Wall clock time and date at job start Wed Apr 1 2020 02:27:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46502 * 1 3 3 C 1.36938 * 119.99546 * 2 1 4 4 H 1.08005 * 119.99620 * 202.57498 * 3 2 1 5 5 C 1.38815 * 120.00283 * 22.57906 * 3 2 1 6 6 N 1.31614 * 119.99898 * 15.46115 * 5 3 2 7 7 Si 1.86800 * 119.99782 * 195.46800 * 5 3 2 8 8 H 1.48503 * 109.47168 * 359.97438 * 7 5 3 9 9 H 1.48497 * 109.47118 * 119.99612 * 7 5 3 10 10 H 1.48502 * 109.46638 * 239.99432 * 7 5 3 11 11 C 1.46498 * 120.00412 * 179.97438 * 2 1 3 12 12 H 1.08998 * 109.49827 * 180.02562 * 11 2 1 13 13 C 1.53037 * 109.52697 * 300.15241 * 11 2 1 14 14 C 1.53040 * 109.54175 * 181.33041 * 13 11 2 15 15 C 1.53625 * 109.24021 * 298.51123 * 14 13 11 16 16 N 1.46925 * 108.54411 * 54.85161 * 15 14 13 17 17 C 1.34779 * 120.62820 * 126.37272 * 16 15 14 18 18 O 1.21277 * 119.99736 * 179.71825 * 17 16 15 19 19 C 1.50700 * 120.00099 * 359.71718 * 17 16 15 20 20 H 1.09004 * 115.55665 * 36.38301 * 19 17 16 21 21 C 1.52991 * 117.50144 * 250.69302 * 19 17 16 22 22 C 1.52997 * 60.00256 * 252.50943 * 21 19 17 23 23 C 1.52993 * 117.49808 * 252.51373 * 22 21 19 24 24 C 1.50700 * 117.51991 * 107.47658 * 22 21 19 25 25 C 1.38232 * 120.00024 * 206.70591 * 24 22 21 26 26 C 1.38237 * 119.99868 * 179.76348 * 25 24 22 27 27 C 1.38237 * 119.99747 * 0.51692 * 26 25 24 28 28 C 1.38237 * 120.00127 * 359.73748 * 27 26 25 29 29 C 1.38230 * 119.99882 * 26.98338 * 24 22 21 30 30 C 1.46925 * 118.74090 * 306.09142 * 16 15 14 31 31 H 1.09000 * 109.46783 * 273.05975 * 1 2 3 32 32 H 1.08995 * 109.47339 * 33.06398 * 1 2 3 33 33 H 1.09006 * 109.46491 * 153.06163 * 1 2 3 34 34 H 0.97004 * 119.99989 * 179.97438 * 6 5 3 35 35 H 1.09000 * 109.45547 * 301.35123 * 13 11 2 36 36 H 1.08997 * 109.46494 * 61.30436 * 13 11 2 37 37 H 1.09008 * 109.49372 * 58.58054 * 14 13 11 38 38 H 1.08998 * 109.49951 * 178.67725 * 14 13 11 39 39 H 1.09006 * 109.73453 * 295.11599 * 15 14 13 40 40 H 1.08997 * 109.66432 * 174.55355 * 15 14 13 41 41 H 1.09002 * 117.50205 * 145.01777 * 21 19 17 42 42 H 1.09001 * 117.49975 * 359.97438 * 21 19 17 43 43 H 1.08999 * 109.47735 * 128.62131 * 23 22 21 44 44 H 1.09005 * 109.46767 * 248.61730 * 23 22 21 45 45 H 1.08998 * 109.47731 * 8.61353 * 23 22 21 46 46 H 1.07996 * 120.00043 * 0.02562 * 25 24 22 47 47 H 1.08000 * 119.99777 * 180.23218 * 26 25 24 48 48 H 1.08000 * 119.99637 * 179.72526 * 27 26 25 49 49 H 1.08003 * 119.99695 * 179.97438 * 28 27 26 50 50 H 1.08003 * 120.00371 * 0.02562 * 29 24 22 51 51 H 1.09000 * 109.58375 * 173.64647 * 30 16 15 52 52 H 1.09000 * 109.58838 * 294.08164 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1860 0.0000 4 1 3.1676 1.2218 -0.3591 5 6 1.5353 2.3421 0.4616 6 7 0.4302 2.2614 1.1719 7 14 2.2770 4.0122 0.0744 8 1 3.5103 3.8310 -0.7328 9 1 1.2976 4.8230 -0.6927 10 1 2.6131 4.7102 1.3413 11 6 2.1976 -1.2687 0.0006 12 1 3.2693 -1.0699 0.0009 13 6 1.8260 -2.0734 1.2481 14 6 2.6159 -3.3840 1.2660 15 6 2.2466 -4.2146 0.0275 16 7 2.4690 -3.3926 -1.1698 