Wall clock time and date at job start Wed Apr 1 2020 02:27:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.36936 * 120.00170 * 2 1 4 4 H 1.08007 * 120.00523 * 157.28485 * 3 2 1 5 5 C 1.38817 * 120.00165 * 337.56482 * 3 2 1 6 6 N 1.31623 * 119.99475 * 337.57071 * 5 3 2 7 7 Si 1.86797 * 120.00290 * 157.56499 * 5 3 2 8 8 H 1.48501 * 109.47085 * 90.00135 * 7 5 3 9 9 H 1.48497 * 109.47197 * 210.00502 * 7 5 3 10 10 H 1.48499 * 109.47289 * 330.00387 * 7 5 3 11 11 C 1.46501 * 120.00054 * 179.97438 * 2 1 3 12 12 H 1.09003 * 109.49607 * 180.02562 * 11 2 1 13 13 C 1.53038 * 109.49704 * 59.94040 * 11 2 1 14 14 C 1.53038 * 109.54169 * 178.68548 * 13 11 2 15 15 C 1.53194 * 109.31452 * 61.35792 * 14 13 11 16 16 N 1.46927 * 108.77525 * 305.37283 * 15 14 13 17 17 C 1.34780 * 120.62429 * 233.60680 * 16 15 14 18 18 O 1.21283 * 119.99524 * 180.02562 * 17 16 15 19 19 C 1.50697 * 120.00242 * 0.02562 * 17 16 15 20 20 H 1.08998 * 115.55140 * 333.25482 * 19 17 16 21 21 C 1.53006 * 117.49778 * 187.55268 * 19 17 16 22 22 C 1.52998 * 59.99925 * 252.51000 * 21 19 17 23 23 C 1.52999 * 117.51941 * 252.52157 * 22 21 19 24 24 C 1.50701 * 117.50187 * 107.48770 * 22 21 19 25 25 C 1.38231 * 120.00393 * 235.73440 * 24 22 21 26 26 C 1.38234 * 120.00248 * 179.78869 * 25 24 22 27 27 C 1.38236 * 119.99700 * 0.45918 * 26 25 24 28 28 C 1.38231 * 120.00278 * 359.77202 * 27 26 25 29 29 C 1.38233 * 119.99779 * 56.00251 * 24 22 21 30 30 C 1.46929 * 118.76691 * 53.58585 * 16 15 14 31 31 H 1.08996 * 109.46979 * 85.63500 * 1 2 3 32 32 H 1.08997 * 109.46977 * 205.63130 * 1 2 3 33 33 H 1.09007 * 109.47017 * 325.63603 * 1 2 3 34 34 H 0.96998 * 119.99416 * 179.97438 * 6 5 3 35 35 H 1.09008 * 109.45905 * 298.70450 * 13 11 2 36 36 H 1.08997 * 109.46192 * 58.66086 * 13 11 2 37 37 H 1.08999 * 109.50272 * 181.31567 * 14 13 11 38 38 H 1.09009 * 109.49290 * 301.41071 * 14 13 11 39 39 H 1.09001 * 109.58063 * 65.15865 * 15 14 13 40 40 H 1.08994 * 109.58810 * 185.43542 * 15 14 13 41 41 H 1.09002 * 117.49503 * 0.02562 * 21 19 17 42 42 H 1.08992 * 117.49577 * 145.01652 * 21 19 17 43 43 H 1.08996 * 109.47483 * 128.62634 * 23 22 21 44 44 H 1.09001 * 109.47162 * 248.63199 * 23 22 21 45 45 H 1.09006 * 109.46758 * 8.62431 * 23 22 21 46 46 H 1.08002 * 120.00075 * 359.97438 * 25 24 22 47 47 H 1.08002 * 120.00169 * 180.24932 * 26 25 24 48 48 H 1.08004 * 120.00195 * 179.79219 * 27 26 25 49 49 H 1.07996 * 120.00558 * 179.97438 * 28 27 26 50 50 H 1.08002 * 119.99987 * 359.97438 * 29 24 22 51 51 H 1.09005 * 109.61231 * 186.64189 * 30 16 15 52 52 H 1.08993 * 109.56163 * 66.21561 * 30 16 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1497 1.1859 0.0000 4 1 3.1669 1.2222 0.3612 5 6 1.5345 2.3426 -0.4588 6 7 0.5086 2.2612 -1.2794 7 14 2.1624 4.0146 0.0885 8 1 3.2017 4.4880 -0.8607 9 1 1.0365 4.9825 0.1128 10 1 2.7483 3.9025 1.4484 11 6 2.1975 -1.2687 0.0006 12 1 3.2693 -1.0700 0.0009 13 6 1.8271 -2.0729 -1.2477 14 6 2.6163 -3.3840 -1.2648 15 6 2.2496 -4.2124 -0.0294 16 7 2.4664 -3.3930 1.1708 17 