Wall clock time and date at job start Wed Apr 1 2020 02:27:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00170 * 2 1 4 4 H 1.08007 * 120.00523 * 157.28485 * 3 2 1 5 5 C 1.38817 * 120.00165 * 337.56482 * 3 2 1 6 6 N 1.31623 * 119.99475 * 337.57071 * 5 3 2 7 7 Si 1.86797 * 120.00290 * 157.56499 * 5 3 2 8 8 H 1.48501 * 109.47085 * 90.00135 * 7 5 3 9 9 H 1.48497 * 109.47197 * 210.00502 * 7 5 3 10 10 H 1.48499 * 109.47289 * 330.00387 * 7 5 3 11 11 C 1.46501 * 120.00054 * 179.97438 * 2 1 3 12 12 H 1.09003 * 109.49607 * 180.02562 * 11 2 1 13 13 C 1.53038 * 109.49704 * 59.94040 * 11 2 1 14 14 C 1.53038 * 109.54169 * 178.68548 * 13 11 2 15 15 C 1.53194 * 109.31452 * 61.35792 * 14 13 11 16 16 N 1.46927 * 108.77525 * 305.37283 * 15 14 13 17 17 C 1.34780 * 120.62429 * 233.60680 * 16 15 14 18 18 O 1.21283 * 119.99524 * 180.02562 * 17 16 15 19 19 C 1.50697 * 120.00242 * 0.02562 * 17 16 15 20 20 H 1.08998 * 115.55140 * 333.25482 * 19 17 16 21 21 C 1.53006 * 117.49778 * 187.55268 * 19 17 16 22 22 C 1.52998 * 59.99925 * 252.51000 * 21 19 17 23 23 C 1.52999 * 117.51941 * 252.52157 * 22 21 19 24 24 C 1.50701 * 117.50187 * 107.48770 * 22 21 19 25 25 C 1.38231 * 120.00393 * 235.73440 * 24 22 21 26 26 C 1.38234 * 120.00248 * 179.78869 * 25 24 22 27 27 C 1.38236 * 119.99700 * 0.45918 * 26 25 24 28 28 C 1.38231 * 120.00278 * 359.77202 * 27 26 25 29 29 C 1.38233 * 119.99779 * 56.00251 * 24 22 21 30 30 C 1.46929 * 118.76691 * 53.58585 * 16 15 14 31 31 H 1.08996 * 109.46979 * 85.63500 * 1 2 3 32 32 H 1.08997 * 109.46977 * 205.63130 * 1 2 3 33 33 H 1.09007 * 109.47017 * 325.63603 * 1 2 3 34 34 H 0.96998 * 119.99416 * 179.97438 * 6 5 3 35 35 H 1.09008 * 109.45905 * 298.70450 * 13 11 2 36 36 H 1.08997 * 109.46192 * 58.66086 * 13 11 2 37 37 H 1.08999 * 109.50272 * 181.31567 * 14 13 11 38 38 H 1.09009 * 109.49290 * 301.41071 * 14 13 11 39 39 H 1.09001 * 109.58063 * 65.15865 * 15 14 13 40 40 H 1.08994 * 109.58810 * 185.43542 * 15 14 13 41 41 H 1.09002 * 117.49503 * 0.02562 * 21 19 17 42 42 H 1.08992 * 117.49577 * 145.01652 * 21 19 17 43 43 H 1.08996 * 109.47483 * 128.62634 * 23 22 21 44 44 H 1.09001 * 109.47162 * 248.63199 * 23 22 21 45 45 H 1.09006 * 109.46758 * 8.62431 * 23 22 21 46 46 H 1.08002 * 120.00075 * 359.97438 * 25 24 22 47 47 H 1.08002 * 120.00169 * 180.24932 * 26 25 24 48 48 H 1.08004 * 120.00195 * 179.79219 * 27 26 25 49 49 H 1.07996 * 120.00558 * 179.97438 * 28 27 26 50 50 H 1.08002 * 119.99987 * 359.97438 * 29 24 22 51 51 H 1.09005 * 109.61231 * 186.64189 * 30 16 15 52 52 H 1.08993 * 109.56163 * 66.21561 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1669 1.2222 0.3612 5 6 1.5345 2.3426 -0.4588 6 7 0.5086 2.2612 -1.2794 7 14 2.1624 4.0146 0.0885 8 1 3.2017 4.4880 -0.8607 9 1 1.0365 4.9825 0.1128 10 1 2.7483 3.9025 1.4484 11 6 2.1975 -1.2687 0.0006 12 1 3.2693 -1.0700 0.0009 13 6 1.8271 -2.0729 -1.2477 14 6 2.6163 -3.3840 -1.2648 15 6 2.2496 -4.2124 -0.0294 16 7 2.4664 -3.3930 1.1708 17 6 3.2383 -3.8437 2.1796 18 8 3.4091 -3.1580 3.1653 19 6 3.8888 -5.1996 2.0828 20 1 3.3749 -5.9236 1.4505 21 6 4.6050 -5.7299 3.3266 22 6 5.4174 -5.2540 2.1206 23 6 6.1076 -6.3205 1.2679 24 6 6.1571 -3.9476 2.2517 25 6 5.9354 -2.9332 1.3392 26 6 6.6108 -1.7333 1.4620 27 6 7.5149 -1.5513 2.4917 28 6 7.7401 -2.5674 3.4014 29 6 7.0615 -3.7657 3.2811 30 6 1.8266 -2.0728 1.2506 31 1 -0.3633 0.0782 -1.0246 32 1 -0.3633 -0.9265 0.4445 33 1 -0.3633 0.8484 0.5801 34 1 0.0785 3.0694 -1.5996 35 1 0.7593 -2.2920 -1.2349 36 1 2.0678 -1.4925 -2.1383 37 1 2.3695 -3.9456 -2.1658 38 1 3.6843 -3.1658 -1.2526 39 1 1.2020 -4.5081 -0.0857 40 1 2.8784 -5.1016 0.0141 41 1 4.6051 -5.0982 4.2149 42 1 4.5621 -6.8030 3.5127 43 1 5.8506 -6.1697 0.2194 44 1 7.1876 -6.2421 1.3921 45 1 5.7762 -7.3094 1.5847 46 1 5.2324 -3.0770 0.5321 47 1 6.4345 -0.9393 0.7514 48 1 8.0450 -0.6150 2.5857 49 1 8.4468 -2.4254 4.2057 50 1 7.2377 -4.5597 3.9918 51 1 2.1781 -1.5490 2.1396 52 1 0.7445 -2.1940 1.2994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001027497197.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:32 Heat of formation + Delta-G solvation = 41.501238 kcal Electronic energy + Delta-G solvation = -31625.312391 eV Core-core repulsion = 27784.147202 eV Total energy + Delta-G solvation = -3841.165189 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.66 seconds Orbital eigenvalues (eV) -40.67770 -39.05573 -37.69872 -36.48790 -35.04517 -32.25317 -31.31798 -30.76242 -30.66452 -29.13307 -28.57617 -26.01516 -25.60337 -23.99641 -23.11817 -22.96888 -22.07710 -21.59463 -19.91355 -19.22620 -18.34879 -17.42728 -16.68875 -16.56883 -15.70308 -15.08042 -15.00465 -14.82574 -14.59294 -14.36976 -14.03750 -13.97305 -13.72509 -13.41802 -13.29870 -13.17869 -12.93452 -12.71958 -12.66109 -12.50238 -12.26721 -12.20681 -12.02476 -11.79877 -11.12358 -11.06450 -11.03100 -10.88355 -10.86137 -10.63835 -10.48584 -10.37771 -10.29845 -10.13371 -10.04977 -9.86711 -9.73571 -9.43142 -8.75880 -8.62045 -8.56901 -8.23774 -6.74413 -5.74175 -3.15209 1.46542 1.55386 2.63138 3.18297 3.39934 3.47486 3.52173 3.71312 3.90695 4.37983 4.50499 4.54402 4.63952 4.79013 4.90929 5.05695 5.06647 5.13426 5.18875 5.25243 5.29127 5.40997 5.48052 5.48676 5.51895 5.54955 5.58607 5.63137 5.71631 5.76194 5.81305 5.85484 5.91396 6.00452 6.02624 6.12850 6.15278 6.19755 6.25611 6.40717 6.55127 6.58785 6.65629 6.68015 6.70731 6.80627 6.96592 7.03171 7.12852 7.28845 7.64668 7.71526 7.84020 8.38972 8.49188 9.22183 9.87582 10.36674 11.31012 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.003886 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.477432 B = 7204.176177 C = 8621.144600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.157 3.843 2 N -0.589 5.589 3 C -0.257 4.257 4 H 0.067 0.933 5 C 0.006 3.994 6 N -0.898 5.898 7 Si 0.895 3.105 8 H -0.288 1.288 9 H -0.290 1.290 10 H -0.279 1.279 11 C 0.171 3.829 12 H 0.064 0.936 13 C -0.132 4.132 14 C -0.132 4.132 15 C 0.107 3.893 16 N -0.603 5.603 17 C 0.542 3.458 18 O -0.534 6.534 19 C -0.182 4.182 20 H 0.123 0.877 21 C -0.135 4.135 22 C -0.060 4.060 23 C -0.111 4.111 24 C -0.046 4.046 25 C -0.099 4.099 26 C -0.111 4.111 27 C -0.120 4.120 28 C -0.122 4.122 29 C -0.108 4.108 30 C 0.099 3.901 31 H 0.030 0.970 32 H 0.003 0.997 33 H 0.036 0.964 34 H 0.252 0.748 35 H 0.056 0.944 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.062 0.938 39 H 0.065 0.935 40 H 0.079 0.921 41 H 0.108 0.892 42 H 0.103 0.897 43 H 0.064 0.936 44 H 0.066 0.934 45 H 0.062 0.938 46 H 0.117 0.883 47 H 0.123 0.877 48 H 0.119 0.881 49 H 0.118 0.882 50 H 0.117 0.883 51 H 0.088 0.912 52 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.959 -19.556 3.893 22.289 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.012 3.988 2 N -0.311 5.311 3 C -0.386 4.386 4 H 0.084 0.916 5 C -0.193 4.193 6 N -0.542 5.542 7 Si 0.724 3.276 8 H -0.215 1.215 9 H -0.216 1.216 10 H -0.205 1.205 11 C 0.062 3.938 12 H 0.082 0.918 13 C -0.172 4.172 14 C -0.170 4.170 15 C -0.016 4.016 16 N -0.336 5.336 17 C 0.330 3.670 18 O -0.411 6.411 19 C -0.203 4.203 20 H 0.141 0.859 21 C -0.173 4.173 22 C -0.060 4.060 23 C -0.168 4.168 24 C -0.046 4.046 25 C -0.117 4.117 26 C -0.129 4.129 27 C -0.138 4.138 28 C -0.141 4.141 29 C -0.126 4.126 30 C -0.024 4.024 31 H 0.049 0.951 32 H 0.022 0.978 33 H 0.055 0.945 34 H 0.062 0.938 35 H 0.074 0.926 36 H 0.085 0.915 37 H 0.086 0.914 38 H 0.081 0.919 39 H 0.083 0.917 40 H 0.097 0.903 41 H 0.127 0.873 42 H 0.122 0.878 43 H 0.083 0.917 44 H 0.085 0.915 45 H 0.081 0.919 46 H 0.135 0.865 47 H 0.141 0.859 48 H 0.137 0.863 49 H 0.136 0.864 50 H 0.135 0.865 51 H 0.107 0.893 52 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges 9.906 -19.007 4.351 21.870 hybrid contribution -0.063 1.055 -0.003 1.056 sum 9.843 -17.952 4.347 20.930 Atomic orbital electron populations 1.20759 0.82982 0.95728 0.99314 1.43881 1.01586 1.00143 1.85465 1.19128 0.98448 0.85004 1.36066 0.91559 1.24882 0.98765 0.98182 0.97449 1.70128 1.25159 1.27299 1.31601 0.86414 0.77821 0.84441 0.78877 1.21469 1.21577 1.20469 1.20564 0.96360 0.86186 0.90673 0.91812 1.22127 0.99358 0.94677 1.01027 1.21937 1.00953 0.97502 0.96654 1.21766 1.01158 0.93691 0.84978 1.48060 1.49178 1.18810 1.17592 1.19425 0.78299 0.86598 0.82673 1.90696 1.61203 1.58003 1.31186 1.22526 0.95174 0.97692 1.04903 0.85897 1.23200 1.00328 1.01223 0.92506 1.20156 0.89187 0.95287 1.01417 1.21366 1.00541 0.95948 0.98968 1.18841 0.96833 0.93174 0.95740 1.20945 0.98890 0.93100 0.98748 1.21165 0.96127 0.97168 0.98398 1.21133 0.98608 0.98840 0.95266 1.21044 1.00169 0.93685 0.99155 1.20825 0.96737 0.97497 0.97575 1.22368 0.96652 0.81472 1.01955 0.95141 0.97801 0.94487 0.93817 0.92551 0.91471 0.91367 0.91915 0.91682 0.90255 0.87337 0.87838 0.91732 0.91514 0.91867 0.86531 0.85904 0.86318 0.86389 0.86452 0.89322 0.92135 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 3.79 8.11 59.85 0.49 4.28 16 2 N -0.59 -14.60 2.81 -173.35 -0.49 -15.09 16 3 C -0.26 -7.10 9.52 -15.06 -0.14 -7.25 16 4 H 0.07 1.83 7.88 -52.48 -0.41 1.42 16 5 C 0.01 0.18 4.88 -17.43 -0.09 0.09 