Wall clock time and date at job start Wed Apr 1 2020 02:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53007 * 115.56112 * 2 1 4 4 C 1.52996 * 117.50016 * 145.68723 * 2 1 3 5 5 H 1.09006 * 117.51740 * 0.02562 * 4 2 1 6 6 C 1.50701 * 117.50131 * 214.98165 * 4 2 1 7 7 O 1.21283 * 120.00064 * 310.82109 * 6 4 2 8 8 N 1.34780 * 120.00074 * 130.81754 * 6 4 2 9 9 C 1.46495 * 119.99902 * 180.02562 * 8 6 4 10 10 C 1.53004 * 109.47012 * 179.97438 * 9 8 6 11 11 H 1.09002 * 110.88737 * 305.69976 * 10 9 8 12 12 C 1.55165 * 111.00239 * 181.82093 * 10 9 8 13 13 C 1.54376 * 102.91583 * 206.45235 * 12 10 9 14 14 N 1.47023 * 107.29001 * 22.13943 * 13 12 10 15 15 C 1.36936 * 125.64922 * 181.05326 * 14 13 12 16 16 H 1.07998 * 120.00430 * 180.98492 * 15 14 13 17 17 C 1.38820 * 119.99750 * 0.99112 * 15 14 13 18 18 N 1.31618 * 120.00029 * 351.42807 * 17 15 14 19 19 Si 1.86800 * 119.99808 * 171.42393 * 17 15 14 20 20 H 1.48509 * 109.46654 * 94.79638 * 19 17 15 21 21 H 1.48495 * 109.47173 * 214.79478 * 19 17 15 22 22 H 1.48497 * 109.47350 * 334.79752 * 19 17 15 23 23 C 1.47423 * 108.70258 * 1.08924 * 14 13 12 24 24 C 1.52991 * 60.00109 * 107.49127 * 4 2 1 25 25 H 1.09004 * 117.50005 * 107.51312 * 24 4 2 26 26 C 1.50699 * 117.49935 * 252.51253 * 24 4 2 27 27 C 1.38230 * 120.00014 * 8.33315 * 26 24 4 28 28 C 1.38242 * 119.99828 * 179.74616 * 27 26 24 29 29 C 1.38232 * 120.00031 * 0.54928 * 28 27 26 30 30 C 1.38240 * 120.00002 * 359.70665 * 29 28 27 31 31 C 1.38233 * 119.99842 * 0.02562 * 30 29 28 32 32 H 1.09001 * 109.47172 * 325.70549 * 1 2 3 33 33 H 1.09000 * 109.46717 * 85.70030 * 1 2 3 34 34 H 1.08999 * 109.47134 * 205.70359 * 1 2 3 35 35 H 1.09006 * 109.47141 * 198.88390 * 3 2 1 36 36 H 1.09000 * 109.47013 * 318.88578 * 3 2 1 37 37 H 1.08997 * 109.47246 * 78.88366 * 3 2 1 38 38 H 0.97000 * 119.99697 * 359.97438 * 8 6 4 39 39 H 1.08996 * 109.47200 * 299.99648 * 9 8 6 40 40 H 1.09007 * 109.47453 * 59.99895 * 9 8 6 41 41 H 1.08996 * 110.72097 * 324.78584 * 12 10 9 42 42 H 1.08999 * 110.71711 * 88.06071 * 12 10 9 43 43 H 1.08996 * 109.84715 * 262.72889 * 13 12 10 44 44 H 1.09003 * 110.02612 * 141.64823 * 13 12 10 45 45 H 0.96997 * 120.00106 * 180.02562 * 18 17 15 46 46 H 1.08996 * 110.36725 * 217.03354 * 23 14 13 47 47 H 1.09006 * 110.46017 * 94.75476 * 23 14 13 48 48 H 1.07997 * 119.99983 * 359.97438 * 27 26 24 49 49 H 1.07998 * 119.99802 * 180.27617 * 28 27 26 50 50 H 1.08000 * 119.99886 * 179.72322 * 29 28 27 51 51 H 1.07999 * 119.99775 * 179.97438 * 30 29 28 52 52 H 1.07998 * 119.99733 * 179.97438 * 31 30 29 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.1902 1.3803 0.0000 4 6 2.2364 -1.1209 0.7650 5 1 1.6115 -1.8588 1.2681 6 6 3.5293 -0.7810 1.4609 7 8 4.4029 -0.1899 0.8624 8 7 3.7146 -1.1340 2.7484 9 6 4.9711 -0.8031 3.4250 10 6 4.9230 -1.3116 4.8672 11 1 4.0422 -0.9311 5.3843 12 6 6.2209 -0.9393 5.6317 13 6 6.3116 -2.0374 6.7130 14 7 5.5203 -3.1828 6.2400 15 6 5.3290 -4.3559 6.9199 16 1 4.7411 -5.1466 6.4778 17 6 5.8908 -4.5287 8.1775 18 7 6.7423 -3.6410 8.6456 19 14 5.4380 -6.0212 9.2056 20 1 6.4449 -7.0921 8.9937 21 1 5.4116 -5.6437 10.6415 22 1 4.0977 -6.5145 8.7987 23 6 4.9677 -2.8594 4.9120 24 6 2.2365 -1.1210 -0.7649 25 1 3.1717 -0.8755 -1.2682 26 6 1.3721 -2.1406 -1.4607 27 6 0.4896 -2.9132 -0.7292 28 6 -0.3071 -3.8448 -1.3682 29 6 -0.2132 -4.0118 -2.7372 30 6 0.6732 -3.2429 -3.4681 31 6 1.4659 -2.3074 -2.8298 32 1 -0.3633 0.8490 0.5790 33 1 -0.3633 0.0770 -1.0248 34 1 -0.3633 -0.9260 0.4457 35 1 3.2242 1.2885 -0.3326 36 1 1.6485 2.0421 -0.6758 37 1 2.1682 1.7936 1.0083 38 1 3.0157 -1.6064 3.2271 39 1 5.8016 -1.2754 2.9003 40 1 5.1097 0.2782 3.4257 41 1 7.0845 -0.9797 4.9680 42 1 6.1301 0.0462 6.0886 43 1 5.9019 -1.6665 7.6524 44 1 7.3500 -2.3373 6.8543 45 1 7.1351 -3.7619 9.5242 46 1 3.9638 -3.2710 4.8084 47 1 5.6174 -3.2430 4.1252 48 1 0.4199 -2.7863 0.3410 49 1 -0.9998 -4.4453 -0.7973 50 1 -0.8324 -4.7428 -3.2358 51 1 0.7469 -3.3736 -4.5376 52 1 2.1586 -1.7070 -3.4008 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028540689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 02:43:02 Heat of formation + Delta-G solvation = 10.183859 kcal Electronic energy + Delta-G solvation = -29345.293707 eV Core-core repulsion = 25502.770494 eV Total energy + Delta-G solvation = -3842.523212 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -41.71286 -40.18902 -39.31590 -38.05294 -35.98082 -34.30422 -32.23344 -31.79044 -31.71867 -30.36487 -29.60557 -28.32353 -27.42007 -25.98205 -24.59566 -23.36677 -22.63036 -21.91634 -21.45612 -20.64379 -20.01452 -18.88047 -18.33363 -17.34167 -17.21194 -16.69271 -16.48941 -16.13747 -16.02889 -15.74857 -15.49669 -15.08864 -14.99306 -14.73990 -14.42757 -14.22751 -14.06075 -13.90711 -13.81441 -13.48460 -13.38958 -13.35555 -13.20323 -13.02969 -12.99869 -12.73884 -12.65940 -12.43609 -12.03339 -11.92623 -11.88239 -11.86784 -11.75656 -11.56174 -11.45956 -11.32668 -10.97774 -10.70745 -10.69492 -10.03468 -9.77350 -9.41624 -8.90767 -7.86472 -5.20767 0.40867 0.53832 1.45444 1.45788 1.47105 1.56728 2.14890 2.49326 2.67353 3.11585 3.31481 3.47447 3.60350 3.62828 3.72770 3.80856 3.94916 4.00923 4.02311 4.05198 4.16083 4.17893 4.27975 4.34774 4.43930 4.60001 4.61260 4.62373 4.70265 4.72422 4.75497 4.80748 4.90943 4.94328 5.00999 5.03274 5.05366 5.06841 5.07234 5.14451 5.20192 5.26869 5.35559 5.43686 5.45597 5.50621 5.62595 5.67083 5.67155 5.73580 5.76223 6.14515 6.19346 6.57348 7.09408 7.25782 7.77571 8.42155 9.24463 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.012987 B = 0.002235 C = 0.001995 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2155.461534 B =12527.165720 C =14031.845694 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.114 4.114 2 C -0.066 4.066 3 C -0.121 4.121 4 C -0.184 4.184 5 H 0.141 0.859 6 C 0.541 3.459 7 O -0.577 6.577 8 N -0.715 5.715 9 C 0.146 3.854 10 C -0.094 4.094 11 H 0.091 0.909 12 C -0.122 4.122 13 C 0.181 3.819 14 N -0.629 5.629 15 C -0.243 4.243 16 H 0.083 0.917 17 C -0.068 4.068 18 N -0.951 5.951 19 Si 0.977 3.023 20 H -0.289 1.289 21 H -0.294 1.294 22 H -0.266 1.266 23 C 0.138 3.862 24 C -0.079 4.079 25 H 0.106 0.894 26 C -0.059 4.059 27 C -0.126 4.126 28 C -0.124 4.124 29 C -0.131 4.131 30 C -0.124 4.124 31 C -0.126 4.126 32 H 0.073 0.927 33 H 0.066 0.934 34 H 0.070 0.930 35 H 0.055 0.945 36 H 0.077 0.923 37 H 0.056 0.944 38 H 0.412 0.588 39 H 0.055 0.945 40 H 0.074 0.926 41 H 0.069 0.931 42 H 0.086 0.914 43 H 0.007 0.993 44 H 0.009 0.991 45 H 0.247 0.753 46 H 0.049 0.951 47 H 0.014 0.986 48 H 0.132 0.868 49 H 0.139 0.861 50 H 0.140 0.860 51 H 0.139 0.861 52 H 0.126 0.874 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.427 6.953 -23.065 29.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C -0.067 4.067 3 C -0.178 4.178 4 C -0.205 4.205 5 H 0.159 0.841 6 C 0.329 3.671 7 O -0.457 6.457 8 N -0.366 5.366 9 C 0.022 3.978 10 C -0.113 4.113 11 H 0.110 0.890 12 C -0.161 4.161 13 C 0.056 3.944 14 N -0.355 5.355 15 C -0.372 4.372 16 H 0.101 0.899 17 C -0.261 4.261 18 N -0.600 5.600 19 Si 0.805 3.195 20 H -0.216 1.216 21 H -0.220 1.220 22 H -0.190 1.190 23 C 0.013 3.987 24 C -0.098 4.098 25 H 0.124 0.876 26 C -0.059 4.059 27 C -0.144 4.144 28 C -0.142 4.142 29 C -0.149 4.149 30 C -0.142 4.142 31 C -0.144 4.144 32 H 0.092 0.908 33 H 0.085 0.915 34 H 0.089 0.911 35 H 0.074 0.926 36 H 0.096 0.904 37 H 0.075 0.925 38 H 0.248 0.752 39 H 0.074 0.926 40 H 0.092 0.908 41 H 0.088 0.912 42 H 0.105 0.895 43 H 0.025 0.975 44 H 0.027 0.973 45 H 0.056 0.944 46 H 0.068 0.932 47 H 0.032 0.968 48 H 0.149 0.851 49 H 0.157 0.843 50 H 0.157 0.843 51 H 0.157 0.843 52 H 0.144 0.856 Dipole moment (debyes) X Y Z Total from point charges -16.745 7.275 -23.277 29.582 hybrid contribution 0.359 -1.174 1.292 1.782 sum -16.385 6.101 -21.985 28.090 Atomic orbital electron populations 1.21437 0.89652 1.03229 1.02767 1.21704 0.95765 0.90283 0.98931 1.21426 1.00544 0.93696 1.02165 1.22696 0.97238 1.05623 0.94917 0.84102 1.19938 0.87931 0.77751 0.81494 1.90650 1.45767 1.43108 1.66180 1.45901 1.19217 1.59388 1.12059 1.21128 0.85985 1.00202 0.90484 1.22406 0.99255 0.95323 0.94362 0.89050 1.22724 0.97046 0.98904 0.97446 1.20933 0.93891 0.85956 0.93589 1.44829 1.58644 1.14523 1.17491 1.19464 1.26741 0.92863 0.98108 0.89880 1.25669 0.99493 1.01756 0.99187 1.70204 1.33065 1.38064 1.18671 0.85081 0.78219 0.78454 0.77702 1.21593 1.22039 1.19028 1.21736 0.96624 0.93778 0.86528 1.21233 0.99988 0.98364 0.90210 0.87592 1.19110 0.96689 0.96236 0.93830 1.21245 0.96358 0.96346 1.00444 1.21422 0.99408 0.98154 0.95229 1.21475 0.99067 0.99894 0.94475 1.21397 0.96049 0.95784 1.00945 1.21147 1.00203 0.99196 0.93839 0.90820 0.91469 0.91149 0.92609 0.90404 0.92466 0.75168 0.92644 0.90806 0.91220 0.89502 0.97461 0.97293 0.94423 0.93227 0.96804 0.85068 0.84330 0.84255 0.84300 0.85571 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -1.43 8.62 71.98 0.62 -0.81 16 2 C -0.07 -1.11 2.70 -52.18 -0.14 -1.25 16 3 C -0.12 -2.23 8.73 71.98 0.63 -1.60 16 4 C -0.18 -3.49 5.17 -11.54 -0.06 -3.55 16 5 H 0.14 2.09 6.08 -2.38 -0.01 2.07 16 6 C 0.54 13.64 7.08 87.66 0.62 14.26 16 7 O -0.58 -18.46 14.39 -3.04 -0.04 -18.50 16 8 N -0.71 -16.78 5.45 -463.05 -2.52 -19.30 16 9 C 0.15 3.93 5.12 86.38 0.44 4.38 16 10 C -0.09 -2.91 3.07 -9.40 -0.03 -2.94 16 11 H 0.09 2.68 8.14 -2.39 -0.02 2.66 16 12 C -0.12 -4.33 6.43 31.80 0.20 -4.13 16 13 C 0.18 8.97 5.38 86.75 0.47 9.43 16 14 N -0.63 -32.16 3.39 -691.89 -2.35 -34.51 16 15 C -0.24 -13.61 10.27 84.04 0.86 -12.75 16 16 H 0.08 4.43 7.84 -2.91 -0.02 4.40 16 17 C -0.07 -3.90 5.46 84.86 0.46 -3.44 16 18 N -0.95 -57.81 10.39 21.65 0.23 -57.58 16 19 Si 0.98 45.76 29.56 68.60 2.03 47.79 16 20 H -0.29 -13.39 7.11 99.48 0.71 -12.68 16 21 H -0.29 -13.83 7.11 99.48 0.71 -13.12 16 22 H -0.27 -11.65 7.11 99.48 0.71 -10.94 16 23 C 0.14 5.40 6.56 86.85 0.57 5.96 16 24 C -0.08 -1.53 5.20 -11.54 -0.06 -1.59 16 25 H 0.11 2.44 7.76 -2.39 -0.02 2.42 16 26 C -0.06 -1.03 5.04 -19.87 -0.10 -1.13 16 27 C -0.13 -1.95 7.78 22.27 0.17 -1.78 16 28 C -0.12 -1.71 10.05 22.27 0.22 -1.49 16 29 C -0.13 -1.72 10.05 22.27 0.22 -1.50 16 30 C -0.12 -1.72 10.05 22.27 0.22 -1.50 16 31 C -0.13 -2.07 9.74 22.27 0.22 -1.85 16 32 H 0.07 0.80 8.09 -2.39 -0.02 0.78 16 33 H 0.07 0.84 8.14 -2.39 -0.02 0.82 16 34 H 0.07 0.79 5.94 -2.39 -0.01 0.78 16 35 H 0.05 1.30 6.39 -2.38 -0.02 1.28 16 36 H 0.08 1.14 8.14 -2.39 -0.02 1.12 16 37 H 0.06 1.07 8.14 -2.39 -0.02 1.05 16 38 H 0.41 7.98 8.43 -92.71 -0.78 7.20 16 39 H 0.06 1.67 8.03 -2.39 -0.02 1.65 16 40 H 0.07 1.92 8.14 -2.38 -0.02 1.90 16 41 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 42 H 0.09 2.66 8.14 -2.39 -0.02 2.64 16 43 H 0.01 0.39 7.58 -2.39 -0.02 0.37 16 44 H 0.01 0.50 7.34 -2.39 -0.02 0.48 16 45 H 0.25 14.56 8.31 -92.71 -0.77 13.79 16 46 H 0.05 1.79 8.14 -2.39 -0.02 1.77 16 47 H 0.01 0.57 7.96 -2.38 -0.02 0.55 16 48 H 0.13 1.70 5.19 -2.91 -0.02 1.69 16 49 H 0.14 1.36 8.06 -2.91 -0.02 1.34 16 50 H 0.14 1.20 8.06 -2.91 -0.02 1.18 16 51 H 0.14 1.33 8.06 -2.91 -0.02 1.31 16 52 H 0.13 1.84 8.06 -2.91 -0.02 1.82 16 Total: -1.00 -71.74 409.18 3.01 -68.73 By element: Atomic # 1 Polarization: 20.54 SS G_CDS: 0.13 Total: 20.66 kcal Atomic # 6 Polarization: -12.83 SS G_CDS: 5.55 Total: -7.28 kcal Atomic # 7 Polarization: -106.75 SS G_CDS: -4.65 Total: -111.40 kcal Atomic # 8 Polarization: -18.46 SS G_CDS: -0.04 Total: -18.50 kcal Atomic # 14 Polarization: 45.76 SS G_CDS: 2.03 Total: 47.79 kcal Total: -71.74 3.01 -68.73 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028540689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 78.912 kcal (2) G-P(sol) polarization free energy of solvation -71.742 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 7.170 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.014 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.728 kcal (6) G-S(sol) free energy of system = (1) + (5) 10.184 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds