Wall clock time and date at job start Wed Apr 1 2020 02:42:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 115.56093 * 2 1 4 4 C 1.53072 * 117.49089 * 214.29920 * 2 1 3 5 5 H 1.08999 * 117.51592 * 145.03738 * 4 2 1 6 6 C 1.50702 * 117.51717 * 359.97438 * 4 2 1 7 7 O 1.21289 * 119.99242 * 51.71020 * 6 4 2 8 8 N 1.34765 * 120.00516 * 231.70966 * 6 4 2 9 9 C 1.46498 * 120.00313 * 179.97438 * 8 6 4 10 10 C 1.53004 * 109.47288 * 179.97438 * 9 8 6 11 11 H 1.09004 * 110.88179 * 51.12546 * 10 9 8 12 12 C 1.55155 * 111.00222 * 174.99651 * 10 9 8 13 13 C 1.54329 * 102.93935 * 153.57809 * 12 10 9 14 14 N 1.47019 * 107.27280 * 337.81524 * 13 12 10 15 15 C 1.36940 * 125.65211 * 178.98683 * 14 13 12 16 16 H 1.07998 * 120.00198 * 179.97438 * 15 14 13 17 17 C 1.38810 * 119.99521 * 359.96742 * 15 14 13 18 18 N 1.31625 * 120.00419 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99816 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46810 * 90.00326 * 19 17 15 21 21 H 1.48502 * 109.47268 * 210.00085 * 19 17 15 22 22 H 1.48497 * 109.47578 * 330.00550 * 19 17 15 23 23 C 1.47429 * 108.70423 * 358.93443 * 14 13 12 24 24 C 1.53002 * 117.50030 * 145.69490 * 2 1 3 25 25 H 1.08997 * 117.49704 * 359.97438 * 24 2 1 26 26 C 1.50700 * 117.49546 * 214.97781 * 24 2 1 27 27 C 1.38238 * 119.99883 * 300.29561 * 26 24 2 28 28 C 1.38237 * 119.99474 * 180.26156 * 27 26 24 29 29 C 1.38234 * 120.00249 * 359.50866 * 28 27 26 30 30 C 1.38236 * 120.00003 * 0.27574 * 29 28 27 31 31 C 1.38229 * 119.99898 * 120.08764 * 26 24 2 32 32 H 1.09001 * 109.46716 * 278.81865 * 1 2 3 33 33 H 1.08994 * 109.47173 * 38.81701 * 1 2 3 34 34 H 1.08995 * 109.46912 * 158.82254 * 1 2 3 35 35 H 1.09000 * 109.47414 * 205.69476 * 3 2 1 36 36 H 1.09000 * 109.47134 * 325.69244 * 3 2 1 37 37 H 1.09004 * 109.47018 * 85.68888 * 3 2 1 38 38 H 0.97000 * 119.99920 * 359.97438 * 8 6 4 39 39 H 1.08998 * 109.47631 * 300.00189 * 9 8 6 40 40 H 1.08998 * 109.46882 * 60.00126 * 9 8 6 41 41 H 1.08992 * 110.72685 * 271.94586 * 12 10 9 42 42 H 1.08999 * 110.72069 * 35.22436 * 12 10 9 43 43 H 1.09003 * 109.88191 * 97.22887 * 13 12 10 44 44 H 1.08995 * 109.88729 * 218.23723 * 13 12 10 45 45 H 0.96995 * 120.00266 * 179.97438 * 18 17 15 46 46 H 1.08999 * 110.36686 * 265.29479 * 23 14 13 47 47 H 1.08992 * 110.36758 * 142.96738 * 23 14 13 48 48 H 1.08001 * 120.00117 * 0.04265 * 27 26 24 49 49 H 1.08000 * 119.99728 * 179.78526 * 28 27 26 50 50 H 1.08004 * 119.99960 * 180.25831 * 29 28 27 51 51 H 1.08001 * 120.00068 * 179.97438 * 30 29 28 52 52 H 1.08000 * 120.00049 * 359.97438 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2367 -1.1218 -0.7652 5 1 3.1719 -0.8765 -1.2685 6 6 1.3725 -2.1420 -1.4604 7 8 0.4912 -1.7797 -2.2109 8 7 1.5788 -3.4568 -1.2483 9 6 0.7383 -4.4485 -1.9237 10 6 1.1790 -5.8550 -1.5132 11 1 1.2358 -5.9432 -0.4282 12 6 0.2330 -6.9304 -2.1097 13 6 1.1398 -8.1758 -2.2016 14 7 2.5314 -7.7019 -2.2217 15 6 3.6447 -8.4973 -2.2776 16 1 4.6278 -8.0503 -2.2884 17 6 3.5096 -9.8782 -2.3202 18 7 2.3115 -10.4230 -2.3074 19 14 5.0282 -10.9632 -2.3972 20 1 5.4679 -11.2976 -1.0187 21 1 4.7066 -12.2135 -3.1311 22 1 6.1173 -10.2413 -3.1027 23 6 2.5298 -6.2284 -2.1730 24 6 2.2366 -1.1211 0.7649 25 1 1.6114 -1.8583 1.2684 26 6 3.5294 -0.7812 1.4607 27 6 4.6032 -0.3068 0.7307 28 6 5.7908 -0.0002 1.3682 29 6 5.9014 -0.1582 2.7371 30 6 4.8261 -0.6283 3.4676 31 6 3.6400 -0.9396 2.8294 32 1 -0.3633 0.1576 1.0155 33 1 -0.3633 0.8007 -0.6441 34 1 -0.3633 -0.9582 -0.3712 35 1 3.1824 1.3085 -0.4456 36 1 1.5812 2.0743 -0.5792 37 1 2.2773 1.7413 1.0248 38 1 2.2838 -3.7465 -0.6484 39 1 -0.3030 -4.2963 -1.6398 40 1 0.8405 -4.3367 -3.0031 41 1 -0.6097 -7.1153 -1.4436 42 1 -0.1143 -6.6326 -3.0990 43 1 0.9789 -8.8164 -1.3344 44 1 0.9204 -8.7276 -3.1156 45 1 2.2171 -11.3879 -2.3375 46 1 2.5871 -5.8155 -3.1801 47 1 3.3606 -5.8681 -1.5665 48 1 4.5155 -0.1792 -0.3382 49 1 6.6309 0.3671 0.7975 50 1 6.8279 0.0853 3.2357 51 1 4.9126 -0.7521 4.5370 52 1 2.7999 -1.3066 3.4002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028540688.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:59 Heat of formation + Delta-G solvation = 28.856255 kcal Electronic energy + Delta-G solvation = -29597.144532 eV Core-core repulsion = 25755.431015 eV Total energy + Delta-G solvation = -3841.713516 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -40.87524 -39.31503 -37.89781 -37.15056 -34.63381 -32.50189 -31.58216 -31.18213 -30.09352 -29.25645 -28.14238 -27.64906 -25.73949 -24.70158 -23.45141 -22.72184 -21.77445 -20.38742 -19.97874 -19.68629 -19.07237 -17.46347 -16.88738 -16.51846 -16.04824 -15.79817 -15.29941 -15.14644 -14.72478 -14.58798 -14.36348 -14.21153 -13.72406 -13.64720 -13.55631 -13.23865 -12.98570 -12.82852 -12.61427 -12.53563 -12.34824 -12.29726 -12.00079 -11.76675 -11.73516 -11.38990 -11.30492 -11.10892 -10.90881 -10.79751 -10.68293 -10.37901 -10.16422 -10.12402 -10.00941 -9.88646 -9.69446 -9.63541 -9.16833 -8.95303 -8.74565 -8.60290 -6.83378 -5.71479 -3.05022 1.03555 1.14436 2.60109 3.03981 3.29250 3.39546 3.44573 3.46626 3.69949 4.16063 4.37886 4.45324 4.49155 4.58881 4.72822 4.76074 4.84980 4.88042 4.99812 5.16456 5.19255 5.22995 5.30382 5.34598 5.42114 5.42883 5.54886 5.62134 5.65412 5.68196 5.70971 5.73617 5.75138 5.78478 5.89533 5.91704 6.03636 6.05990 6.13214 6.22202 6.26397 6.34723 6.35087 6.45390 6.50589 6.53306 6.69120 6.72904 6.91163 7.55726 7.56597 7.62804 7.82574 8.25011 8.25970 9.22038 9.82417 10.48495 11.40299 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.002563 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.306350 B =10919.982895 C =12807.574709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.121 4.121 2 C -0.076 4.076 3 C -0.117 4.117 4 C -0.171 4.171 5 H 0.134 0.866 6 C 0.543 3.457 7 O -0.537 6.537 8 N -0.720 5.720 9 C 0.132 3.868 10 C -0.117 4.117 11 H 0.079 0.921 12 C -0.135 4.135 13 C 0.177 3.823 14 N -0.606 5.606 15 C -0.229 4.229 16 H 0.077 0.923 17 C -0.009 4.009 18 N -0.922 5.922 19 Si 0.912 3.088 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.143 