 99.48 0.71 -12.42 16 21 H -0.29 -14.00 7.11 99.48 0.71 -13.29 16 22 H -0.27 -11.56 7.11 99.48 0.71 -10.85 16 23 C -0.10 -3.12 3.60 -9.45 -0.03 -3.16 16 24 H 0.07 2.49 7.78 -2.39 -0.02 2.47 16 25 C 0.12 4.04 6.52 86.50 0.56 4.60 16 26 C -0.08 -1.46 3.31 -19.86 -0.07 -1.53 16 27 C -0.13 -2.94 7.11 22.27 0.16 -2.78 16 28 C -0.13 -2.35 10.05 22.27 0.22 -2.13 16 29 C -0.12 -1.66 10.05 22.27 0.22 -1.43 16 30 C -0.11 -1.27 10.05 22.27 0.22 -1.05 16 31 C -0.10 -1.27 8.82 22.27 0.20 -1.08 16 32 H 0.06 0.89 8.13 -2.39 -0.02 0.87 16 33 H 0.10 0.76 7.34 -2.39 -0.02 0.74 16 34 H 0.08 0.93 5.28 -2.39 -0.01 0.92 16 35 H 0.04 0.96 8.10 -2.39 -0.02 0.94 16 36 H 0.10 1.16 7.82 -2.39 -0.02 1.14 16 37 H 0.06 1.20 8.10 -2.39 -0.02 1.18 16 38 H 0.10 1.76 4.30 -2.38 -0.01 1.75 16 39 H 0.09 1.52 6.81 -2.38 -0.02 1.51 16 40 H 0.09 1.57 8.14 -2.38 -0.02 1.55 16 41 H 0.08 1.60 7.19 -2.39 -0.02 1.58 16 42 H 0.05 1.78 8.14 -2.39 -0.02 1.76 16 43 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 44 H 0.36 19.17 6.40 -92.70 -0.59 18.58 16 45 H 0.24 15.51 6.77 -92.71 -0.63 14.88 16 46 H 0.05 1.82 7.96 -2.39 -0.02 1.80 16 47 H 0.06 2.19 7.13 -2.38 -0.02 2.17 16 48 H 0.10 2.68 5.71 -2.91 -0.02 2.66 16 49 H 0.12 2.16 8.06 -2.91 -0.02 2.14 16 50 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 51 H 0.15 0.82 8.06 -2.91 -0.02 0.80 16 52 H 0.15 1.00 7.23 -2.91 -0.02 0.98 16 Total: -1.00 -76.20 392.42 4.49 -71.71 By element: Atomic # 1 Polarization: 34.04 SS G_CDS: 0.47 Total: 34.51 kcal Atomic # 6 Polarization: -23.51 SS G_CDS: 5.19 Total: -18.32 kcal Atomic # 7 Polarization: -117.03 SS G_CDS: -3.17 Total: -120.19 kcal Atomic # 8 Polarization: -22.83 SS G_CDS: -0.05 Total: -22.88 kcal Atomic # 14 Polarization: 53.13 SS G_CDS: 2.05 Total: 55.18 kcal Total: -76.20 4.49 -71.71 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001026412785.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 58.315 kcal (2) G-P(sol) polarization free energy of solvation -76.195 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -17.881 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.489 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.706 kcal (6) G-S(sol) free energy of system = (1) + (5) -13.392 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.38 seconds