17 6 3.2418 -3.8429 -2.1780 18 8 3.4136 -3.1569 -3.1633 19 6 3.8925 -5.1987 -2.0810 20 1 3.3010 -5.9700 -1.5877 21 6 5.4099 -5.2421 -1.8902 22 6 4.7967 -5.6327 -3.2364 23 6 4.8014 -7.1161 -3.6109 24 6 4.9680 -4.6718 -4.3846 25 6 4.0417 -4.6483 -5.4103 26 6 4.1962 -3.7635 -6.4611 27 6 5.2829 -2.9096 -6.4914 28 6 6.2121 -2.9367 -5.4683 29 6 6.0546 -3.8179 -4.4150 30 6 1.8279 -2.0730 -1.2498 31 1 -0.3633 0.0549 1.0262 32 1 -0.3634 0.8612 -0.5606 33 1 -0.3632 -0.9162 -0.4656 34 1 0.0011 3.0693 1.4947 35 1 2.0653 -1.4930 2.1391 36 1 0.7585 -2.2930 1.2340 37 1 3.6838 -3.1653 1.2551 38 1 2.3683 -3.9458 2.1666 39 1 1.1979 -4.5075 0.0801 40 1 2.8747 -5.1043 -0.0181 41 1 5.8167 -6.0419 -1.2714 42 1 5.9377 -4.2899 -1.8352 43 1 3.7961 -7.4206 -3.9020 44 1 5.4856 -7.2783 -4.4439 45 1 5.1260 -7.7062 -2.7540 46 1 3.1949 -5.3183 -5.3886 47 1 3.4704 -3.7425 -7.2606 48 1 5.4059 -2.2214 -7.3146 49 1 7.0613 -2.2698 -5.4923 50 1 6.7811 -3.8396 -3.6160 51 1 2.1799 -1.5492 -2.1385 52 1 0.7459 -2.1948 -1.2992 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027497196.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:26 Heat of formation + Delta-G solvation = 29.632193 kcal Electronic energy + Delta-G solvation = -30986.254310 eV Core-core repulsion = 27144.574441 eV Total energy + Delta-G solvation = -3841.679869 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.53 seconds Orbital eigenvalues (eV) -41.67767 -40.22530 -38.85719 -37.56542 -36.71328 -33.93328 -32.83481 -31.78416 -31.53147 -30.57664 -29.36289 -28.08541 -26.76434 -25.49873 -24.28861 -23.96468 -23.08388 -22.99459 -21.14198 -20.32166 -19.59443 -18.81723 -18.37042 -17.60730 -17.05695 -16.65072 -16.12697 -15.86874 -15.78412 -15.56238 -15.54441 -15.21595 -14.93021 -14.70351 -14.48950 -14.21330 -14.18152 -14.02643 -13.75019 -13.71640 -13.57549 -13.27918 -12.96455 -12.94885 -12.80984 -12.72942 -12.53496 -12.31910 -12.11936 -11.96672 -11.95497 -11.82484 -11.78742 -11.67511 -11.40255 -11.34955 -10.83141 -10.72591 -10.60990 -9.70606 -9.58761 -9.27338 -8.77674 -7.88005 -5.34784 0.59751 0.64292 1.40540 1.42698 1.53098 1.61402 2.00863 2.47834 2.77682 3.03795 3.24784 3.48241 3.61021 3.74512 3.81924 3.90433 3.99661 4.07547 4.12336 4.16897 4.20875 4.25138 4.30990 4.32243 4.36675 4.61277 4.63837 4.72216 4.74578 4.78024 4.82230 4.86601 4.90195 4.91346 4.98752 5.03342 5.03811 5.09114 5.15984 5.24155 5.24934 5.26952 5.38459 5.43348 5.48605 5.56211 5.62730 5.66460 5.68631 5.71352 5.80761 6.26368 6.28924 6.57171 7.10646 7.32453 7.82661 8.25482 9.15080 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012029 B = 0.003315 C = 0.002815 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2327.158608 B = 8443.290484 C = 9944.910306 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.610 5.610 3 C -0.267 4.267 4 H 0.058 0.942 5 C -0.046 4.046 6 N -0.931 5.931 7 Si 0.963 3.037 8 H -0.273 1.273 9 H -0.288 1.288 10 H -0.287 1.287 11 C 0.170 3.830 12 H 0.040 0.960 13 C -0.122 4.122 14 C -0.121 4.121 15 C 0.107 3.893 16 N -0.606 5.606 17 C 0.525 3.475 18 O -0.564 6.564 19 C -0.175 4.175 20 H 0.159 0.841 21 C -0.130 4.130 22 C -0.067 4.067 23 C -0.105 4.105 24 C -0.021 4.021 25 C -0.108 4.108 26 C -0.132 4.132 27 C -0.143 4.143 28 C -0.134 4.134 29 C -0.129 4.129 30 C 0.119 3.881 31 H 0.007 0.993 32 H 0.013 0.987 33 H 0.030 0.970 34 H 0.250 0.750 35 H 0.039 0.961 36 H 0.057 0.943 37 H 0.060 0.940 38 H 0.102 0.898 39 H 0.080 0.920 40 H 0.120 0.880 41 H 0.145 0.855 42 H 0.081 0.919 43 H 0.067 0.933 44 H 0.063 0.937 45 H 0.088 0.912 46 H 0.118 0.882 47 H 0.128 0.872 48 H 0.129 0.871 49 H 0.127 0.873 50 H 0.122 0.878 51 H 0.051 0.949 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.813 -24.260 -6.597 26.641 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.332 5.332 3 C -0.397 4.397 4 H 0.076 0.924 5 C -0.241 4.241 6 N -0.578 5.578 7 Si 0.791 3.209 8 H -0.198 1.198 9 H -0.215 1.215 10 H -0.213 1.213 11 C 0.062 3.938 12 H 0.058 0.942 13 C -0.162 4.162 14 C -0.160 4.160 15 C -0.014 4.014 16 N -0.339 5.339 17 C 0.314 3.686 18 O -0.442 6.442 19 C -0.195 4.195 20 H 0.177 0.823 21 C -0.167 4.167 22 C -0.068 4.068 23 C -0.162 4.162 24 C -0.021 4.021 25 C -0.126 4.126 26 C -0.150 4.150 27 C -0.161 4.161 28 C -0.152 4.152 29 C -0.147 4.147 30 C -0.007 4.007 31 H 0.026 0.974 32 H 0.031 0.969 33 H 0.048 0.952 34 H 0.059 0.941 35 H 0.058 0.942 36 H 0.075 0.925 37 H 0.079 0.921 38 H 0.120 0.880 39 H 0.098 0.902 40 H 0.138 0.862 41 H 0.163 0.837 42 H 0.100 0.900 43 H 0.086 0.914 44 H 0.082 0.918 45 H 0.107 0.893 46 H 0.136 0.864 47 H 0.146 0.854 48 H 0.147 0.853 49 H 0.145 0.855 50 H 0.140 0.860 51 H 0.070 0.930 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 8.795 -23.761 -7.054 26.300 hybrid contribution -0.197 2.128 -0.065 2.138 sum 8.599 -21.633 -7.119 24.344 Atomic orbital electron populations 1.20469 0.82620 0.95857 0.97506 1.44096 1.02101 1.01055 1.85978 1.19463 0.98076 0.86902 1.35264 0.92375 1.25658 0.98794 1.01425 0.98252 1.70218 1.21884 1.27541 1.38128 0.85269 0.77841 0.80368 0.77373 1.19822 1.21508 1.21332 1.20684 0.94488 0.85284 0.93336 0.94212 1.21927 1.00179 0.96491 0.97579 1.21950 0.99894 0.95111 0.99007 1.22127 1.02960 0.93880 0.82437 1.48191 1.48839 1.17494 1.19343 1.20435 0.78107 0.88154 0.81894 1.90765 1.61943 1.59396 1.32117 1.22478 0.95445 0.95398 1.06195 0.82332 1.23336 0.91066 1.04118 0.98142 1.20368 1.02702 0.96207 0.87481 1.21351 1.02789 0.89147 1.02914 1.18948 0.93943 0.95174 0.94066 1.20873 0.98233 0.99211 0.94278 1.21279 0.98148 0.96464 0.99116 1.21278 0.95436 0.99814 0.99575 1.21286 0.99943 0.99053 0.94906 1.21070 0.98537 0.96484 0.98591 1.21780 0.96577 0.83337 0.98967 0.97443 0.96856 0.95169 0.94113 0.94218 0.92462 0.92101 0.88003 0.90193 0.86179 0.83700 0.89999 0.91403 0.91843 0.89292 0.86444 0.85414 0.85313 0.85466 0.85992 0.93018 0.92150 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.11 8.06 127.77 1.03 10.14 16 2 N -0.61 -31.76 2.81 -702.32 -1.98 -33.74 16 3 C -0.27 -15.47 9.57 84.03 0.80 -14.67 16 4 H 0.06 3.40 7.83 -2.91 -0.02 3.37 16 5 C -0.05 -2.64 5.03 84.86 0.43 -2.22 16 6 N -0.93 -56.05 10.84 21.65 0.23 -55.82 16 7 Si 0.96 46.90 29.58 68.60 2.03 48.93 16 8 H -0.27 -12.97 7.11 99.48 0.71 -12.27 16 9 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 10 H -0.29 -13.69 7.11 99.48 0.71 -12.98 16 11 C 0.17 7.18 2.74 45.07 0.12 7.31 16 12 H 0.04 1.83 7.86 -2.39 -0.02 1.82 16 13 C -0.12 -4.23 5.14 30.62 0.16 -4.07 16 14 C -0.12 -2.78 6.10 30.82 0.19 -2.59 16 15 C 0.11 2.10 6.33 86.51 0.55 2.65 16 16 N -0.61 -17.55 2.97 -818.04 -2.43 -19.98 16 17 C 0.52 15.41 7.46 87.66 0.65 16.07 16 18 O -0.56 -21.54 12.56 -3.02 -0.04 -21.58 16 19 C -0.17 -3.21 4.62 -11.54 -0.05 -3.26 16 20 H 0.16 1.79 6.91 -2.38 -0.02 1.77 16 21 C -0.13 -2.01 9.09 30.59 0.28 -1.74 16 22 C -0.07 -1.21 2.32 -52.93 -0.12 -1.33 16 23 C -0.11 -1.21 9.70 71.98 0.70 -0.51 16 24 C -0.02 -0.54 2.93 -19.87 -0.06 -0.59 16 25 C -0.11 -2.86 8.52 22.27 0.19 -2.67 16 26 C -0.13 -3.51 10.05 22.27 0.22 -3.29 16 27 C -0.14 -3.79 10.05 22.27 0.22 -3.57 16 28 C -0.13 -3.59 10.05 22.27 0.22 -3.36 16 29 C -0.13 -3.42 9.02 22.27 0.20 -3.22 16 30 C 0.12 4.51 5.78 86.37 0.50 5.01 16 31 H 0.01 0.40 7.47 -2.39 -0.02 0.38 16 32 H 0.01 0.71 7.24 -2.39 -0.02 0.69 16 33 H 0.03 1.30 6.35 -2.38 -0.02 1.29 16 34 H 0.25 14.50 8.31 -92.71 -0.77 13.73 16 35 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 36 H 0.06 1.96 7.71 -2.39 -0.02 1.94 16 37 H 0.06 1.46 8.14 -2.38 -0.02 1.45 16 38 H 0.10 1.74 8.14 -2.39 -0.02 1.72 16 39 H 0.08 1.40 8.14 -2.38 -0.02 1.38 16 40 H 0.12 1.45 5.71 -2.39 -0.01 1.43 16 41 H 0.15 1.17 8.05 -2.39 -0.02 1.15 16 42 H 0.08 1.65 6.91 -2.39 -0.02 1.64 16 43 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.06 0.78 8.08 -2.38 -0.02 0.76 16 45 H 0.09 0.58 7.90 -2.39 -0.02 0.56 16 46 H 0.12 2.79 8.06 -2.91 -0.02 2.77 16 47 H 0.13 2.86 8.06 -2.91 -0.02 2.84 16 48 H 0.13 2.85 8.06 -2.91 -0.02 2.83 16 49 H 0.13 2.90 8.06 -2.91 -0.02 2.88 16 50 H 0.12 2.86 6.78 -2.91 -0.02 2.84 16 51 H 0.05 2.34 7.00 -2.39 -0.02 2.33 16 52 H 0.06 2.27 6.49 -2.39 -0.02 2.26 16 Total: -1.00 -75.45 402.20 4.95 -70.49 By element: Atomic # 1 Polarization: 16.71 SS G_CDS: 0.89 Total: 17.61 kcal Atomic # 6 Polarization: -12.16 SS G_CDS: 6.23 Total: -5.92 kcal Atomic # 7 Polarization: -105.37 SS G_CDS: -4.17 Total: -109.53 kcal Atomic # 8 Polarization: -21.54 SS G_CDS: -0.04 Total: -21.58 kcal Atomic # 14 Polarization: 46.90 SS G_CDS: 2.03 Total: 48.93 kcal Total: -75.45 4.95 -70.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027497196.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 100.126 kcal (2) G-P(sol) polarization free energy of solvation -75.445 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 24.681 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.951 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -70.494 kcal (6) G-S(sol) free energy of system = (1) + (5) 29.632 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.53 seconds