Wall clock time and date at job start Wed Apr 1 2020 02:27:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 119.99546 * 2 1 4 4 H 1.08005 * 119.99620 * 202.57498 * 3 2 1 5 5 C 1.38815 * 120.00283 * 22.57906 * 3 2 1 6 6 N 1.31614 * 119.99898 * 15.46115 * 5 3 2 7 7 Si 1.86800 * 119.99782 * 195.46800 * 5 3 2 8 8 H 1.48503 * 109.47168 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47118 * 119.99612 * 7 5 3 10 10 H 1.48502 * 109.46638 * 239.99432 * 7 5 3 11 11 C 1.46498 * 120.00412 * 179.97438 * 2 1 3 12 12 H 1.08998 * 109.49827 * 180.02562 * 11 2 1 13 13 C 1.53037 * 109.52697 * 300.15241 * 11 2 1 14 14 C 1.53040 * 109.54175 * 181.33041 * 13 11 2 15 15 C 1.53625 * 109.24021 * 298.51123 * 14 13 11 16 16 N 1.46925 * 108.54411 * 54.85161 * 15 14 13 17 17 C 1.34779 * 120.62820 * 126.37272 * 16 15 14 18 18 O 1.21277 * 119.99736 * 179.71825 * 17 16 15 19 19 C 1.50700 * 120.00099 * 359.71718 * 17 16 15 20 20 H 1.09004 * 115.55665 * 36.38301 * 19 17 16 21 21 C 1.52991 * 117.50144 * 250.69302 * 19 17 16 22 22 C 1.52997 * 60.00256 * 252.50943 * 21 19 17 23 23 C 1.52993 * 117.49808 * 252.51373 * 22 21 19 24 24 C 1.50700 * 117.51991 * 107.47658 * 22 21 19 25 25 C 1.38232 * 120.00024 * 206.70591 * 24 22 21 26 26 C 1.38237 * 119.99868 * 179.76348 * 25 24 22 27 27 C 1.38237 * 119.99747 * 0.51692 * 26 25 24 28 28 C 1.38237 * 120.00127 * 359.73748 * 27 26 25 29 29 C 1.38230 * 119.99882 * 26.98338 * 24 22 21 30 30 C 1.46925 * 118.74090 * 306.09142 * 16 15 14 31 31 H 1.09000 * 109.46783 * 273.05975 * 1 2 3 32 32 H 1.08995 * 109.47339 * 33.06398 * 1 2 3 33 33 H 1.09006 * 109.46491 * 153.06163 * 1 2 3 34 34 H 0.97004 * 119.99989 * 179.97438 * 6 5 3 35 35 H 1.09000 * 109.45547 * 301.35123 * 13 11 2 36 36 H 1.08997 * 109.46494 * 61.30436 * 13 11 2 37 37 H 1.09008 * 109.49372 * 58.58054 * 14 13 11 38 38 H 1.08998 * 109.49951 * 178.67725 * 14 13 11 39 39 H 1.09006 * 109.73453 * 295.11599 * 15 14 13 40 40 H 1.08997 * 109.66432 * 174.55355 * 15 14 13 41 41 H 1.09002 * 117.50205 * 145.01777 * 21 19 17 42 42 H 1.09001 * 117.49975 * 359.97438 * 21 19 17 43 43 H 1.08999 * 109.47735 * 128.62131 * 23 22 21 44 44 H 1.09005 * 109.46767 * 248.61730 * 23 22 21 45 45 H 1.08998 * 109.47731 * 8.61353 * 23 22 21 46 46 H 1.07996 * 120.00043 * 0.02562 * 25 24 22 47 47 H 1.08000 * 119.99777 * 180.23218 * 26 25 24 48 48 H 1.08000 * 119.99637 * 179.72526 * 27 26 25 49 49 H 1.08003 * 119.99695 * 179.97438 * 28 27 26 50 50 H 1.08003 * 120.00371 * 0.02562 * 29 24 22 51 51 H 1.09000 * 109.58375 * 173.64647 * 30 16 15 52 52 H 1.09000 * 109.58838 * 294.08164 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1676 1.2218 -0.3591 5 6 1.5353 2.3421 0.4616 6 7 0.4302 2.2614 1.1719 7 14 2.2770 4.0122 0.0744 8 1 3.5103 3.8310 -0.7328 9 1 1.2976 4.8230 -0.6927 10 1 2.6131 4.7102 1.3413 11 6 2.1976 -1.2687 0.0006 12 1 3.2693 -1.0699 0.0009 13 6 1.8260 -2.0734 1.2481 14 6 2.6159 -3.3840 1.2660 15 6 2.2466 -4.2146 0.0275 16 7 2.4690 -3.3926 -1.1698 17 6 3.2418 -3.8429 -2.1780 18 8 3.4136 -3.1569 -3.1633 19 6 3.8925 -5.1987 -2.0810 20 1 3.3010 -5.9700 -1.5877 21 6 5.4099 -5.2421 -1.8902 22 6 4.7967 -5.6327 -3.2364 23 6 4.8014 -7.1161 -3.6109 24 6 4.9680 -4.6718 -4.3846 25 6 4.0417 -4.6483 -5.4103 26 6 4.1962 -3.7635 -6.4611 27 6 5.2829 -2.9096 -6.4914 28 6 6.2121 -2.9367 -5.4683 29 6 6.0546 -3.8179 -4.4150 30 6 1.8279 -2.0730 -1.2498 31 1 -0.3633 0.0549 1.0262 32 1 -0.3634 0.8612 -0.5606 33 1 -0.3632 -0.9162 -0.4656 34 1 0.0011 3.0693 1.4947 35 1 2.0653 -1.4930 2.1391 36 1 0.7585 -2.2930 1.2340 37 1 3.6838 -3.1653 1.2551 38 1 2.3683 -3.9458 2.1666 39 1 1.1979 -4.5075 0.0801 40 1 2.8747 -5.1043 -0.0181 41 1 5.8167 -6.0419 -1.2714 42 1 5.9377 -4.2899 -1.8352 43 1 3.7961 -7.4206 -3.9020 44 1 5.4856 -7.2783 -4.4439 45 1 5.1260 -7.7062 -2.7540 46 1 3.1949 -5.3183 -5.3886 47 1 3.4704 -3.7425 -7.2606 48 1 5.4059 -2.2214 -7.3146 49 1 7.0613 -2.2698 -5.4923 50 1 6.7811 -3.8396 -3.6160 51 1 2.1799 -1.5492 -2.1385 52 1 0.7459 -2.1948 -1.2992 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027497196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:28 Heat of formation + Delta-G solvation = 46.103155 kcal Electronic energy + Delta-G solvation = -30985.540076 eV Core-core repulsion = 27144.574441 eV Total energy + Delta-G solvation = -3840.965635 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.51 seconds Orbital eigenvalues (eV) -40.63522 -39.08445 -37.58890 -36.48486 -35.02762 -32.27138 -31.27452 -30.82305 -30.53324 -29.10392 -28.50251 -26.00594 -25.54770 -23.98036 -23.16836 -22.93622 -22.05399 -21.57381 -19.97085 -19.08816 -18.42222 -17.34684 -16.69477 -16.57230 -15.61439 -15.10960 -15.02561 -14.65207 -14.62127 -14.41516 -13.99596 -13.95435 -13.69918 -13.41676 -13.30855 -13.19322 -13.04198 -12.67168 -12.59740 -12.32873 -12.27595 -12.23743 -12.00187 -11.84689 -11.08514 -11.01857 -10.96476 -10.90216 -10.85225 -10.63635 -10.52221 -10.39854 -10.27416 -10.09837 -10.04861 -9.85363 -9.74543 -9.46579 -8.68191 -8.57940 -8.28945 -8.23307 -6.73083 -5.71520 -3.15973 1.56811 1.64595 2.70004 3.17491 3.39969 3.47633 3.50725 3.65266 3.98047 4.39188 4.51914 4.54811 4.60615 4.77522 4.92414 5.04816 5.13571 5.15489 5.21233 5.25217 5.31101 5.42133 5.47061 5.48328 5.51159 5.52256 5.57779 5.63719 5.73890 5.78108 5.79836 5.83856 5.91320 5.93971 6.04316 6.19508 6.20183 6.21974 6.26831 6.42240 6.55914 6.65810 6.70336 6.70507 6.78490 6.83449 6.97984 7.04062 7.21734 7.37421 7.71258 7.73372 7.84072 8.40765 8.50955 9.25014 9.88371 10.36984 11.33813 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012029 B = 0.003315 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.158608 B = 8443.290484 C = 9944.910306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.162 3.838 2 N -0.592 5.592 3 C -0.254 4.254 4 H 0.068 0.932 5 C 0.003 3.997 6 N -0.905 5.905 7 Si 0.902 3.098 8 H -0.278 1.278 9 H -0.289 1.289 10 H -0.291 1.291 11 C 0.170 3.830 12 H 0.063 0.937 13 C -0.132 4.132 14 C -0.131 4.131 15 C 0.109 3.891 16 N -0.604 5.604 17 C 0.534 3.466 18 O -0.520 6.520 19 C -0.174 4.174 20 H 0.123 0.877 21 C -0.143 4.143 22 C -0.062 4.062 23 C -0.111 4.111 24 C -0.014 4.014 25 C -0.092 4.092 26 C -0.117 4.117 27 C -0.126 4.126 28 C -0.117 4.117 29 C -0.110 4.110 30 C 0.100 3.900 31 H 0.028 0.972 32 H 0.042 0.958 33 H -0.001 1.001 34 H 0.251 0.749 35 H 0.066 0.934 36 H 0.056 0.944 37 H 0.063 0.937 38 H 0.067 0.933 39 H 0.064 0.936 40 H 0.079 0.921 41 H 0.106 0.894 42 H 0.102 0.898 43 H 0.062 0.938 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.110 0.890 47 H 0.114 0.886 48 H 0.114 0.886 49 H 0.115 0.885 50 H 0.113 0.887 51 H 0.088 0.912 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.079 -20.996 -7.414 23.687 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.017 3.983 2 N -0.314 5.314 3 C -0.383 4.383 4 H 0.086 0.914 5 C -0.195 4.195 6 N -0.550 5.550 7 Si 0.732 3.268 8 H -0.203 1.203 9 H -0.216 1.216 10 H -0.218 1.218 11 C 0.061 3.939 12 H 0.081 0.919 13 C -0.172 4.172 14 C -0.170 4.170 15 C -0.014 4.014 16 N -0.337 5.337 17 C 0.321 3.679 18 O -0.396 6.396 19 C -0.196 4.196 20 H 0.141 0.859 21 C -0.180 4.180 22 C -0.063 4.063 23 C -0.168 4.168 24 C -0.014 4.014 25 C -0.110 4.110 26 C -0.135 4.135 27 C -0.144 4.144 28 C -0.135 4.135 29 C -0.128 4.128 30 C -0.024 4.024 31 H 0.046 0.954 32 H 0.061 0.939 33 H 0.017 0.983 34 H 0.061 0.939 35 H 0.084 0.916 36 H 0.074 0.926 37 H 0.082 0.918 38 H 0.085 0.915 39 H 0.082 0.918 40 H 0.097 0.903 41 H 0.125 0.875 42 H 0.121 0.879 43 H 0.081 0.919 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.128 0.872 47 H 0.132 0.868 48 H 0.132 0.868 49 H 0.133 0.867 50 H 0.131 0.869 51 H 0.107 0.893 52 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges 8.042 -20.442 -7.883 23.338 hybrid contribution 0.000 1.103 0.235 1.128 sum 8.042 -19.339 -7.649 22.297 Atomic orbital electron populations 1.20760 0.82732 0.95729 0.99064 1.43895 1.01757 1.00090 1.85627 1.19261 0.98177 0.85242 1.35626 0.91435 1.24963 0.98125 0.98384 0.98065 1.70089 1.20767 1.26989 1.37200 0.86222 0.78554 0.84425 0.77612 1.20276 1.21589 1.21791 1.20571 0.96324 0.86211 0.90781 0.91877 1.22112 0.99355 0.94733 1.00954 1.21997 1.01009 0.97383 0.96589 1.21820 1.00954 0.93593 0.85043 1.48114 1.49087 1.18744 1.17783 1.19562 0.78799 0.86737 0.82791 1.90776 1.60695 1.57734 1.30386 1.22454 0.94545 0.97638 1.04913 0.85890 1.23202 0.92571 1.03878 0.98352 1.20210 1.02723 0.95196 0.88166 1.21338 1.02380 0.91173 1.01889 1.18605 0.94522 0.94967 0.93310 1.20645 0.97696 0.98782 0.93864 1.20970 0.97709 0.96342 0.98474 1.21004 0.95263 0.99263 0.98899 1.20979 0.99311 0.98621 0.94632 1.20805 0.97778 0.96053 0.98195 1.22357 0.96628 0.81501 1.01892 0.95372 0.93879 0.98283 0.93860 0.91556 0.92558 0.91812 0.91482 0.91776 0.90311 0.87547 0.87946 0.91874 0.91542 0.91899 0.87179 0.86765 0.86785 0.86691 0.86865 0.89320 0.92157 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.98 8.06 59.85 0.48 4.46 16 2 N -0.59 -14.91 2.81 -173.34 -0.49 -15.40 16 3 C -0.25 -7.10 9.57 -15.06 -0.14 -7.24 16 4 H 0.07 1.89 7.83 -52.48 -0.41 1.48 16 5 C 0.00 0.08 5.03 -17.43 -0.09 0.00 16 6 N -0.91 -26.53 10.84 55.49 0.60 -25.93 16 7 Si 0.90 22.29 29.58 -169.99 -5.03 17.27 16 8 H -0.28 -6.76 7.11 56.52 0.40 -6.36 16 9 H -0.29 -7.18 7.11 56.52 0.40 -6.78 16 10 H -0.29 -7.19 7.11 56.52 0.40 -6.79 16 11 C 0.17 3.53 2.74 -67.81 -0.19 3.34 16 12 H 0.06 1.40 7.86 -51.93 -0.41 0.99 16 13 C -0.13 -2.33 5.14 -26.69 -0.14 -2.46 16 14 C -0.13 -1.72 6.10 -26.39 -0.16 -1.88 16 15 C 0.11 1.30 6.33 -3.49 -0.02 1.28 16 16 N -0.60 -9.26 2.97 -172.50 -0.51 -9.78 16 17 C 0.53 8.23 7.46 -10.98 -0.08 8.15 16 18 O -0.52 -9.82 12.56 5.56 0.07 -9.75 16 19 C -0.17 -1.93 4.62 -91.78 -0.42 -2.35 16 20 H 0.12 1.08 6.91 -51.93 -0.36 0.72 16 21 C -0.14 -1.37 9.09 -26.74 -0.24 -1.62 16 22 C -0.06 -0.65 2.32 -155.67 -0.36 -1.01 16 23 C -0.11 -0.85 9.70 37.15 0.36 -0.49 16 24 C -0.01 -0.18 2.93 -104.63 -0.31 -0.49 16 25 C -0.09 -1.22 8.52 -39.58 -0.34 -1.56 16 26 C -0.12 -1.53 10.05 -39.58 -0.40 -1.92 16 27 C -0.13 -1.63 10.05 -39.58 -0.40 -2.03 16 28 C -0.12 -1.54 10.05 -39.58 -0.40 -1.93 16 29 C -0.11 -1.46 9.02 -39.59 -0.36 -1.82 16 30 C 0.10 1.88 5.78 -3.71 -0.02 1.86 16 31 H 0.03 0.74 7.47 -51.93 -0.39 0.35 16 32 H 0.04 1.15 7.24 -51.93 -0.38 0.77 16 33 H 0.00 -0.03 6.35 -51.93 -0.33 -0.36 16 34 H 0.25 7.13 8.31 -40.82 -0.34 6.80 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.06 1.00 7.71 -51.93 -0.40 0.60 16 37 H 0.06 0.86 8.14 -51.92 -0.42 0.44 16 38 H 0.07 0.74 8.14 -51.93 -0.42 0.31 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.72 5.71 -51.93 -0.30 0.43 16 41 H 0.11 0.74 8.05 -51.93 -0.42 0.32 16 42 H 0.10 1.13 6.91 -51.93 -0.36 0.78 16 43 H 0.06 0.46 8.14 -51.93 -0.42 0.04 16 44 H 0.07 0.50 8.08 -51.93 -0.42 0.08 16 45 H 0.06 0.38 7.90 -51.93 -0.41 -0.03 16 46 H 0.11 1.34 8.06 -52.49 -0.42 0.91 16 47 H 0.11 1.26 8.06 -52.49 -0.42 0.84 16 48 H 0.11 1.24 8.06 -52.49 -0.42 0.81 16 49 H 0.12 1.28 8.06 -52.48 -0.42 0.86 16 50 H 0.11 1.33 6.78 -52.48 -0.36 0.98 16 51 H 0.09 1.92 7.00 -51.93 -0.36 1.56 16 52 H 0.06 1.14 6.49 -51.93 -0.34 0.80 16 LS Contribution 402.20 15.07 6.06 6.06 Total: -1.00 -32.43 402.20 -11.09 -43.52 By element: Atomic # 1 Polarization: 10.30 SS G_CDS: -8.57 Total: 1.72 kcal Atomic # 6 Polarization: -4.50 SS G_CDS: -3.22 Total: -7.72 kcal Atomic # 7 Polarization: -50.71 SS G_CDS: -0.40 Total: -51.10 kcal Atomic # 8 Polarization: -9.82 SS G_CDS: 0.07 Total: -9.75 kcal Atomic # 14 Polarization: 22.29 SS G_CDS: -5.03 Total: 17.27 kcal Total LS contribution 6.06 Total: 6.06 kcal Total: -32.43 -11.09 -43.52 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027497196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 89.625 kcal (2) G-P(sol) polarization free energy of solvation -32.433 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 57.192 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.089 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.521 kcal (6) G-S(sol) free energy of system = (1) + (5) 46.103 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.51 seconds