Wall clock time and date at job start Wed Apr 1 2020 03:08:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.50701 * 109.46991 * 2 1 4 4 C 1.38253 * 120.00428 * 265.18433 * 3 2 1 5 5 C 1.38213 * 120.00516 * 180.20961 * 4 3 2 6 6 C 1.38261 * 119.99464 * 359.85620 * 5 4 3 7 7 C 1.38213 * 120.00119 * 359.96047 * 6 5 4 8 8 C 1.38220 * 119.99765 * 84.99720 * 3 2 1 9 9 C 1.50689 * 120.00131 * 0.02562 * 8 3 2 10 10 H 1.08999 * 115.56591 * 334.03317 * 9 8 3 11 11 C 1.53077 * 117.49507 * 188.32561 * 9 8 3 12 12 C 1.53002 * 59.98498 * 252.50943 * 11 9 8 13 13 H 1.09001 * 117.49461 * 107.50104 * 12 11 9 14 14 C 1.50700 * 117.49942 * 252.49668 * 12 11 9 15 15 O 1.21283 * 119.99803 * 68.74644 * 14 12 11 16 16 N 1.34777 * 119.99675 * 249.02519 * 14 12 11 17 17 C 1.46497 * 119.99525 * 179.72583 * 16 14 12 18 18 C 1.52999 * 109.46992 * 179.97438 * 17 16 14 19 19 H 1.09006 * 110.88816 * 305.69699 * 18 17 16 20 20 C 1.55164 * 111.00706 * 181.81956 * 18 17 16 21 21 C 1.54371 * 102.92058 * 206.45297 * 20 18 17 22 22 N 1.47023 * 107.28751 * 22.13718 * 21 20 18 23 23 C 1.36935 * 125.64379 * 181.12237 * 22 21 20 24 24 H 1.08002 * 119.99558 * 179.97438 * 23 22 21 25 25 C 1.38813 * 120.00102 * 359.96656 * 23 22 21 26 26 N 1.31611 * 120.00119 * 359.97438 * 25 23 22 27 27 Si 1.86803 * 119.99849 * 179.97438 * 25 23 22 28 28 H 1.48501 * 109.47121 * 359.97438 * 27 25 23 29 29 H 1.48501 * 109.47199 * 119.99797 * 27 25 23 30 30 H 1.48493 * 109.47121 * 239.99899 * 27 25 23 31 31 C 1.47425 * 108.70380 * 1.09345 * 22 21 20 32 32 H 1.09007 * 109.46705 * 59.99944 * 1 2 3 33 33 H 1.09004 * 109.46944 * 179.97438 * 1 2 3 34 34 H 1.08997 * 109.47047 * 300.00190 * 1 2 3 35 35 H 1.08995 * 109.47475 * 240.00113 * 2 1 3 36 36 H 1.08997 * 109.47053 * 119.99628 * 2 1 3 37 37 H 1.08008 * 119.99916 * 0.04643 * 4 3 2 38 38 H 1.07997 * 120.00301 * 179.84014 * 5 4 3 39 39 H 1.08001 * 119.99640 * 179.97438 * 6 5 4 40 40 H 1.08000 * 119.99374 * 179.97438 * 7 6 5 41 41 H 1.09008 * 117.51268 * 145.03211 * 11 9 8 42 42 H 1.08998 * 117.51574 * 359.97438 * 11 9 8 43 43 H 0.97000 * 119.99894 * 359.71837 * 16 14 12 44 44 H 1.08995 * 109.47421 * 299.99467 * 17 16 14 45 45 H 1.09001 * 109.47621 * 60.00103 * 17 16 14 46 46 H 1.08998 * 110.71540 * 324.79235 * 20 18 17 47 47 H 1.09003 * 110.71809 * 88.05855 * 20 18 17 48 48 H 1.08996 * 109.84317 * 262.72935 * 21 20 18 49 49 H 1.08998 * 110.02570 * 141.64603 * 21 20 18 50 50 H 0.97006 * 120.00253 * 180.02562 * 26 25 23 51 51 H 1.08998 * 110.36114 * 217.02911 * 31 22 21 52 52 H 1.08999 * 110.46244 * 94.75452 * 31 22 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0323 1.4208 0.0000 4 6 2.3575 2.0392 -1.1930 5 6 2.8223 3.3408 -1.1927 6 6 2.9592 4.0255 0.0006 7 6 2.6305 3.4087 1.1930 8 6 2.1642 2.1072 1.1925 9 6 1.8063 1.4345 2.4926 10 1 1.0716 0.6326 2.4206 11 6 1.7861 2.3009 3.7544 12 6 2.9121 1.2874 3.5398 13 1 3.8985 1.6770 3.2883 14 6 2.9019 0.0451 4.3927 15 8 2.0393 -0.7925 4.2338 16 7 3.8482 -0.1325 5.3359 17 6 3.8347 -1.3374 6.1691 18 6 5.0075 -1.2918 7.1506 19 1 5.9499 -1.1431 6.6235 20 6 5.0540 -2.5750 8.0217 21 6 5.7619 -2.0945 9.3066 22 7 5.5906 -0.6361 9.3805 23 6 6.0909 0.1774 10.3619 24 1 5.9093 1.2414 10.3258 25 6 6.8311 -0.3656 11.4032 26 7 7.0517 -1.6623 11.4475 27 14 7.5140 0.7444 12.7415 28 1 7.1290 2.1511 12.4622 29 1 6.9619 0.3313 14.0567 30 1 8.9945 0.6331 12.7691 31 6 4.7918 -0.1947 8.2228 32 1 -0.3633 0.5139 -0.8901 33 1 -0.3633 -1.0277 -0.0005 34 1 -0.3633 0.5139 0.8899 35 1 1.8934 -0.5138 -0.8899 36 1 1.8933 -0.5138 0.8900 37 1 2.2508 1.5041 -2.1252 38 1 3.0788 3.8229 -2.1244 39 1 3.3228 5.0425 0.0010 40 1 2.7379 3.9435 2.1251 41 1 1.0379 2.0690 4.5125 42 1 2.0320 3.3570 3.6441 43 1 4.5381 0.5374 5.4629 44 1 2.8978 -1.3851 6.7239 45 1 3.9266 -2.2190 5.5346 46 1 4.0466 -2.9262 8.2450 47 1 5.6350 -3.3547 7.5291 48 1 6.8225 -2.3413 9.2591 49 1 5.3106 -2.5655 10.1799 50 1 7.5686 -2.0418 12.1753 51 1 5.1515 0.7676 7.8586 52 1 3.7373 -0.1281 8.4905 RHF calculation, no. of doubly occupied orbitals= 65 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001028766562.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 03:08:24 Heat of formation + Delta-G solvation = 4.914587 kcal Electronic energy + Delta-G solvation = -28916.224706 eV Core-core repulsion = 25073.473001 eV Total energy + Delta-G solvation = -3842.751705 eV No. of doubly occupied orbitals = 65 Molecular weight (most abundant/longest-lived isotopes) = 342.205 amu Computer time = 3.60 seconds Orbital eigenvalues (eV) -41.41323 -40.37099 -39.29679 -37.34423 -35.98398 -35.07582 -34.29769 -31.78811 -31.38517 -30.22531 -29.93960 -27.49964 -26.06892 -24.98657 -24.67675 -24.04600 -22.07571 -21.94529 -21.49510 -21.12824 -20.65006 -18.92145 -18.39532 -17.57480 -17.15549 -16.80709 -16.59910 -16.33337 -15.99572 -15.84398 -15.58483 -15.07344 -14.89625 -14.73174 -14.56253 -14.37654 -14.06858 -13.97008 -13.82440 -13.58615 -13.40564 -13.12109 -13.04862 -12.76883 -12.73598 -12.66761 -12.65488 -12.28538 -11.98641 -11.95491 -11.85813 -11.81222 -11.73636 -11.54941 -11.47196 -11.45630 -11.34382 -10.88922 -10.71766 -10.07979 -9.64911 -9.37263 -8.89965 -7.85193 -5.20732 0.39647 0.52051 1.45953 1.46877 1.49977 1.57201 2.14004 2.49321 2.69571 3.10594 3.33201 3.54280 3.60779 3.70394 3.79656 3.88413 3.92689 3.97110 4.02150 4.03179 4.15017 4.16768 4.28883 4.34490 4.44231 4.49889 4.61498 4.64366 4.66332 4.70302 4.70874 4.77089 4.81750 4.91781 4.96684 4.98546 5.05868 5.07202 5.09760 5.14039 5.18977 5.27301 5.35654 5.37931 5.46008 5.47997 5.65026 5.66856 5.67339 5.77926 5.80574 6.15521 6.20138 6.55478 7.10306 7.23033 7.78072 8.42474 9.25546 Molecular weight = 342.20amu Principal moments of inertia in cm(-1) A = 0.018900 B = 0.001889 C = 0.001775 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1481.136415 B =14822.570802 C =15769.615632 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 C -0.085 4.085 4 C -0.126 4.126 5 C -0.126 4.126 6 C -0.129 4.129 7 C -0.123 4.123 8 C -0.064 4.064 9 C -0.087 4.087 10 H 0.110 0.890 11 C -0.132 4.132 12 C -0.178 4.178 13 H 0.144 0.856 14 C 0.539 3.461 15 O -0.583 6.583 16 N -0.713 5.713 17 C 0.145 3.855 18 C -0.095 4.095 19 H 0.089 0.911 20 C -0.123 4.123 21 C 0.183 3.817 22 N -0.629 5.629 23 C -0.239 4.239 24 H 0.085 0.915 25 C -0.071 4.071 26 N -0.953 5.953 27 Si 0.979 3.021 28 H -0.263 1.263 29 H -0.295 1.295 30 H -0.292 1.292 31 C 0.139 3.861 32 H 0.061 0.939 33 H 0.062 0.938 34 H 0.048 0.952 35 H 0.079 0.921 36 H 0.060 0.940 37 H 0.134 0.866 38 H 0.140 0.860 39 H 0.141 0.859 40 H 0.139 0.861 41 H 0.098 0.902 42 H 0.133 0.867 43 H 0.414 0.586 44 H 0.058 0.942 45 H 0.072 0.928 46 H 0.070 0.930 47 H 0.085 0.915 48 H 0.012 0.988 49 H 0.004 0.996 50 H 0.246 0.754 51 H 0.050 0.950 52 H 0.018 0.982 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.180 9.787 -27.561 30.968 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.125 4.125 3 C -0.085 4.085 4 C -0.144 4.144 5 C -0.144 4.144 6 C -0.147 4.147 7 C -0.141 4.141 8 C -0.064 4.064 9 C -0.106 4.106 10 H 0.128 0.872 11 C -0.169 4.169 12 C -0.199 4.199 13 H 0.161 0.839 14 C 0.327 3.673 15 O -0.464 6.464 16 N -0.363 5.363 17 C 0.021 3.979 18 C -0.114 4.114 19 H 0.108 0.892 20 C -0.162 4.162 21 C 0.058 3.942 22 N -0.356 5.356 23 C -0.368 4.368 24 H 0.102 0.898 25 C -0.263 4.263 26 N -0.602 5.602 27 Si 0.807 3.193 28 H -0.188 1.188 29 H -0.222 1.222 30 H -0.219 1.219 31 C 0.014 3.986 32 H 0.080 0.920 33 H 0.081 0.919 34 H 0.067 0.933 35 H 0.098 0.902 36 H 0.079 0.921 37 H 0.152 0.848 38 H 0.158 0.842 39 H 0.159 0.841 40 H 0.157 0.843 41 H 0.117 0.883 42 H 0.151 0.849 43 H 0.250 0.750 44 H 0.076 0.924 45 H 0.090 0.910 46 H 0.089 0.911 47 H 0.104 0.896 48 H 0.031 0.969 49 H 0.022 0.978 50 H 0.055 0.945 51 H 0.068 0.932 52 H 0.035 0.965 Dipole moment (debyes) X Y Z Total from point charges -10.668 9.177 -27.469 30.864 hybrid contribution 0.880 0.251 1.412 1.683 sum -9.788 9.428 -26.057 29.388 Atomic orbital electron populations 1.21712 0.94263 1.02097 1.01920 1.20559 0.96669 0.92556 1.02752 1.19888 0.99201 0.96427 0.92942 1.21257 0.99843 0.95738 0.97584 1.21452 0.99150 0.94653 0.99096 1.21414 1.00089 1.00903 0.92266 1.21285 0.99158 0.94151 0.99476 1.19025 1.00514 0.94403 0.92434 1.21024 0.99826 1.01771 0.87931 0.87173 1.23258 0.97987 0.97332 0.98325 1.22338 0.98346 0.96968 1.02237 0.83879 1.20067 0.80376 0.87046 0.79830 1.90672 1.38704 1.46458 1.70534 1.45904 1.31018 1.23761 1.35665 1.21146 0.97534 0.87605 0.91650 1.22412 0.98307 0.96146 0.94570 0.89227 1.22732 1.00988 0.96950 0.95526 1.20925 0.96480 0.83477 0.93360 1.44822 1.61328 1.03813 1.25590 1.19516 1.25924 0.90737 1.00671 0.89760 1.25690 1.01716 0.97509 1.01432 1.70200 1.45210 1.11218 1.33575 0.84996 0.77319 0.78440 0.78504 1.18755 1.22187 1.21900 1.21743 0.93663 0.96438 0.86787 0.91962 0.91922 0.93333 0.90202 0.92129 0.84765 0.84171 0.84099 0.84324 0.88349 0.84943 0.74994 0.92381 0.90973 0.91140 0.89636 0.96941 0.97813 0.94480 0.93208 0.96450 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.18 9.74 71.98 0.70 -1.48 16 2 C -0.09 -1.47 5.38 29.85 