16 6 N -0.90 -26.12 11.27 55.49 0.63 -25.50 16 7 Si 0.89 22.06 29.61 -169.99 -5.03 17.03 16 8 H -0.29 -7.04 7.11 56.52 0.40 -6.64 16 9 H -0.29 -7.17 7.11 56.52 0.40 -6.77 16 10 H -0.28 -6.86 7.11 56.52 0.40 -6.45 16 11 C 0.17 3.48 2.74 -67.81 -0.19 3.29 16 12 H 0.06 1.38 7.86 -51.93 -0.41 0.97 16 13 C -0.13 -2.29 5.15 -26.69 -0.14 -2.43 16 14 C -0.13 -1.69 6.08 -26.61 -0.16 -1.85 16 15 C 0.11 1.26 6.30 -3.71 -0.02 1.24 16 16 N -0.60 -9.20 2.97 -172.77 -0.51 -9.72 16 17 C 0.54 8.51 5.31 -10.99 -0.06 8.45 16 18 O -0.53 -10.55 15.07 5.56 0.08 -10.46 16 19 C -0.18 -2.09 4.90 -91.77 -0.45 -2.54 16 20 H 0.12 1.10 6.44 -51.93 -0.33 0.77 16 21 C -0.14 -1.41 9.23 -26.73 -0.25 -1.65 16 22 C -0.06 -0.64 2.17 -155.66 -0.34 -0.97 16 23 C -0.11 -0.87 9.84 37.16 0.37 -0.51 16 24 C -0.05 -0.60 4.12 -104.63 -0.43 -1.03 16 25 C -0.10 -1.44 8.25 -39.59 -0.33 -1.77 16 26 C -0.11 -1.63 10.05 -39.58 -0.40 -2.02 16 27 C -0.12 -1.60 10.05 -39.58 -0.40 -2.00 16 28 C -0.12 -1.51 10.05 -39.58 -0.40 -1.91 16 29 C -0.11 -1.35 9.57 -39.58 -0.38 -1.73 16 30 C 0.10 1.85 5.79 -3.71 -0.02 1.83 16 31 H 0.03 0.79 7.41 -51.93 -0.38 0.41 16 32 H 0.00 0.07 6.35 -51.93 -0.33 -0.26 16 33 H 0.04 0.96 7.49 -51.92 -0.39 0.57 16 34 H 0.25 7.12 8.31 -40.82 -0.34 6.78 16 35 H 0.06 0.99 7.72 -51.92 -0.40 0.59 16 36 H 0.07 1.31 8.14 -51.93 -0.42 0.89 16 37 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 38 H 0.06 0.82 8.01 -51.92 -0.42 0.41 16 39 H 0.06 0.72 8.14 -51.93 -0.42 0.30 16 40 H 0.08 0.73 5.52 -51.93 -0.29 0.44 16 41 H 0.11 1.36 7.69 -51.93 -0.40 0.96 16 42 H 0.10 0.78 8.05 -51.93 -0.42 0.36 16 43 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 44 H 0.07 0.52 8.08 -51.93 -0.42 0.10 16 45 H 0.06 0.39 7.90 -51.93 -0.41 -0.02 16 46 H 0.12 1.72 7.54 -52.49 -0.40 1.33 16 47 H 0.12 1.76 8.06 -52.49 -0.42 1.34 16 48 H 0.12 1.35 8.06 -52.48 -0.42 0.93 16 49 H 0.12 1.16 8.06 -52.49 -0.42 0.74 16 50 H 0.12 1.21 8.06 -52.49 -0.42 0.79 16 51 H 0.09 1.92 7.01 -51.93 -0.36 1.55 16 52 H 0.06 1.13 6.49 -51.93 -0.34 0.79 16 LS Contribution 405.69 15.07 6.11 6.11 Total: -1.00 -32.30 405.69 -11.16 -43.46 By element: Atomic # 1 Polarization: 11.26 SS G_CDS: -8.62 Total: 2.64 kcal Atomic # 6 Polarization: -5.14 SS G_CDS: -3.33 Total: -8.47 kcal Atomic # 7 Polarization: -49.93 SS G_CDS: -0.37 Total: -50.31 kcal Atomic # 8 Polarization: -10.55 SS G_CDS: 0.08 Total: -10.46 kcal Atomic # 14 Polarization: 22.06 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 6.11 Total: 6.11 kcal Total: -32.30 -11.16 -43.46 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027497197.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.961 kcal (2) G-P(sol) polarization free energy of solvation -32.296 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 52.665 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.164 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.460 kcal (6) G-S(sol) free energy of system = (1) + (5) 41.501 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.66 seconds