6 3.2383 -3.8437 2.1796 18 8 3.4091 -3.1580 3.1653 19 6 3.8888 -5.1996 2.0828 20 1 3.3749 -5.9236 1.4505 21 6 4.6050 -5.7299 3.3266 22 6 5.4174 -5.2540 2.1206 23 6 6.1076 -6.3205 1.2679 24 6 6.1571 -3.9476 2.2517 25 6 5.9354 -2.9332 1.3392 26 6 6.6108 -1.7333 1.4620 27 6 7.5149 -1.5513 2.4917 28 6 7.7401 -2.5674 3.4014 29 6 7.0615 -3.7657 3.2811 30 6 1.8266 -2.0728 1.2506 31 1 -0.3633 0.0782 -1.0246 32 1 -0.3633 -0.9265 0.4445 33 1 -0.3633 0.8484 0.5801 34 1 0.0785 3.0694 -1.5996 35 1 0.7593 -2.2920 -1.2349 36 1 2.0678 -1.4925 -2.1383 37 1 2.3695 -3.9456 -2.1658 38 1 3.6843 -3.1658 -1.2526 39 1 1.2020 -4.5081 -0.0857 40 1 2.8784 -5.1016 0.0141 41 1 4.6051 -5.0982 4.2149 42 1 4.5621 -6.8030 3.5127 43 1 5.8506 -6.1697 0.2194 44 1 7.1876 -6.2421 1.3921 45 1 5.7762 -7.3094 1.5847 46 1 5.2324 -3.0770 0.5321 47 1 6.4345 -0.9393 0.7514 48 1 8.0450 -0.6150 2.5857 49 1 8.4468 -2.4254 4.2057 50 1 7.2377 -4.5597 3.9918 51 1 2.1781 -1.5490 2.1396 52 1 0.7445 -2.1940 1.2994 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001027497197.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:27:31 Heat of formation + Delta-G solvation = 24.830874 kcal Electronic energy + Delta-G solvation = -31626.035272 eV Core-core repulsion = 27784.147202 eV Total energy + Delta-G solvation = -3841.888070 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.76433 -40.21604 -38.99615 -37.60604 -36.74454 -33.93483 -32.88066 -31.79127 -31.68190 -30.65892 -29.40534 -28.06894 -26.84823 -25.53839 -24.24847 -24.04362 -23.15834 -23.04089 -21.01558 -20.56791 -19.53606 -18.82928 -18.47241 -17.63055 -17.08847 -16.66501 -16.29292 -15.91741 -15.80549 -15.67437 -15.52650 -15.24289 -14.95483 -14.81209 -14.51506 -14.28808 -14.14247 -13.95253 -13.77401 -13.70662 -13.57311 -13.52275 -13.04184 -13.02359 -12.79209 -12.69321 -12.53786 -12.34017 -12.17088 -12.06625 -11.96762 -11.89663 -11.79925 -11.70718 -11.41173 -11.26603 -10.92752 -10.70438 -10.59459 -9.81107 -9.67535 -9.57831 -8.78819 -7.89768 -5.33108 0.44787 0.50116 1.39513 1.42570 1.51893 1.52938 1.98661 2.48137 2.80842 2.88813 3.21694 3.44366 3.58120 3.68046 3.80650 3.86419 3.97002 4.06427 4.09593 4.11781 4.13636 4.22900 4.24958 4.27657 4.35140 4.54908 4.62912 4.69522 4.70739 4.72932 4.78529 4.87548 4.87979 4.89272 4.97262 5.00643 5.02278 5.10148 5.13337 5.16705 5.19567 5.21013 5.39760 5.41972 5.47179 5.53749 5.57958 5.61916 5.62557 5.63691 5.66396 6.12125 6.28088 6.52962 7.09239 7.27480 7.82341 8.25902 9.12924 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012069 B = 0.003886 C = 0.003247 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2319.477432 B = 7204.176177 C = 8621.144600 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.174 3.826 2 N -0.606 5.606 3 C -0.269 4.269 4 H 0.056 0.944 5 C -0.040 4.040 6 N -0.924 5.924 7 Si 0.955 3.045 8 H -0.281 1.281 9 H -0.288 1.288 10 H -0.279 1.279 11 C 0.173 3.827 12 H 0.039 0.961 13 C -0.122 4.122 14 C -0.122 4.122 15 C 0.105 3.895 16 N -0.603 5.603 17 C 0.536 3.464 18 O -0.585 6.585 19 C -0.186 4.186 20 H 0.161 0.839 21 C -0.126 4.126 22 C -0.055 4.055 23 C -0.106 4.106 24 C -0.053 4.053 25 C -0.117 4.117 26 C -0.138 4.138 27 C -0.135 4.135 28 C -0.125 4.125 29 C -0.116 4.116 30 C 0.117 3.883 31 H 0.010 0.990 32 H 0.036 0.964 33 H 0.009 0.991 34 H 0.250 0.750 35 H 0.058 0.942 36 H 0.039 0.961 37 H 0.103 0.897 38 H 0.058 0.942 39 H 0.084 0.916 40 H 0.119 0.881 41 H 0.081 0.919 42 H 0.143 0.857 43 H 0.070 0.930 44 H 0.065 0.935 45 H 0.090 0.910 46 H 0.108 0.892 47 H 0.110 0.890 48 H 0.132 0.868 49 H 0.145 0.855 50 H 0.142 0.858 51 H 0.050 0.950 52 H 0.063 0.937 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.775 -23.428 4.081 26.108 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.029 3.971 2 N -0.329 5.329 3 C -0.399 4.399 4 H 0.074 0.926 5 C -0.237 4.237 6 N -0.570 5.570 7 Si 0.783 3.217 8 H -0.208 1.208 9 H -0.213 1.213 10 H -0.205 1.205 11 C 0.065 3.935 12 H 0.058 0.942 13 C -0.162 4.162 14 C -0.160 4.160 15 C -0.017 4.017 16 N -0.336 5.336 17 C 0.326 3.674 18 O -0.465 6.465 19 C -0.207 4.207 20 H 0.178 0.822 21 C -0.164 4.164 22 C -0.056 4.056 23 C -0.163 4.163 24 C -0.053 4.053 25 C -0.135 4.135 26 C -0.157 4.157 27 C -0.152 4.152 28 C -0.143 4.143 29 C -0.134 4.134 30 C -0.008 4.008 31 H 0.028 0.972 32 H 0.054 0.946 33 H 0.028 0.972 34 H 0.059 0.941 35 H 0.077 0.923 36 H 0.058 0.942 37 H 0.122 0.878 38 H 0.076 0.924 39 H 0.102 0.898 40 H 0.137 0.863 41 H 0.100 0.900 42 H 0.161 0.839 43 H 0.089 0.911 44 H 0.084 0.916 45 H 0.109 0.891 46 H 0.126 0.874 47 H 0.128 0.872 48 H 0.150 0.850 49 H 0.163 0.837 50 H 0.159 0.841 51 H 0.068 0.932 52 H 0.081 0.919 Dipole moment (debyes) X Y Z Total from point charges 10.739 -22.930 4.516 25.720 hybrid contribution -0.268 2.263 -0.010 2.279 sum 10.470 -20.667 4.506 23.602 Atomic orbital electron populations 1.20502 0.82749 0.96093 0.97738 1.44078 1.01992 1.01051 1.85754 1.19314 0.98323 0.86694 1.35570 0.92646 1.25541 0.99365 1.01069 0.97710 1.70239 1.26326 1.27812 1.32599 0.85478 0.77333 0.80598 0.78309 1.20805 1.21347 1.20494 1.20647 0.94495 0.85265 0.93119 0.94246 1.21932 1.00227 0.96363 0.97634 1.21888 0.99794 0.95300 0.99049 1.22086 1.03282 0.93926 0.82377 1.48123 1.48792 1.17577 1.19068 1.20256 0.77493 0.87934 0.81680 1.90674 1.62760 1.59859 1.33234 1.22599 0.95699 0.95501 1.06879 0.82205 1.23304 0.99138 1.02858 0.91054 1.20294 0.88345 0.94729 1.02200 1.21404 1.00222 0.95987 0.98698 1.19191 0.96895 0.94060 0.95137 1.20975 0.99266 0.93752 0.99485 1.21278 0.97601 0.97468 0.99309 1.21363 0.98623 1.00005 0.95257 1.21415 1.00301 0.93313 0.99272 1.21204 0.96292 0.98176 0.97683 1.21813 0.96701 0.83241 0.99051 0.97223 0.94578 0.97245 0.94069 0.92291 0.94217 0.87836 0.92367 0.89802 0.86310 0.90027 0.83927 0.91110 0.91565 0.89129 0.87401 0.87186 0.85047 0.83724 0.84055 0.93170 0.91869 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.17 8.69 8.11 127.77 1.04 9.73 16 2 N -0.61 -31.42 2.81 -702.34 -1.97 -33.39 16 3 C -0.27 -15.57 9.52 84.03 0.80 -14.77 16 4 H 0.06 3.25 7.88 -2.91 -0.02 3.23 16 5 C -0.04 -2.34 4.88 84.86 0.41 -1.92 16 6 N -0.92 -55.51 11.27 21.65 0.24 -55.27 16 7 Si 0.95 46.82 29.61 68.60 2.03 48.85 16 8 H -0.28 -13.44 7.11 99.48 0.71 -12.73 16 9 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 10 H -0.28 -13.58 7.11 99.48 0.71 -12.87 16 11 C 0.17 7.29 2.74 45.07 0.12 7.41 16 12 H 0.04 1.83 7.86 -2.39 -0.02 1.81 16 13 C -0.12 -4.22 5.15 30.62 0.16 -4.07 16 14 C -0.12 -2.83 6.08 30.67 0.19 -2.65 16 15 C 0.10 2.09 6.30 86.36 0.54 2.63 16 16 N -0.60 -17.79 2.97 -818.90 -2.43 -20.23 16 17 C 0.54 16.34 5.31 87.66 0.47 16.81 16 18 O -0.59 -23.70 15.07 -3.04 -0.05 -23.75 16 19 C -0.19 -3.63 4.90 -11.54 -0.06 -3.69 16 20 H 0.16 1.90 6.44 -2.39 -0.02 1.89 16 21 C -0.13 -2.18 9.23 30.60 0.28 -1.90 16 22 C -0.05 -1.00 2.17 -52.93 -0.11 -1.11 16 23 C -0.11 -1.18 9.84 71.98 0.71 -0.47 16 24 C -0.05 -1.33 4.12 -19.87 -0.08 -1.41 16 25 C -0.12 -3.50 8.25 22.27 0.18 -3.32 16 26 C -0.14 -4.35 10.05 22.27 0.22 -4.13 16 27 C -0.13 -3.69 10.05 22.27 0.22 -3.47 16 28 C -0.13 -3.00 10.05 22.27 0.22 -2.77 16 29 C -0.12 -2.73 9.57 22.27 0.21 -2.51 16 30 C 0.12 4.48 5.79 86.36 0.50 4.98 16 31 H 0.01 0.52 7.41 -2.39 -0.02 0.50 16 32 H 0.04 1.53 6.35 -2.39 -0.02 1.51 16 33 H 0.01 0.48 7.49 -2.38 -0.02 0.47 16 34 H 0.25 14.53 8.31 -92.71 -0.77 13.75 16 35 H 0.06 2.01 7.72 -2.38 -0.02 1.99 16 36 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 37 H 0.10 1.79 8.14 -2.39 -0.02 1.77 16 38 H 0.06 1.44 8.01 -2.38 -0.02 1.42 16 39 H 0.08 1.46 8.14 -2.39 -0.02 1.44 16 40 H 0.12 1.52 5.52 -2.39 -0.01 1.50 16 41 H 0.08 1.91 7.69 -2.39 -0.02 1.89 16 42 H 0.14 1.35 8.05 -2.39 -0.02 1.33 16 43 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 44 H 0.07 0.77 8.08 -2.39 -0.02 0.75 16 45 H 0.09 0.55 7.90 -2.38 -0.02 0.53 16 46 H 0.11 3.29 7.54 -2.91 -0.02 3.27 16 47 H 0.11 3.54 8.06 -2.91 -0.02 3.52 16 48 H 0.13 3.09 8.06 -2.91 -0.02 3.07 16 49 H 0.14 2.58 8.06 -2.91 -0.02 2.56 16 50 H 0.14 2.57 8.06 -2.91 -0.02 2.54 16 51 H 0.05 2.31 7.01 -2.38 -0.02 2.29 16 52 H 0.06 2.36 6.49 -2.39 -0.02 2.35 16 Total: -1.00 -76.32 405.69 4.75 -71.58 By element: Atomic # 1 Polarization: 17.93 SS G_CDS: 0.89 Total: 18.82 kcal Atomic # 6 Polarization: -12.65 SS G_CDS: 6.03 Total: -6.61 kcal Atomic # 7 Polarization: -104.72 SS G_CDS: -4.16 Total: -108.88 kcal Atomic # 8 Polarization: -23.70 SS G_CDS: -0.05 Total: -23.75 kcal Atomic # 14 Polarization: 46.82 SS G_CDS: 2.03 Total: 48.85 kcal Total: -76.32 4.75 -71.58 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001027497197.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 96.406 kcal (2) G-P(sol) polarization free energy of solvation -76.321 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 20.085 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.746 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.575 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.831 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds