Wall clock time and date at job start Wed Apr 1 2020 02:42:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53008 * 1 3 3 C 1.52998 * 115.56093 * 2 1 4 4 C 1.53072 * 117.49089 * 214.29920 * 2 1 3 5 5 H 1.08999 * 117.51592 * 145.03738 * 4 2 1 6 6 C 1.50702 * 117.51717 * 359.97438 * 4 2 1 7 7 O 1.21289 * 119.99242 * 51.71020 * 6 4 2 8 8 N 1.34765 * 120.00516 * 231.70966 * 6 4 2 9 9 C 1.46498 * 120.00313 * 179.97438 * 8 6 4 10 10 C 1.53004 * 109.47288 * 179.97438 * 9 8 6 11 11 H 1.09004 * 110.88179 * 51.12546 * 10 9 8 12 12 C 1.55155 * 111.00222 * 174.99651 * 10 9 8 13 13 C 1.54329 * 102.93935 * 153.57809 * 12 10 9 14 14 N 1.47019 * 107.27280 * 337.81524 * 13 12 10 15 15 C 1.36940 * 125.65211 * 178.98683 * 14 13 12 16 16 H 1.07998 * 120.00198 * 179.97438 * 15 14 13 17 17 C 1.38810 * 119.99521 * 359.96742 * 15 14 13 18 18 N 1.31625 * 120.00419 * 0.02562 * 17 15 14 19 19 Si 1.86797 * 119.99816 * 179.97438 * 17 15 14 20 20 H 1.48503 * 109.46810 * 90.00326 * 19 17 15 21 21 H 1.48502 * 109.47268 * 210.00085 * 19 17 15 22 22 H 1.48497 * 109.47578 * 330.00550 * 19 17 15 23 23 C 1.47429 * 108.70423 * 358.93443 * 14 13 12 24 24 C 1.53002 * 117.50030 * 145.69490 * 2 1 3 25 25 H 1.08997 * 117.49704 * 359.97438 * 24 2 1 26 26 C 1.50700 * 117.49546 * 214.97781 * 24 2 1 27 27 C 1.38238 * 119.99883 * 300.29561 * 26 24 2 28 28 C 1.38237 * 119.99474 * 180.26156 * 27 26 24 29 29 C 1.38234 * 120.00249 * 359.50866 * 28 27 26 30 30 C 1.38236 * 120.00003 * 0.27574 * 29 28 27 31 31 C 1.38229 * 119.99898 * 120.08764 * 26 24 2 32 32 H 1.09001 * 109.46716 * 278.81865 * 1 2 3 33 33 H 1.08994 * 109.47173 * 38.81701 * 1 2 3 34 34 H 1.08995 * 109.46912 * 158.82254 * 1 2 3 35 35 H 1.09000 * 109.47414 * 205.69476 * 3 2 1 36 36 H 1.09000 * 109.47134 * 325.69244 * 3 2 1 37 37 H 1.09004 * 109.47018 * 85.68888 * 3 2 1 38 38 H 0.97000 * 119.99920 * 359.97438 * 8 6 4 39 39 H 1.08998 * 109.47631 * 300.00189 * 9 8 6 40 40 H 1.08998 * 109.46882 * 60.00126 * 9 8 6 41 41 H 1.08992 * 110.72685 * 271.94586 * 12 10 9 42 42 H 1.08999 * 110.72069 * 35.22436 * 12 10 9 43 43 H 1.09003 * 109.88191 * 97.22887 * 13 12 10 44 44 H 1.08995 * 109.88729 * 218.23723 * 13 12 10 45 45 H 0.96995 * 120.00266 * 179.97438 * 18 17 15 46 46 H 1.08999 * 110.36686 * 265.29479 * 23 14 13 47 47 H 1.08992 * 110.36758 * 142.96738 * 23 14 13 48 48 H 1.08001 * 120.00117 * 0.04265 * 27 26 24 49 49 H 1.08000 * 119.99728 * 179.78526 * 28 27 26 50 50 H 1.08004 * 119.99960 * 180.25831 * 29 28 27 51 51 H 1.08001 * 120.00068 * 179.97438 * 30 29 28 52 52 H 1.08000 * 120.00049 * 359.97438 * 31 26 24 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5301 0.0000 0.0000 3 6 2.1902 1.3802 0.0000 4 6 2.2367 -1.1218 -0.7652 5 1 3.1719 -0.8765 -1.2685 6 6 1.3725 -2.1420 -1.4604 7 8 0.4912 -1.7797 -2.2109 8 7 1.5788 -3.4568 -1.2483 9 6 0.7383 -4.4485 -1.9237 10 6 1.1790 -5.8550 -1.5132 11 1 1.2358 -5.9432 -0.4282 12 6 0.2330 -6.9304 -2.1097 13 6 1.1398 -8.1758 -2.2016 14 7 2.5314 -7.7019 -2.2217 15 6 3.6447 -8.4973 -2.2776 16 1 4.6278 -8.0503 -2.2884 17 6 3.5096 -9.8782 -2.3202 18 7 2.3115 -10.4230 -2.3074 19 14 5.0282 -10.9632 -2.3972 20 1 5.4679 -11.2976 -1.0187 21 1 4.7066 -12.2135 -3.1311 22 1 6.1173 -10.2413 -3.1027 23 6 2.5298 -6.2284 -2.1730 24 6 2.2366 -1.1211 0.7649 25 1 1.6114 -1.8583 1.2684 26 6 3.5294 -0.7812 1.4607 27 6 4.6032 -0.3068 0.7307 28 6 5.7908 -0.0002 1.3682 29 6 5.9014 -0.1582 2.7371 30 6 4.8261 -0.6283 3.4676 31 6 3.6400 -0.9396 2.8294 32 1 -0.3633 0.1576 1.0155 33 1 -0.3633 0.8007 -0.6441 34 1 -0.3633 -0.9582 -0.3712 35 1 3.1824 1.3085 -0.4456 36 1 1.5812 2.0743 -0.5792 37 1 2.2773 1.7413 1.0248 38 1 2.2838 -3.7465 -0.6484 39 1 -0.3030 -4.2963 -1.6398 40 1 0.8405 -4.3367 -3.0031 41 1 -0.6097 -7.1153 -1.4436 42 1 -0.1143 -6.6326 -3.0990 43 1 0.9789 -8.8164 -1.3344 44 1 0.9204 -8.7276 -3.1156 45 1 2.2171 -11.3879 -2.3375 46 1 2.5871 -5.8155 -3.1801 47 1 3.3606 -5.8681 -1.5665 48 1 4.5155 -0.1792 -0.3382 49 1 6.6309 0.3671 0.7975 50 1 6.8279 0.0853 3.2357 51 1 4.9126 -0.7521 4.5370 52 1 2.7999 -1.3066 3.4002 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028540688.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:42:57 Heat of formation + Delta-G solvation = 11.718161 kcal Electronic energy + Delta-G solvation = -29597.887695 eV Core-core repulsion = 25755.431015 eV Total energy + Delta-G solvation = -3842.456680 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.37 seconds Orbital eigenvalues (eV) -41.69841 -40.19310 -39.30411 -38.09301 -36.01915 -34.30392 -32.20850 -31.76533 -31.72174 -30.42563 -29.51446 -28.33618 -27.34588 -25.92316 -24.72784 -23.34773 -22.63435 -21.95518 -21.46779 -20.71233 -19.92815 -18.85965 -18.18038 -17.42737 -17.30385 -16.68570 -16.61990 -16.20523 -16.02422 -15.69299 -15.45526 -15.10378 -15.03222 -14.73731 -14.24930 -14.20668 -14.04275 -13.93938 -13.79192 -13.52044 -13.47158 -13.32709 -13.21908 -13.01814 -12.95126 -12.78836 -12.63294 -12.41286 -12.03328 -11.93270 -11.87452 -11.84743 -11.73401 -11.56429 -11.47827 -11.35601 -10.91701 -10.73516 -10.70653 -10.06304 -9.75297 -9.38710 -8.90381 -7.85563 -5.21198 0.43164 0.55909 1.45339 1.47272 1.55924 1.58751 2.11116 2.49072 2.52864 3.04780 3.32631 3.41558 3.60434 3.65283 3.71561 3.79340 3.96727 4.00455 4.02728 4.07144 4.15310 4.19888 4.31632 4.35938 4.43956 4.59441 4.61600 4.65927 4.70471 4.74229 4.78963 4.80982 4.90639 4.95812 4.99457 5.02360 5.05012 5.06194 5.07092 5.15894 5.21326 5.25669 5.34183 5.41155 5.44958 5.49088 5.64018 5.67201 5.69316 5.74244 5.77599 6.16213 6.19709 6.54648 7.10057 7.22814 7.77635 8.41986 9.24954 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.010951 B = 0.002563 C = 0.002186 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2556.306350 B =10919.982895 C =12807.574709 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.119 4.119 2 C -0.075 4.075 3 C -0.113 4.113 4 C -0.178 4.178 5 H 0.144 0.856 6 C 0.544 3.456 7 O -0.573 6.573 8 N -0.714 5.714 9 C 0.144 3.856 10 C -0.094 4.094 11 H 0.089 0.911 12 C -0.123 4.123 13 C 0.183 3.817 14 N -0.629 5.629 15 C -0.243 4.243 16 H 0.082 0.918 17 C -0.068 4.068 18 N -0.952 5.952 19 Si 0.978 3.022 20 H -0.284 1.284 21 H -0.295 1.295 22 H -0.269 1.269 23 C 0.139 3.861 24 C -0.085 4.085 25 H 0.119 0.881 26 C -0.056 4.056 27 C -0.126 4.126 28 C -0.126 4.126 29 C -0.132 4.132 30 C -0.126 4.126 31 C -0.122 4.122 32 H 0.073 0.927 33 H 0.064 0.936 34 H 0.047 0.953 35 H 0.066 0.934 36 H 0.067 0.933 37 H 0.068 0.932 38 H 0.411 0.589 39 H 0.075 0.925 40 H 0.058 0.942 41 H 0.086 0.914 42 H 0.070 0.930 43 H 0.013 0.987 44 H 0.004 0.996 45 H 0.246 0.754 46 H 0.017 0.983 47 H 0.046 0.954 48 H 0.128 0.872 49 H 0.136 0.864 50 H 0.137 0.863 51 H 0.137 0.863 52 H 0.131 0.869 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.658 26.047 11.316 28.447 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.176 4.176 2 C -0.076 4.076 3 C -0.170 4.170 4 C -0.198 4.198 5 H 0.162 0.838 6 C 0.332 3.668 7 O -0.452 6.452 8 N -0.365 5.365 9 C 0.020 3.980 10 C -0.114 4.114 11 H 0.107 0.893 12 C -0.161 4.161 13 C 0.058 3.942 14 N -0.355 5.355 15 C -0.372 4.372 16 H 0.100 0.900 17 C -0.261 4.261 18 N -0.601 5.601 19 Si 0.807 3.193 20 H -0.211 1.211 21 H -0.222 1.222 22 H -0.194 1.194 23 C 0.014 3.986 24 C -0.103 4.103 25 H 0.137 0.863 26 C -0.056 4.056 27 C -0.144 4.144 28 C -0.144 4.144 29 C -0.150 4.150 30 C -0.144 4.144 31 C -0.140 4.140 32 H 0.091 0.909 33 H 0.083 0.917 34 H 0.066 0.934 35 H 0.085 0.915 36 H 0.086 0.914 37 H 0.087 0.913 38 H 0.247 0.753 39 H 0.093 0.907 40 H 0.076 0.924 41 H 0.104 0.896 42 H 0.089 0.911 43 H 0.031 0.969 44 H 0.022 0.978 45 H 0.056 0.944 46 H 0.035 0.965 47 H 0.064 0.936 48 H 0.146 0.854 49 H 0.154 0.846 50 H 0.155 0.845 51 H 0.155 0.845 52 H 0.149 0.851 Dipole moment (debyes) X Y Z Total from point charges 1.083 26.079 10.754 28.230 hybrid contribution 0.979 -1.511 -0.154 1.807 sum 2.062 24.569 10.600 26.837 Atomic orbital electron populations 1.21432 0.91584 1.02421 1.02204 1.21721 0.95049 0.91483 0.99327 1.21414 1.00388 0.92612 1.02616 1.22695 1.02180 1.00203 0.94755 0.83842 1.19965 0.83232 0.82868 0.80775 1.90683 1.34700 1.80960 1.38889 1.46039 1.37029 1.05390 1.48051 1.21161 0.94608 0.85441 0.96776 1.22404 0.95479 0.92886 1.00604 0.89281 1.22723 0.97617 0.94595 1.01197 1.20912 0.82898 0.92752 0.97630 1.44809 1.02440 1.01417 1.86858 1.19470 0.86457 0.88456 1.42807 0.89970 1.25667 0.99700 0.98015 1.02671 1.70192 1.21990 1.09629 1.58306 0.85079 0.78746 0.77984 0.77534 1.21078 1.22190 1.19391 1.21745 0.96222 0.83738 0.96930 1.21345 0.96668 1.01906 0.90392 0.86332 1.19063 0.93363 0.99488 0.93704 1.21221 0.93115 0.99739 1.00316 1.21392 0.97865 0.99913 0.95197 1.21457 0.99495 0.99572 0.94478 1.21407 0.93098 0.98925 1.00926 1.21160 0.98619 1.00436 0.93800 0.90864 0.91684 0.93438 0.91464 0.91401 0.91346 0.75297 0.90719 0.92371 0.89553 0.91096 0.96920 0.97817 0.94432 0.96514 0.93588 0.85406 0.84606 0.84529 0.84475 0.85124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -2.19 9.29 71.98 0.67 -1.52 16 2 C -0.08 -1.26 2.70 -52.15 -0.14 -1.40 16 3 C -0.11 -1.54 8.61 71.98 0.62 -0.92 16 4 C -0.18 -3.33 5.11 -11.51 -0.06 -3.39 16 5 H 0.14 2.39 6.09 -2.39 -0.01 2.37 16 6 C 0.54 13.61 6.36 87.66 0.56 14.16 16 7 O -0.57 -18.47 15.39 -3.06 -0.05 -18.52 16 8 N -0.71 -16.83 5.50 -463.07 -2.55 -19.38 16 9 C 0.14 3.87 5.13 86.38 0.44 4.31 16 10 C -0.09 -2.94 3.05 -9.40 -0.03 -2.97 16 11 H 0.09 2.67 8.14 -2.39 -0.02 2.65 16 12 C -0.12 -4.34 6.42 31.78 0.20 -4.13 16 13 C 0.18 9.07 5.37 86.73 0.47 9.54 16 14 N -0.63 -32.33 3.39 -692.00 -2.35 -34.68 16 15 C -0.24 -13.69 10.28 84.03 0.86 -12.83 16 16 H 0.08 4.41 7.83 -2.91 -0.02 4.39 16 17 C -0.07 -3.89 5.49 84.86 0.47 -3.42 16 18 N -0.95 -57.88 10.31 21.65 0.22 -57.65 16 19 Si 0.98 45.98 29.55 68.60 2.03 48.00 16 20 H -0.28 -13.02 7.11 99.48 0.71 -12.32 16 21 H -0.30 -14.00 7.11 99.48 0.71 -13.29 16 22 H -0.27 -11.97 7.11 99.48 0.71 -11.26 16 23 C 0.14 5.46 6.65 86.85 0.58 6.04 16 24 C -0.08 -1.37 5.46 -11.54 -0.06 -1.43 16 25 H 0.12 1.89 8.14 -2.39 -0.02 1.87 16 26 C -0.06 -0.89 5.05 -19.87 -0.10 -0.99 16 27 C -0.13 -1.90 7.77 22.27 0.17 -1.72 16 28 C -0.13 -1.75 10.05 22.27 0.22 -1.53 16 29 C -0.13 -1.77 10.05 22.27 0.22 -1.55 16 30 C -0.13 -1.73 10.05 22.27 0.22 -1.51 16 31 C -0.12 -1.84 9.74 22.27 0.22 -1.62 16 32 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 33 H 0.06 1.18 8.00 -2.39 -0.02 1.16 16 34 H 0.05 1.09 5.66 -2.39 -0.01 1.08 16 35 H 0.07 0.85 5.89 -2.39 -0.01 0.83 16 36 H 0.07 0.87 7.98 -2.39 -0.02 0.85 16 37 H 0.07 0.88 8.14 -2.38 -0.02 0.86 16 38 H 0.41 8.46 8.47 -92.71 -0.79 7.68 16 39 H 0.07 1.93 8.14 -2.39 -0.02 1.91 16 40 H 0.06 1.72 7.96 -2.39 -0.02 1.71 16 41 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 42 H 0.07 2.37 8.04 -2.39 -0.02 2.35 16 43 H 0.01 0.70 7.38 -2.39 -0.02 0.68 16 44 H 0.00 0.20 7.50 -2.39 -0.02 0.18 16 45 H 0.25 14.57 8.31 -92.71 -0.77 13.80 16 46 H 0.02 0.68 7.91 -2.39 -0.02 0.66 16 47 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 48 H 0.13 1.69 5.15 -2.91 -0.01 1.67 16 49 H 0.14 1.40 8.06 -2.91 -0.02 1.37 16 50 H 0.14 1.28 8.06 -2.91 -0.02 1.26 16 51 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 52 H 0.13 1.64 8.06 -2.91 -0.02 1.61 16 Total: -1.00 -71.26 409.48 2.97 -68.30 By element: Atomic # 1 Polarization: 20.70 SS G_CDS: 0.12 Total: 20.82 kcal Atomic # 6 Polarization: -12.43 SS G_CDS: 5.54 Total: -6.89 kcal Atomic # 7 Polarization: -107.04 SS G_CDS: -4.67 Total: -111.71 kcal Atomic # 8 Polarization: -18.47 SS G_CDS: -0.05 Total: -18.52 kcal Atomic # 14 Polarization: 45.98 SS G_CDS: 2.03 Total: 48.00 kcal Total: -71.26 2.97 -68.30 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028540688.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 80.014 kcal (2) G-P(sol) polarization free energy of solvation -71.263 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.752 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.966 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.296 kcal (6) G-S(sol) free energy of system = (1) + (5) 11.718 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.37 seconds