0.16 -1.31 16 3 C -0.08 -1.45 5.13 -19.86 -0.10 -1.55 16 4 C -0.13 -1.83 9.68 22.27 0.22 -1.61 16 5 C -0.13 -1.59 10.05 22.27 0.22 -1.36 16 6 C -0.13 -1.63 10.05 22.27 0.22 -1.40 16 7 C -0.12 -1.75 9.30 22.27 0.21 -1.54 16 8 C -0.06 -1.10 5.61 -19.87 -0.11 -1.21 16 9 C -0.09 -1.62 4.66 -11.52 -0.05 -1.68 16 10 H 0.11 2.49 5.48 -2.39 -0.01 2.48 16 11 C -0.13 -2.05 9.57 30.62 0.29 -1.76 16 12 C -0.18 -3.25 5.82 -11.54 -0.07 -3.32 16 13 H 0.14 2.06 8.14 -2.39 -0.02 2.05 16 14 C 0.54 13.53 7.61 87.66 0.67 14.19 16 15 O -0.58 -19.10 16.26 -3.04 -0.05 -19.15 16 16 N -0.71 -16.54 5.45 -463.07 -2.52 -19.07 16 17 C 0.14 3.88 5.12 86.38 0.44 4.32 16 18 C -0.09 -2.93 3.07 -9.40 -0.03 -2.96 16 19 H 0.09 2.66 8.14 -2.38 -0.02 2.64 16 20 C -0.12 -4.35 6.43 31.80 0.20 -4.15 16 21 C 0.18 9.02 5.38 86.74 0.47 9.48 16 22 N -0.63 -32.00 3.39 -691.91 -2.35 -34.35 16 23 C -0.24 -13.34 10.28 84.03 0.86 -12.48 16 24 H 0.08 4.45 7.83 -2.91 -0.02 4.43 16 25 C -0.07 -4.05 5.49 84.86 0.47 -3.58 16 26 N -0.95 -57.79 10.31 21.65 0.22 -57.57 16 27 Si 0.98 45.74 29.55 68.60 2.03 47.77 16 28 H -0.26 -11.45 7.11 99.48 0.71 -10.74 16 29 H -0.29 -13.85 7.11 99.48 0.71 -13.15 16 30 H -0.29 -13.60 7.11 99.48 0.71 -12.89 16 31 C 0.14 5.34 6.56 86.85 0.57 5.91 16 32 H 0.06 0.83 8.14 -2.38 -0.02 0.81 16 33 H 0.06 0.89 8.14 -2.39 -0.02 0.87 16 34 H 0.05 0.83 7.17 -2.39 -0.02 0.81 16 35 H 0.08 1.12 8.05 -2.39 -0.02 1.10 16 36 H 0.06 1.23 6.95 -2.39 -0.02 1.21 16 37 H 0.13 1.46 8.06 -2.91 -0.02 1.44 16 38 H 0.14 1.13 8.06 -2.91 -0.02 1.10 16 39 H 0.14 1.15 8.06 -2.91 -0.02 1.13 16 40 H 0.14 1.45 6.02 -2.91 -0.02 1.43 16 41 H 0.10 1.69 8.14 -2.38 -0.02 1.67 16 42 H 0.13 1.38 6.18 -2.39 -0.01 1.37 16 43 H 0.41 7.88 8.43 -92.71 -0.78 7.09 16 44 H 0.06 1.71 8.03 -2.39 -0.02 1.70 16 45 H 0.07 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.07 2.35 8.04 -2.39 -0.02 2.33 16 47 H 0.09 2.65 8.14 -2.39 -0.02 2.63 16 48 H 0.01 0.68 7.38 -2.39 -0.02 0.67 16 49 H 0.00 0.20 7.50 -2.39 -0.02 0.19 16 50 H 0.25 14.49 8.31 -92.70 -0.77 13.72 16 51 H 0.05 1.77 8.14 -2.39 -0.02 1.75 16 52 H 0.02 0.69 7.95 -2.39 -0.02 0.67 16 Total: -1.00 -72.29 413.82 2.80 -69.49 By element: Atomic # 1 Polarization: 20.25 SS G_CDS: 0.13 Total: 20.37 kcal Atomic # 6 Polarization: -12.84 SS G_CDS: 5.34 Total: -7.50 kcal Atomic # 7 Polarization: -106.33 SS G_CDS: -4.65 Total: -110.98 kcal Atomic # 8 Polarization: -19.10 SS G_CDS: -0.05 Total: -19.15 kcal Atomic # 14 Polarization: 45.74 SS G_CDS: 2.03 Total: 47.77 kcal Total: -72.29 2.80 -69.49 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001028766562.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 74.401 kcal (2) G-P(sol) polarization free energy of solvation -72.285 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 2.116 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.799 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.487 kcal (6) G-S(sol) free energy of system = (1) + (5) 4.915 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 3.60 seconds