3.857 24 C -0.099 4.099 25 H 0.118 0.882 26 C -0.046 4.046 27 C -0.118 4.118 28 C -0.116 4.116 29 C -0.125 4.125 30 C -0.117 4.117 31 C -0.111 4.111 32 H 0.058 0.942 33 H 0.065 0.935 34 H 0.069 0.931 35 H 0.061 0.939 36 H 0.063 0.937 37 H 0.063 0.937 38 H 0.403 0.597 39 H 0.065 0.935 40 H 0.068 0.932 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.046 0.954 44 H 0.043 0.957 45 H 0.252 0.748 46 H 0.019 0.981 47 H 0.035 0.965 48 H 0.123 0.877 49 H 0.121 0.879 50 H 0.120 0.880 51 H 0.122 0.878 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.596 24.177 10.103 26.210 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.178 4.178 2 C -0.077 4.077 3 C -0.174 4.174 4 C -0.192 4.192 5 H 0.151 0.849 6 C 0.328 3.672 7 O -0.414 6.414 8 N -0.370 5.370 9 C 0.008 3.992 10 C -0.137 4.137 11 H 0.097 0.903 12 C -0.174 4.174 13 C 0.053 3.947 14 N -0.333 5.333 15 C -0.357 4.357 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.570 5.570 19 Si 0.742 3.258 20 H -0.216 1.216 21 H -0.217 1.217 22 H -0.207 1.207 23 C 0.016 3.984 24 C -0.117 4.117 25 H 0.136 0.864 26 C -0.046 4.046 27 C -0.136 4.136 28 C -0.135 4.135 29 C -0.143 4.143 30 C -0.135 4.135 31 C -0.129 4.129 32 H 0.077 0.923 33 H 0.084 0.916 34 H 0.088 0.912 35 H 0.080 0.920 36 H 0.082 0.918 37 H 0.082 0.918 38 H 0.237 0.763 39 H 0.083 0.917 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.064 0.936 44 H 0.061 0.939 45 H 0.062 0.938 46 H 0.036 0.964 47 H 0.054 0.946 48 H 0.140 0.860 49 H 0.139 0.861 50 H 0.138 0.862 51 H 0.140 0.860 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -0.002 24.172 9.525 25.981 hybrid contribution 1.286 -0.966 0.219 1.623 sum 1.285 23.207 9.744 25.202 Atomic orbital electron populations 1.21463 0.91064 1.03756 1.01497 1.21630 0.95363 0.90820 0.99873 1.21423 1.00215 0.93510 1.02213 1.22734 1.02123 1.00357 0.93974 0.84885 1.19539 0.83613 0.82630 0.81399 1.90699 1.33053 1.80459 1.37232 1.46120 1.37109 1.05601 1.48213 1.21419 0.93913 0.86549 0.97297 1.22609 0.98355 0.92177 1.00542 0.90273 1.22858 0.97869 0.97043 0.99617 1.21139 0.81850 0.90684 1.01062 1.44479 1.02578 0.99168 1.87030 1.19056 0.85280 0.87700 1.43657 0.90501 1.24805 0.96840 0.96571 1.02277 1.69965 1.20005 1.09934 1.57071 0.86122 0.81905 0.80208 0.77549 1.21610 1.21662 1.20704 1.21573 0.93685 0.86609 0.96508 1.21393 0.96585 1.02270 0.91482 0.86372 1.19030 0.93403 0.98755 0.93428 1.21081 0.92928 0.99638 0.99917 1.21130 0.97501 1.00034 0.94787 1.21160 0.98775 1.00036 0.94335 1.21138 0.93240 0.99207 0.99938 1.20957 0.97953 1.00284 0.93725 0.92277 0.91599 0.91230 0.91975 0.91763 0.91779 0.76260 0.91695 0.91326 0.92000 0.92204 0.93597 0.93907 0.93760 0.96352 0.94645 0.85968 0.86064 0.86206 0.86047 0.85991 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -1.18 9.29 37.16 0.35 -0.83 16 2 C -0.08 -0.70 2.70 -154.47 -0.42 -1.12 16 3 C -0.12 -0.90 8.61 37.16 0.32 -0.58 16 4 C -0.17 -1.73 5.11 -91.73 -0.47 -2.20 16 5 H 0.13 1.22 6.09 -51.93 -0.32 0.91 16 6 C 0.54 7.12 6.36 -10.99 -0.07 7.05 16 7 O -0.54 -8.85 15.39 5.55 0.09 -8.77 16 8 N -0.72 -9.10 5.50 -60.29 -0.33 -9.43 16 9 C 0.13 1.89 5.13 -4.04 -0.02 1.87 16 10 C -0.12 -1.93 3.05 -88.47 -0.27 -2.20 16 11 H 0.08 1.28 8.14 -51.93 -0.42 0.86 16 12 C -0.13 -2.46 6.42 -24.89 -0.16 -2.62 16 13 C 0.18 4.29 5.37 -3.06 -0.02 4.27 16 14 N -0.61 -15.44 3.39 -170.08 -0.58 -16.02 16 15 C -0.23 -6.39 10.28 -15.06 -0.15 -6.54 16 16 H 0.08 2.07 7.83 -52.49 -0.41 1.66 16 17 C -0.01 -0.25 5.49 -17.43 -0.10 -0.34 16 18 N -0.92 -27.18 10.31 55.49 0.57 -26.61 16 19 Si 0.91 22.15 29.55 -169.99 -5.02 17.12 16 20 H -0.29 -6.97 7.11 56.52 0.40 -6.57 16 21 H -0.29 -7.12 7.11 56.52 0.40 -6.71 16 22 H -0.28 -6.66 7.11 56.52 0.40 -6.26 16 23 C 0.14 2.87 6.65 -2.53 -0.02 2.85 16 24 C -0.10 -0.88 5.46 -91.77 -0.50 -1.38 16 25 H 0.12 1.05 8.14 -51.93 -0.42 0.63 16 26 C -0.05 -0.41 5.05 -104.63 -0.53 -0.94 16 27 C -0.12 -1.00 7.77 -39.58 -0.31 -1.31 16 28 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 29 C -0.13 -0.97 10.05 -39.58 -0.40 -1.37 16 30 C -0.12 -0.93 10.05 -39.58 -0.40 -1.33 16 31 C -0.11 -0.94 9.74 -39.58 -0.39 -1.33 16 32 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 33 H 0.07 0.63 8.00 -51.93 -0.42 0.21 16 34 H 0.07 0.83 5.66 -51.93 -0.29 0.53 16 35 H 0.06 0.45 5.89 -51.93 -0.31 0.15 16 36 H 0.06 0.47 7.98 -51.93 -0.41 0.05 16 37 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 38 H 0.40 4.57 8.47 -40.82 -0.35 4.22 16 39 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 40 H 0.07 1.07 7.96 -51.93 -0.41 0.66 16 41 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 42 H 0.06 1.03 8.04 -51.93 -0.42 0.62 16 43 H 0.05 1.22 7.38 -51.93 -0.38 0.84 16 44 H 0.04 1.15 7.50 -51.93 -0.39 0.76 16 45 H 0.25 7.22 8.31 -40.82 -0.34 6.88 16 46 H 0.02 0.38 7.91 -51.93 -0.41 -0.03 16 47 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 48 H 0.12 0.93 5.15 -52.49 -0.27 0.66 16 49 H 0.12 0.76 8.06 -52.49 -0.42 0.33 16 50 H 0.12 0.71 8.06 -52.48 -0.42 0.28 16 51 H 0.12 0.74 8.06 -52.49 -0.42 0.31 16 52 H 0.12 0.88 8.06 -52.49 -0.42 0.45 16 LS Contribution 409.48 15.07 6.17 6.17 Total: -1.00 -32.39 409.48 -11.62 -44.01 By element: Atomic # 1 Polarization: 11.47 SS G_CDS: -8.57 Total: 2.90 kcal Atomic # 6 Polarization: -5.44 SS G_CDS: -3.94 Total: -9.38 kcal Atomic # 7 Polarization: -51.72 SS G_CDS: -0.34 Total: -52.05 kcal Atomic # 8 Polarization: -8.85 SS G_CDS: 0.09 Total: -8.77 kcal Atomic # 14 Polarization: 22.15 SS G_CDS: -5.02 Total: 17.12 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.39 -11.62 -44.01 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028540688.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 72.867 kcal (2) G-P(sol) polarization free energy of solvation -32.393 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 40.474 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.618 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.011 kcal (6) G-S(sol) free energy of system = (1) + (5) 28.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds