Wall clock time and date at job start Wed Apr 1 2020 02:43:03 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 115.56112 * 2 1 4 4 C 1.52996 * 117.50016 * 145.68723 * 2 1 3 5 5 H 1.09006 * 117.51740 * 0.02562 * 4 2 1 6 6 C 1.50701 * 117.50131 * 214.98165 * 4 2 1 7 7 O 1.21283 * 120.00064 * 310.82109 * 6 4 2 8 8 N 1.34780 * 120.00074 * 130.81754 * 6 4 2 9 9 C 1.46495 * 119.99902 * 180.02562 * 8 6 4 10 10 C 1.53004 * 109.47012 * 179.97438 * 9 8 6 11 11 H 1.09002 * 110.88737 * 305.69976 * 10 9 8 12 12 C 1.55165 * 111.00239 * 181.82093 * 10 9 8 13 13 C 1.54376 * 102.91583 * 206.45235 * 12 10 9 14 14 N 1.47023 * 107.29001 * 22.13943 * 13 12 10 15 15 C 1.36936 * 125.64922 * 181.05326 * 14 13 12 16 16 H 1.07998 * 120.00430 * 180.98492 * 15 14 13 17 17 C 1.38820 * 119.99750 * 0.99112 * 15 14 13 18 18 N 1.31618 * 120.00029 * 351.42807 * 17 15 14 19 19 Si 1.86800 * 119.99808 * 171.42393 * 17 15 14 20 20 H 1.48509 * 109.46654 * 94.79638 * 19 17 15 21 21 H 1.48495 * 109.47173 * 214.79478 * 19 17 15 22 22 H 1.48497 * 109.47350 * 334.79752 * 19 17 15 23 23 C 1.47423 * 108.70258 * 1.08924 * 14 13 12 24 24 C 1.52991 * 60.00109 * 107.49127 * 4 2 1 25 25 H 1.09004 * 117.50005 * 107.51312 * 24 4 2 26 26 C 1.50699 * 117.49935 * 252.51253 * 24 4 2 27 27 C 1.38230 * 120.00014 * 8.33315 * 26 24 4 28 28 C 1.38242 * 119.99828 * 179.74616 * 27 26 24 29 29 C 1.38232 * 120.00031 * 0.54928 * 28 27 26 30 30 C 1.38240 * 120.00002 * 359.70665 * 29 28 27 31 31 C 1.38233 * 119.99842 * 0.02562 * 30 29 28 32 32 H 1.09001 * 109.47172 * 325.70549 * 1 2 3 33 33 H 1.09000 * 109.46717 * 85.70030 * 1 2 3 34 34 H 1.08999 * 109.47134 * 205.70359 * 1 2 3 35 35 H 1.09006 * 109.47141 * 198.88390 * 3 2 1 36 36 H 1.09000 * 109.47013 * 318.88578 * 3 2 1 37 37 H 1.08997 * 109.47246 * 78.88366 * 3 2 1 38 38 H 0.97000 * 119.99697 * 359.97438 * 8 6 4 39 39 H 1.08996 * 109.47200 * 299.99648 * 9 8 6 40 40 H 1.09007 * 109.47453 * 59.99895 * 9 8 6 41 41 H 1.08996 * 110.72097 * 324.78584 * 12 10 9 42 42 H 1.08999 * 110.71711 * 88.06071 * 12 10 9 43 43 H 1.08996 * 109.84715 * 262.72889 * 13 12 10 44 44 H 1.09003 * 110.02612 * 141.64823 * 13 12 10 45 45 H 0.96997 * 120.00106 * 180.02562 * 18 17 15 46 46 H 1.08996 * 110.36725 * 217.03354 * 23 14 13 47 47 H 1.09006 * 110.46017 * 94.75476 * 23 14 13 48 48 H 1.07997 * 119.99983 * 359.97438 * 27 26 24 49 49 H 1.07998 * 119.99802 * 180.27617 * 28 27 26 50 50 H 1.08000 * 119.99886 * 179.72322 * 29 28 27 51 51 H 1.07999 * 119.99775 * 179.97438 * 30 29 28 52 52 H 1.07998 * 119.99733 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2364 -1.1209 0.7650 5 1 1.6115 -1.8588 1.2681 6 6 3.5293 -0.7810 1.4609 7 8 4.4029 -0.1899 0.8624 8 7 3.7146 -1.1340 2.7484 9 6 4.9711 -0.8031 3.4250 10 6 4.9230 -1.3116 4.8672 11 1 4.0422 -0.9311 5.3843 12 6 6.2209 -0.9393 5.6317 13 6 6.3116 -2.0374 6.7130 14 7 5.5203 -3.1828 6.2400 15 6 5.3290 -4.3559 6.9199 16 1 4.7411 -5.1466 6.4778 17 6 5.8908 -4.5287 8.1775 18 7 6.7423 -3.6410 8.6456 19 14 5.4380 -6.0212 9.2056 20 1 6.4449 -7.0921 8.9937 21 1 5.4116 -5.6437 10.6415 22 1 4.0977 -6.5145 8.7987 23 6 4.9677 -2.8594 4.9120 24 6 2.2365 -1.1210 -0.7649 25 1 3.1717 -0.8755 -1.2682 26 6 1.3721 -2.1406 -1.4607 27 6 0.4896 -2.9132 -0.7292 28 6 -0.3071 -3.8448 -1.3682 29 6 -0.2132 -4.0118 -2.7372 30 6 0.6732 -3.2429 -3.4681 31 6 1.4659 -2.3074 -2.8298 32 1 -0.3633 0.8490 0.5790 33 1 -0.3633 0.0770 -1.0248 34 1 -0.3633 -0.9260 0.4457 35 1 3.2242 1.2885 -0.3326 36 1 1.6485 2.0421 -0.6758 37 1 2.1682 1.7936 1.0083 38 1 3.0157 -1.6064 3.2271 39 1 5.8016 -1.2754 2.9003 40 1 5.1097 0.2782 3.4257 41 1 7.0845 -0.9797 4.9680 42 1 6.1301 0.0462 6.0886 43 1 5.9019 -1.6665 7.6524 44 1 7.3500 -2.3373 6.8543 45 1 7.1351 -3.7619 9.5242 46 1 3.9638 -3.2710 4.8084 47 1 5.6174 -3.2430 4.1252 48 1 0.4199 -2.7863 0.3410 49 1 -0.9998 -4.4453 -0.7973 50 1 -0.8324 -4.7428 -3.2358 51 1 0.7469 -3.3736 -4.5376 52 1 2.1586 -1.7070 -3.4008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001028540689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:03 Heat of formation + Delta-G solvation = 27.256970 kcal Electronic energy + Delta-G solvation = -29344.553361 eV Core-core repulsion = 25502.770494 eV Total energy + Delta-G solvation = -3841.782867 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 4.13 seconds Orbital eigenvalues (eV) -40.87861 -39.30211 -37.93869 -37.07474 -34.60626 -32.50460 -31.60395 -31.18968 -30.04817 -29.27073 -28.23958 -27.63848 -25.83656 -24.64379 -23.39401 -22.72838 -21.70832 -20.35736 -19.96625 -19.67079 -19.11398 -17.62893 -16.83831 -16.44786 -16.08111 -15.48040 -15.41469 -15.06406 -14.76433 -14.58874 -14.34407 -14.25010 -13.79143 -13.65489 -13.54613 -13.33083 -12.97480 -12.76382 -12.63645 -12.50352 -12.35203 -12.32396 -12.02323 -11.77133 -11.72589 -11.40706 -11.28770 -11.15956 -10.90289 -10.80444 -10.63306 -10.38983 -10.17654 -10.13350 -10.03224 -9.87650 -9.68807 -9.63119 -9.17862 -8.92970 -8.77425 -8.59016 -6.84347 -5.73185 -3.05335 1.02548 1.13430 2.41562 3.15541 3.37033 3.38958 3.44382 3.46473 3.83953 4.24613 4.38613 4.47573 4.48779 4.61035 4.72161 4.75207 4.84028 4.89499 4.96796 5.11691 5.21288 5.23169 5.30784 5.32002 5.39060 5.42436 5.53196 5.59259 5.67108 5.68573 5.70766 5.74888 5.75271 5.81729 5.88962 5.91051 6.03967 6.05730 6.16551 6.22708 6.25077 6.33722 6.36789 6.46399 6.49850 6.52327 6.68358 6.72169 6.90467 7.54455 7.57557 7.61666 7.81520 8.24822 8.27335 9.20613 9.81698 10.47881 11.38846 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.002235 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.461534 B =12527.165720 C =14031.845694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.118 4.118 2 C -0.076 4.076 3 C -0.123 4.123 4 C -0.181 4.181 5 H 0.122 0.878 6 C 0.543 3.457 7 O -0.544 6.544 8 N -0.720 5.720 9 C 0.133 3.867 10 C -0.117 4.117 11 H 0.079 0.921 12 C -0.134 4.134 13 C 0.176 3.824 14 N -0.606 5.606 15 C -0.230 4.230 16 H 0.077 0.923 17 C -0.008 4.008 18 N -0.920 5.920 19 Si 0.910 3.090 20 H -0.289 1.289 21 H -0.290 1.290 22 H -0.281 1.281 23 C 0.143 3.857 24 C -0.078 4.078 25 H 0.125 0.875 26 C -0.047 4.047 27 C -0.118 4.118 28 C -0.117 4.117 29 C -0.126 4.126 30 C -0.118 4.118 31 C -0.111 4.111 32 H 0.063 0.937 33 H 0.064 0.936 34 H 0.062 0.938 35 H 0.078 0.922 36 H 0.060 0.940 37 H 0.059 0.941 38 H 0.402 0.598 39 H 0.068 0.932 40 H 0.064 0.936 41 H 0.060 0.940 42 H 0.061 0.939 43 H 0.039 0.961 44 H 0.049 0.951 45 H 0.252 0.748 46 H 0.035 0.965 47 H 0.019 0.981 48 H 0.123 0.877 49 H 0.122 0.878 50 H 0.120 0.880 51 H 0.121 0.879 52 H 0.122 0.878 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.869 7.223 -21.853 27.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.175 4.175 2 C -0.077 4.077 3 C -0.180 4.180 4 C -0.202 4.202 5 H 0.140 0.860 6 C 0.330 3.670 7 O -0.422 6.422 8 N -0.370 5.370 9 C 0.010 3.990 10 C -0.137 4.137 11 H 0.097 0.903 12 C -0.173 4.173 13 C 0.051 3.949 14 N -0.332 5.332 15 C -0.358 4.358 16 H 0.095 0.905 17 C -0.205 4.205 18 N -0.567 5.567 19 Si 0.740 3.260 20 H -0.217 1.217 21 H -0.216 1.216 22 H -0.207 1.207 23 C 0.016 3.984 24 C -0.097 4.097 25 H 0.143 0.857 26 C -0.047 4.047 27 C -0.136 4.136 28 C -0.135 4.135 29 C -0.144 4.144 30 C -0.136 4.136 31 C -0.129 4.129 32 H 0.082 0.918 33 H 0.083 0.917 34 H 0.081 0.919 35 H 0.097 0.903 36 H 0.079 0.921 37 H 0.078 0.922 38 H 0.236 0.764 39 H 0.086 0.914 40 H 0.083 0.917 41 H 0.079 0.921 42 H 0.080 0.920 43 H 0.057 0.943 44 H 0.067 0.933 45 H 0.062 0.938 46 H 0.053 0.947 47 H 0.036 0.964 48 H 0.141 0.859 49 H 0.140 0.860 50 H 0.138 0.862 51 H 0.139 0.861 52 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges -14.150 7.552 -22.035 27.255 hybrid contribution -0.463 -1.239 0.998 1.657 sum -14.613 6.313 -21.037 26.381 Atomic orbital electron populations 1.21440 0.91350 1.02387 1.02358 1.21625 0.94746 0.91063 1.00276 1.21459 1.01585 0.92880 1.02059 1.22676 0.98299 1.04358 0.94889 0.86014 1.19472 0.87340 0.78563 0.81666 1.90658 1.44408 1.41617 1.65490 1.45992 1.19580 1.59430 1.12028 1.21396 0.85495 0.99973 0.92137 1.22610 0.99810 0.98178 0.93111 0.90262 1.22856 0.95580 0.99985 0.98904 1.21156 0.96610 0.84487 0.92637 1.44493 1.58179 1.14858 1.15696 1.19044 1.27344 0.91738 0.97671 0.90481 1.24800 0.99188 0.98637 0.97836 1.69980 1.31866 1.36120 1.18744 0.86134 0.78022 0.81923 0.79899 1.21669 1.21623 1.20658 1.21560 0.96490 0.91119 0.89214 1.21329 1.00305 0.97491 0.90555 0.85704 1.19098 0.96211 0.95891 0.93492 1.21103 0.96306 0.96206 0.99957 1.21143 0.99319 0.98231 0.94785 1.21156 0.99120 0.99765 0.94351 1.21129 0.96398 0.96217 0.99876 1.20959 0.99644 0.98579 0.93747 0.91777 0.91673 0.91898 0.90323 0.92053 0.92188 0.76406 0.91374 0.91723 0.92146 0.91992 0.94269 0.93261 0.93754 0.94667 0.96385 0.85906 0.86009 0.86211 0.86073 0.85964 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -0.88 8.62 37.16 0.32 -0.56 16 2 C -0.08 -0.70 2.70 -154.51 -0.42 -1.11 16 3 C -0.12 -1.18 8.73 37.16 0.32 -0.86 16 4 C -0.18 -1.85 5.17 -91.78 -0.47 -2.33 16 5 H 0.12 1.05 6.08 -51.93 -0.32 0.73 16 6 C 0.54 7.14 7.08 -10.98 -0.08 7.07 16 7 O -0.54 -8.75 14.39 5.55 0.08 -8.67 16 8 N -0.72 -9.13 5.45 -60.29 -0.33 -9.46 16 9 C 0.13 1.92 5.12 -4.04 -0.02 1.90 16 10 C -0.12 -1.93 3.07 -88.47 -0.27 -2.20 16 11 H 0.08 1.27 8.14 -51.93 -0.42 0.85 16 12 C -0.13 -2.44 6.43 -24.86 -0.16 -2.60 16 13 C 0.18 4.24 5.38 -3.04 -0.02 4.22 16 14 N -0.61 -15.39 3.39 -170.04 -0.58 -15.97 16 15 C -0.23 -6.40 10.27 -15.06 -0.15 -6.56 16 16 H 0.08 2.07 7.84 -52.49 -0.41 1.66 16 17 C -0.01 -0.23 5.46 -17.43 -0.10 -0.33 16 18 N -0.92 -27.09 10.39 55.49 0.58 -26.51 16 19 Si 0.91 22.05 29.56 -169.99 -5.03 17.03 16 20 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 21 H -0.29 -7.08 7.11 56.52 0.40 -6.68 16 22 H -0.28 -6.61 7.11 56.52 0.40 -6.21 16 23 C 0.14 2.85 6.56 -2.53 -0.02 2.84 16 24 C -0.08 -0.78 5.20 -91.78 -0.48 -1.26 16 25 H 0.13 1.39 7.76 -51.93 -0.40 0.99 16 26 C -0.05 -0.44 5.04 -104.62 -0.53 -0.96 16 27 C -0.12 -1.03 7.78 -39.58 -0.31 -1.33 16 28 C -0.12 -0.94 10.05 -39.58 -0.40 -1.34 16 29 C -0.13 -0.97 10.05 -39.58 -0.40 -1.36 16 30 C -0.12 -0.92 10.05 -39.58 -0.40 -1.32 16 31 C -0.11 -0.97 9.74 -39.58 -0.39 -1.35 16 32 H 0.06 0.43 8.09 -51.93 -0.42 0.01 16 33 H 0.06 0.48 8.14 -51.93 -0.42 0.06 16 34 H 0.06 0.44 5.94 -51.93 -0.31 0.13 16 35 H 0.08 0.91 6.39 -51.93 -0.33 0.58 16 36 H 0.06 0.49 8.14 -51.93 -0.42 0.07 16 37 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 38 H 0.40 4.40 8.43 -40.82 -0.34 4.05 16 39 H 0.07 1.07 8.03 -51.93 -0.42 0.65 16 40 H 0.06 0.91 8.14 -51.92 -0.42 0.49 16 41 H 0.06 1.05 8.04 -51.93 -0.42 0.63 16 42 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 43 H 0.04 1.04 7.58 -51.93 -0.39 0.64 16 44 H 0.05 1.33 7.34 -51.93 -0.38 0.95 16 45 H 0.25 7.20 8.31 -40.82 -0.34 6.86 16 46 H 0.04 0.67 8.14 -51.93 -0.42 0.25 16 47 H 0.02 0.38 7.96 -51.93 -0.41 -0.03 16 48 H 0.12 0.95 5.19 -52.49 -0.27 0.67 16 49 H 0.12 0.77 8.06 -52.49 -0.42 0.34 16 50 H 0.12 0.68 8.06 -52.49 -0.42 0.26 16 51 H 0.12 0.70 8.06 -52.49 -0.42 0.28 16 52 H 0.12 0.91 8.06 -52.49 -0.42 0.49 16 LS Contribution 409.18 15.07 6.17 6.17 Total: -1.00 -32.33 409.18 -11.67 -44.00 By element: Atomic # 1 Polarization: 11.48 SS G_CDS: -8.61 Total: 2.87 kcal Atomic # 6 Polarization: -5.50 SS G_CDS: -3.95 Total: -9.45 kcal Atomic # 7 Polarization: -51.61 SS G_CDS: -0.33 Total: -51.94 kcal Atomic # 8 Polarization: -8.75 SS G_CDS: 0.08 Total: -8.67 kcal Atomic # 14 Polarization: 22.05 SS G_CDS: -5.03 Total: 17.03 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -32.33 -11.67 -44.00 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028540689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 71.257 kcal (2) G-P(sol) polarization free energy of solvation -32.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 38.931 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.674 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -44.000 kcal (6) G-S(sol) free energy of system = (1) + (5) 27.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.13 seconds